Non-Coding RNA Search

Ss1.1-Spl1-SPL01D090081.5

Sequence:


               
               ACCACGGCCGTGGCGGGGGAACGGGTCGTGGACCCTGAGCCGCAGACCCGGAGGCAGTGA
GGGTCACAGCCTCAGGCCCCAGGTTCCTTTTGCGCTGCGCTGTGCCAGGCCCCTCGCGAG
AATGCAGTGGCCCGTGGGCCGGCGGTGGGCATGGGCCGCACTGCTGCTGGCGGCCGCAGC
TGTGCTGGCCCAGGTGGTCTGGATCTGGCTGGGCACTCAGAGTTTCATCTTCGAGCACGA
AGAGATCGCGCTGTTGGCGCGGCAGTATGCTGGGCTGGACCACGAGCTGGCCTTTTCTCG
GCTGATCGTGGAGCTGCGGCGGCTGCACCCAGGCCACGTGCTGCCCGATGAGGAACTGCA
GTGGGTGTTCGTGAACGCGGGAGGCTGGATGGGCGCCATGTGCCTTCTGCACGCCTCGCT
GTCCGAGTATGTGCTGCTCTTCGGCACCGCCCTGGGCTCTGGCGGCCACTCGGGGCGCTA
TTGGGCTGAGATCTCAGATACCATCATCTCTGGCACCTTCCACCAGTGGAGAGAGGGCAC
TACCAAAAGTGAGGTCTTCTACCCAGGGGAGACAGTGGTGCACGGGCCTGGCGAGGCAAC
GGCTGTGGAGTGGGGGCCAAACACATGGATGGTGGAGTACGGCCGGGGTGTCATCCCATC
TACCCTGGCCTTCGCGCTGGCTGACACCATCTTCAGCACCCAGGACTTCCTCACCCTCTT
CTACACCCTCCGAGCCTATGCCCGGGGCCTCCGGCTTGAACTTACCACCTACCTCTTCGG
CCAGGACCCCTGACCAGCCAGGCCTGAAGGAGGACCTGTGGATGGACAGGAGCGGGCAGG
CCCGCACACATCCACTTGCCAGAGCCCATGTGGAAAGACAGGGACACACAACACACAGAT
ACAGAGTTCCTGGTGTACAAGCAGGGCCACACACATGCTTTATACAACCATAGAGACTCA
TGGGAACATACGGGACACACAGACACTGACTGCTGTGGATATGGCAGCATCACGCATTCG
CACCCATCCAGAGAGGGAGCCCCACGTATACCCAGGGGGCCAGTCATGTTTCAGTGTACA
CCCACAGGCTCAACTCACTAACTCAGGCCTTTCCAGAGCTTCTCTGCCCCTAGTCAGGGC
TCTGGAGTTAGGGATGGGGTGGCAGTCACAAACTGCCTGGGTCTGACCCTTCAACCCAGC
AGCAGCTTGGGGTGGGTGGGATGAGGGAGAAGAGGAGCTGCCTTTGGAGGCTCCCTTCAC
CTGCAGCCATGACGCCCTTCCCCTTCATCTCCTTGTCCTCACCATATGCCTTACCCTAGT
CTATTCCCCTGCTATGCAAGTCCCCTTGTGCCTGTCCCCCACCCTCCGAACCAAGTTATC
TGGAAACCAGAATAATGCAGAAATTGCTGAGGTCGTACTTCCCCCCAGAGTATGATGGGG
ATGGGGAGGCTGGCCTCAGCGCAGGGCCCACTGGGAGAGGACCTGGATAGGTGGGCCCAG
GTCCAAGGGGCCGTGGCTGGTCTAGAGAAAGCCTTGTCTGCCCACACACACAGACCCCCA
TCGCAGTTTCCAGACACTGCCCTTGCTACATTCTCTGTCCATCTGTCTGTCTCTGTTAAT
AAAGACCTGTTGAACAGTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACGGCCGTGGCGGGGGAACGGGTCGTGGACCCTGAGCCGCAGACCCGGAGGCAGTGA
GGGTCACAGCCTCAGGCCCCAGGTTCCTTTTGCGCTGCGCTGTGCCAGGCCCCTCGCGAG
AATGCAGTGGCCCGTGGGCCGGCGGTGGGCATGGGCCGCACTGCTGCTGGCGGCCGCAGC
TGTGCTGGCCCAGGTGGTCTGGATCTGGCTGGGCACTCAGAGTTTCATCTTCGAGCACGA
AGAGATCGCGCTGTTGGCGCGGCAGTATGCTGGGCTGGACCACGAGCTGGCCTTTTCTCG
GCTGATCGTGGAGCTGCGGCGGCTGCACCCAGGCCACGTGCTGCCCGATGAGGAACTGCA
GTGGGTGTTCGTGAACGCGGGAGGCTGGATGGGCGCCATGTGCCTTCTGCACGCCTCGCT
GTCCGAGTATGTGCTGCTCTTCGGCACCGCCCTGGGCTCTGGCGGCCACTCGGGGCGCTA
TTGGGCTGAGATCTCAGATACCATCATCTCTGGCACCTTCCACCAGTGGAGAGAGGGCAC
TACCAAAAGTGAGGTCTTCTACCCAGGGGAGACAGTGGTGCACGGGCCTGGCGAGGCAAC
GGCTGTGGAGTGGGGGCCAAACACATGGATGGTGGAGTACGGCCGGGGTGTCATCCCATC
TACCCTGGCCTTCGCGCTGGCTGACACCATCTTCAGCACCCAGGACTTCCTCACCCTCTT
CTACACCCTCCGAGCCTATGCCCGGGGCCTCCGGCTTGAACTTACCACCTACCTCTTCGG
CCAGGACCCCTGACCAGCCAGGCCTGAAGGAGGACCTGTGGATGGACAGGAGCGGGCAGG
CCCGCACACATCCACTTGCCAGAGCCCATGTGGAAAGACAGGGACACACAACACACAGAT
ACAGAGTTCCTGGTGTACAAGCAGGGCCACACACATGCTTTATACAACCATAGAGACTCA
TGGGAACATACGGGACACACAGACACTGACTGCTGTGGATATGGCAGCATCACGCATTCG
CACCCATCCAGAGAGGGAGCCCCACGTATACCCAGGGGGCCAGTCATGTTTCAGTGTACA
CCCACAGGCTCAACTCACTAACTCAGGCCTTTCCAGAGCTTCTCTGCCCCTAGTCAGGGC
TCTGGAGTTAGGGATGGGGTGGCAGTCACAAACTGCCTGGGTCTGACCCTTCAACCCAGC
AGCAGCTTGGGGTGGGTGGGATGAGGGAGAAGAGGAGCTGCCTTTGGAGGCTCCCTTCAC
CTGCAGCCATGACGCCCTTCCCCTTCATCTCCTTGTCCTCACCATATGCCTTACCCTAGT
CTATTCCCCTGCTATGCAAGTCCCCTTGTGCCTGTCCCCCACCCTCCGAACCAAGTTATC
TGGAAACCAGAATAATGCAGAAATTGCTGAGGTCGTACTTCCCCCCAGAGTATGATGGGG
ATGGGGAGGCTGGCCTCAGCGCAGGGCCCACTGGGAGAGGACCTGGATAGGTGGGCCCAG
GTCCAAGGGGCCGTGGCTGGTCTAGAGAAAGCCTTGTCTGCCCACACACACAGACCCCCA
TCGCAGTTTCCAGACACTGCCCTTGCTACATTCTCTGTCCATCTGTCTGTCTCTGTTAAT
AAAGACCTGTTGAACAGTTAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55960009|emb|CAI14184.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55960009|emb|CAI14184.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1069-1548, - strand, RNAz p=0.999466

