Non-Coding RNA Search

Ss1.1-Spl1-SPL01D090073.5

Sequence:


               
               AAGTAAACCTAGCAACTAGGGAATCGAAGAGTACTGAAGGACTTAGGAAGCCTTCTGCTC
ACAAGGAGCGGTTTTCAGCCTCCTGGGCAAGGGAACAGTCTCCTTCCTTGCCTGGGACTC
TGGAACCATTTCTTTTTGGTGAAAGTAAGAGGCAGCTTGGGATCAAAAACCTTTCACGGA
GAAAAATCCCGACATGCCCATCCC------------------------------------
------------------------------------------------------------
------------CAAACCTGTGCCTCCGGAGCAACTTGAGCTGCTGCAGTTGGACTCTTA
ACCCACTGCTCCATAGCAAAAACTCATGAGATTGCTGAAGCTAAAGGAGATATTTAATTC
TAAGTTTGGATCCATTCCCAAGTTTTATGTTCGAGCACCAGGAAGAGTCAATATAATAGG
AGAGCACATAGATTATTGTGGATATTCTGTTCTTCCGATGGCTGTAGAACAAGATATGTT
AATAGCTGTGGAACCTGTGAAAACACACACTCTCCAGCTGGCCAATACCAATCCCTTGTA
TCCGGACTTCAATACTAGTGCTGATAACATCCAGATTGACAAAACCAAGCCTCTCTGGCA
CAACTATTTCCTATGTGGATTTAAAGGAATTCAGGAACACTTTGGTCTTAGTAACCTGAT
TGGAATGAATTGCTTGGTAGATGGAAATATCCCACCTAGTTCTGGCCTTTCCAGCTCCAG
TGCTTTGGTCTGTTGTGCTGGCTTGGTGACCCTTACCGTGCTGGGAATGAACCTGTCCAA
GGTGGAACTTGCGGAAATCTGTGCCAAGAGCGAGCGCTACATAGGCACTGAAGGTGGAGG
GATGGACCAGTCCATATCATTTCTTGCAGAAGAAGGAACTGCCAAGTTGATAGAATTTAG
TCCTCTGAGGGCAACTGATGTGAAGCTTCCAAGTGGAGCAGTGTTTGTAATTGCCAACAG
CTGTGTGGAAATGAACAAGGCAGCAACTTCTCATTTCAATATCAGGGTGATGGAGTGTCN
GCTGGCTGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTAAACCTAGCAACTAGGGAATCGAAGAGTACTGAAGGACTTAGGAAGCCTTCTGCTC
ACAAGGAGCGGTTTTCAGCCTCCTGGGCAAGGGAACAGTCTCCTTCCTTGCCTGGGACTC
TGGAACCATTTCTTTTTGGTGAAAGTAAGAGGCAGCTTGGGATCAAAAACCTTTCACGGA
GAAAAATCCCGACATGCCCATCCC------------------------------------
------------------------------------------------------------
------------CAAACCTGTGCCTCCGGAGCAACTTGAGCTGCTGCAGTTGGACTCTTA
ACCCACTGCTCCATAGCAAAAACTCATGAGATTGCTGAAGCTAAAGGAGATATTTAATTC
TAAGTTTGGATCCATTCCCAAGTTTTATGTTCGAGCACCAGGAAGAGTCAATATAATAGG
AGAGCACATAGATTATTGTGGATATTCTGTTCTTCCGATGGCTGTAGAACAAGATATGTT
AATAGCTGTGGAACCTGTGAAAACACACACTCTCCAGCTGGCCAATACCAATCCCTTGTA
TCCGGACTTCAATACTAGTGCTGATAACATCCAGATTGACAAAACCAAGCCTCTCTGGCA
CAACTATTTCCTATGTGGATTTAAAGGAATTCAGGAACACTTTGGTCTTAGTAACCTGAT
TGGAATGAATTGCTTGGTAGATGGAAATATCCCACCTAGTTCTGGCCTTTCCAGCTCCAG
TGCTTTGGTCTGTTGTGCTGGCTTGGTGACCCTTACCGTGCTGGGAATGAACCTGTCCAA
GGTGGAACTTGCGGAAATCTGTGCCAAGAGCGAGCGCTACATAGGCACTGAAGGTGGAGG
GATGGACCAGTCCATATCATTTCTTGCAGAAGAAGGAACTGCCAAGTTGATAGAATTTAG
TCCTCTGAGGGCAACTGATGTGAAGCTTCCAAGTGGAGCAGTGTTTGTAATTGCCAACAG
CTGTGTGGAAATGAACAAGGCAGCAACTTCTCATTTCAATATCAGGGTGATGGAGTGTCN
GCTGGCTGCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642077|ref|XP_523072.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642077|ref|XP_523072.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               36-194, + strand, RNAz p=0.991938
               

