Non-Coding RNA Search

Ss1.1-Spl1-SPL01D100086.5

Sequence:


               
               AGTTCCTGTTTCGGCCTCGGCTGTCCTGCTTCAGCCCCTAGGGCTCCCCTCAGACGCCTG
CTCTTCCTGCTCCGCCCGGGCCACGTCTTCCCGGGTGCTCGCCGCTCGCATCCTCGCTCG
CCCCGCCGGGGGATGGGCCCTTCCCCTGGCCTGGGCCGACCCTGCTGGGGTCCCCGAGGC
GACTCGGCCCCACCTTGACCGACCAGCCCGCCCGGTGCTGTGGCCCCCAGAATGAAGGGC
GGCGAGGGGGACGCGGGCGAACAGGCCCCGTTGAACCCGGAGGCCGAGAGCCCCGCGGGC
TCGGCCACGTACCGAGAGTTCGTGCACCGCGGCTACTTGGACCTCATGGGGGCCAGTCAG
CACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCTACCTCAGCCGGGCCAAGCTCAAAGCC
TCCAGCCGCACGTCTGCCCTGCTCTCGGGCTTCGCCATGGTGGCCATGGTAGAGGTACAG
CTGGAGAGCAAATACGAATACCCGCCGGGCCTGCTGGTGGCCTTTAGTGCCTGCACCACG
GTGCTGGTGGCTGTGCACCTCTTTGCACTCATGGTCTCCACGTGTCTGCTGCCTCATATT
GAAGCCGTTAGCAACATCCACAACCTCAACTCTGTCCACCAGTCTCCACACCAGCGACTC
CACCGCTATGTGGAGCTGGCCTGGGGCTTCTCCACTGCCTTGGGCACCTTCCTCTTCCTT
GCTGAAGTTGTCCTGGTTGGCTGGGTCAAGTTTGTGCCCATCGGGGCCCCCTCGGGCACA
TCAGCCCCCATGGTACCTGCCTCCCAGGTGCCTGGGACTCTGCCACCAGTGGCCACCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCCTGTTTCGGCCTCGGCTGTCCTGCTTCAGCCCCTAGGGCTCCCCTCAGACGCCTG
CTCTTCCTGCTCCGCCCGGGCCACGTCTTCCCGGGTGCTCGCCGCTCGCATCCTCGCTCG
CCCCGCCGGGGGATGGGCCCTTCCCCTGGCCTGGGCCGACCCTGCTGGGGTCCCCGAGGC
GACTCGGCCCCACCTTGACCGACCAGCCCGCCCGGTGCTGTGGCCCCCAGAATGAAGGGC
GGCGAGGGGGACGCGGGCGAACAGGCCCCGTTGAACCCGGAGGCCGAGAGCCCCGCGGGC
TCGGCCACGTACCGAGAGTTCGTGCACCGCGGCTACTTGGACCTCATGGGGGCCAGTCAG
CACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCTACCTCAGCCGGGCCAAGCTCAAAGCC
TCCAGCCGCACGTCTGCCCTGCTCTCGGGCTTCGCCATGGTGGCCATGGTAGAGGTACAG
CTGGAGAGCAAATACGAATACCCGCCGGGCCTGCTGGTGGCCTTTAGTGCCTGCACCACG
GTGCTGGTGGCTGTGCACCTCTTTGCACTCATGGTCTCCACGTGTCTGCTGCCTCATATT
GAAGCCGTTAGCAACATCCACAACCTCAACTCTGTCCACCAGTCTCCACACCAGCGACTC
CACCGCTATGTGGAGCTGGCCTGGGGCTTCTCCACTGCCTTGGGCACCTTCCTCTTCCTT
GCTGAAGTTGTCCTGGTTGGCTGGGTCAAGTTTGTGCCCATCGGGGCCCCCTCGGGCACA
TCAGCCCCCATGGTACCTGCCTCCCAGGTGCCTGGGACTCTGCCACCAGTGGCCACCGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q504L0_BRARE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q504L0_BRARE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               511-630, + strand, RNAz p=0.914112

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               511-630, + strand, RNAz p=0.914112

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               437-762, gnl|bosTau2|chr17 (28590471-28590797)
               

               
               437-762, gnl|Hg17|chr12 (120541651-120541969)
               

               
               437-762, gnl|Mm7|chr5 (122263269-122263599)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               437-762, gnl|bosTau2|chr17 (28590471-28590797)
               

               
               437-762, gnl|Hg17|chr12 (120541651-120541969)
               

               
               437-762, gnl|Mm7|chr5 (122263269-122263599)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	437-762, gnl\|bosTau2\|chr17 (28590471-28590797)
	437-762, gnl\|Hg17\|chr12 (120541651-120541969)
	437-762, gnl\|Mm7\|chr5 (122263269-122263599)