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1069-1548, - strand, RNAz p=0.999466

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               272-474, gnl|bosTau2|chr8 (41415557-41415355)
               

               
               272-474, gnl|Hg17|chr9 (34627418-34627216)
               

               
               272-474, gnl|Mm7|chr4 (41879282-41879080)
               


               
               563-1366, gnl|bosTau2|chr8 (41414230-41413438)
               

               
               563-1366, gnl|Hg17|chr9 (34625859-34625025)
               

               
               563-1366, gnl|Mm7|chr4 (41877889-41877091)
               


               
               1400-1639, gnl|bosTau2|chr8 (41413428-41413199)
               

               
               1400-1639, gnl|Hg17|chr9 (34625004-34624722)
               

               
               1400-1639, gnl|Mm7|chr4 (41877048-41876798)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               272-474, gnl|bosTau2|chr8 (41415557-41415355)
               

               
               272-474, gnl|Hg17|chr9 (34627418-34627216)
               

               
               272-474, gnl|Mm7|chr4 (41879282-41879080)
               


               
               563-1366, gnl|bosTau2|chr8 (41414230-41413438)
               

               
               563-1366, gnl|Hg17|chr9 (34625859-34625025)
               

               
               563-1366, gnl|Mm7|chr4 (41877889-41877091)
               


               
               1400-1639, gnl|bosTau2|chr8 (41413428-41413199)
               

               
               1400-1639, gnl|Hg17|chr9 (34625004-34624722)
               

               
               1400-1639, gnl|Mm7|chr4 (41877048-41876798)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cga (0.558191)
               

               
               amn (0.417711)
               

               
               nje (0.33184)
               

               
               eep (0.245128)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               amn (0.417711)
               

               
               nje (0.33184)
               

               
               eep (0.245128)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	272-474, gnl\|bosTau2\|chr8 (41415557-41415355)
	272-474, gnl\|Hg17\|chr9 (34627418-34627216)
	272-474, gnl\|Mm7\|chr4 (41879282-41879080)

	563-1366, gnl\|bosTau2\|chr8 (41414230-41413438)
	563-1366, gnl\|Hg17\|chr9 (34625859-34625025)
	563-1366, gnl\|Mm7\|chr4 (41877889-41877091)

	1400-1639, gnl\|bosTau2\|chr8 (41413428-41413199)
	1400-1639, gnl\|Hg17\|chr9 (34625004-34624722)
	1400-1639, gnl\|Mm7\|chr4 (41877048-41876798)

	cga (0.558191)
	amn (0.417711)
	nje (0.33184)
	eep (0.245128)
	duo (0.172801)
	mcp (0.170648)
	cli (0.152812)
	hyp (0.142837)
	cov (0.132153)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)