               
               51-164, - strand, RNAz p=0.857672

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-194, + strand, RNAz p=0.991938
               

               
               51-164, - strand, RNAz p=0.857672

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001001556, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001001556, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               36-203, gnl|bosTau2|chr10 (42370473-42370639)
               

               
               36-203, gnl|canFam2|chr30 (18357468-18357867)
               

               
               36-203, gnl|danRer3|chrNA (197510085-197509728)
               

               
               36-203, gnl|dasNov1|scaffold_12933 (10684-11066)
               

               
               36-203, gnl|echTel1|scaffold_302188 (99035-99452)
               

               
               36-203, gnl|hg17|chr15 (47235077-47235463)
               

               
               36-203, gnl|Hg17|chr15 (47235331-47235495)
               

               
               36-203, gnl|mm7|chr2 (125599852-125600210)
               

               
               36-203, gnl|monDom2|scaffold_12 (19525556-19525112)
               

               
               36-203, gnl|oryCun1|scaffold_204807 (21065-20705)
               

               
               36-203, gnl|panTro1|chr16_random (14103395-14103009)
               

               
               36-203, gnl|rheMac2|chr7 (27478429-27478815)
               

               
               36-203, gnl|rn3|chr3 (113071696-113072058)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-203, gnl|bosTau2|chr10 (42370473-42370639)
               

               
               36-203, gnl|canFam2|chr30 (18357468-18357867)
               

               
               36-203, gnl|danRer3|chrNA (197510085-197509728)
               

               
               36-203, gnl|dasNov1|scaffold_12933 (10684-11066)
               

               
               36-203, gnl|echTel1|scaffold_302188 (99035-99452)
               

               
               36-203, gnl|hg17|chr15 (47235077-47235463)
               

               
               36-203, gnl|Hg17|chr15 (47235331-47235495)
               

               
               36-203, gnl|mm7|chr2 (125599852-125600210)
               

               
               36-203, gnl|monDom2|scaffold_12 (19525556-19525112)
               

               
               36-203, gnl|oryCun1|scaffold_204807 (21065-20705)
               

               
               36-203, gnl|panTro1|chr16_random (14103395-14103009)
               

               
               36-203, gnl|rheMac2|chr7 (27478429-27478815)
               

               
               36-203, gnl|rn3|chr3 (113071696-113072058)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	36-194, + strand, RNAz p=0.991938
	51-164, - strand, RNAz p=0.857672

	36-203, gnl\|bosTau2\|chr10 (42370473-42370639)
	36-203, gnl\|canFam2\|chr30 (18357468-18357867)
	36-203, gnl\|danRer3\|chrNA (197510085-197509728)
	36-203, gnl\|dasNov1\|scaffold_12933 (10684-11066)
	36-203, gnl\|echTel1\|scaffold_302188 (99035-99452)
	36-203, gnl\|hg17\|chr15 (47235077-47235463)
	36-203, gnl\|Hg17\|chr15 (47235331-47235495)
	36-203, gnl\|mm7\|chr2 (125599852-125600210)
	36-203, gnl\|monDom2\|scaffold_12 (19525556-19525112)
	36-203, gnl\|oryCun1\|scaffold_204807 (21065-20705)
	36-203, gnl\|panTro1\|chr16_random (14103395-14103009)
	36-203, gnl\|rheMac2\|chr7 (27478429-27478815)
	36-203, gnl\|rn3\|chr3 (113071696-113072058)