Ss1.1-Spl1-SPL01D100091.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTGCGGCGGCGAAGGCGGCGCGCGTCTTCCTCCTCCTACCGCGGGGCCAGAGTCGCTG ACGGTGTCCACTGCGCTCAAGTCTGGCCAGTGCCACCTATCTCCGCAATGCCCCCCAAGA AACAGGCGCAGGCCGGGGGCAGCAAAAAGGCGGAGCAGAAAAAAAAGGAGAAGATTATCG AAGATAAAACTTTTGGTCTAAAGAATAAGAAAGGAGCAAAGCAACAAAAATTTATCAAGG CCGTCACTCATCAAGTTAAATTTGGTCAACAAAATCCACGTCAGGTAGCACAAAGTGAAG CTGAAAAAAAGTTGAAGAAAGATGATAAGAAGAAAGAGTTGCAAGAGCTAAATGAGCTAT TCAAACCTGTAGTTGCTGCTCAAAAAAATAAGTAAAGGTGCAGATCCCAAATCTGTGGTA TGTGCATTCTTCAAGCAAGGACAGTGTACTAAAGGAGATAAATGTAAGTTCTCTCATGAC TTGACTCTGGAGAGAAAGTGTGAAAAGCGAAGTGTTTACATTGATGCAAGAGATGAAGAA CTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAACTGGAAGAAGTAGTGAACAAG AAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTT GAAGCTATTGAAAACAACAAATATGGCTGGTTTTGGGTATGCCCTGGAGGGGGTGATATT TGCATGTATCGTCATGCACTTCCTCCTGGATTTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTGCGGCGGCGAAGGCGGCGCGCGTCTTCCTCCTCCTACCGCGGGGCCAGAGTCGCTG ACGGTGTCCACTGCGCTCAAGTCTGGCCAGTGCCACCTATCTCCGCAATGCCCCCCAAGA AACAGGCGCAGGCCGGGGGCAGCAAAAAGGCGGAGCAGAAAAAAAAGGAGAAGATTATCG AAGATAAAACTTTTGGTCTAAAGAATAAGAAAGGAGCAAAGCAACAAAAATTTATCAAGG CCGTCACTCATCAAGTTAAATTTGGTCAACAAAATCCACGTCAGGTAGCACAAAGTGAAG CTGAAAAAAAGTTGAAGAAAGATGATAAGAAGAAAGAGTTGCAAGAGCTAAATGAGCTAT TCAAACCTGTAGTTGCTGCTCAAAAAAATAAGTAAAGGTGCAGATCCCAAATCTGTGGTA TGTGCATTCTTCAAGCAAGGACAGTGTACTAAAGGAGATAAATGTAAGTTCTCTCATGAC TTGACTCTGGAGAGAAAGTGTGAAAAGCGAAGTGTTTACATTGATGCAAGAGATGAAGAA CTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAACTGGAAGAAGTAGTGAACAAG AAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTT GAAGCTATTGAAAACAACAAATATGGCTGGTTTTGGGTATGCCCTGGAGGGGGTGATATT TGCATGTATCGTCATGCACTTCCTCCTGGATTTGTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 3-183, gnl|bosTau2|chr2 (4882575-4882759) | |
| 3-183, gnl|Hg17|chr2 (187176510-187176691) | |
| 3-183, gnl|Mm7|chr2 (83488270-83488444) | |
| 396-553, gnl|bosTau2|chr2 (4895884-4896041) | |
| 396-553, gnl|canFam2|chr36 (31766230-31766401) | |
| 396-553, gnl|danRer3|chr9 (13417693-13417863) | |
| 396-553, gnl|dasNov1|scaffold_3400 (25699-25846) | |
| 396-553, gnl|echTel1|scaffold_223275 (2195-2043) | |
| 396-553, gnl|fr1|chrUn (229224879-229225036) | |
| 396-553, gnl|galGal2|chr7 (1336174-1336003) | |
| 396-553, gnl|hg17|chr2 (187191490-187191661) | |
| 396-553, gnl|Hg17|chr2 (187191504-187191661) | |
| 396-553, gnl|loxAfr1|scaffold_684 (122203-122374) | |
| 396-553, gnl|mm7|chr2 (83501709-83501880) | |
| 396-553, gnl|Mm7|chr2 (83501723-83501880) | |
| 396-553, gnl|monDom2|scaffold_2 (90984694-90984865) | |
| 396-553, gnl|oryCun1|scaffold_213709 (35860-35695) | |
| 396-553, gnl|panTro1|chr13 (77021711-77021882) | |
| 396-553, gnl|rheMac2|chr12 (50114310-50114481) | |
| 396-553, gnl|rn3|chr3 (66730174-66730345) | |
| 396-553, gnl|tetNig1|chr17 (9202177-9202340) | |
| 396-553, gnl|xenTro1|scaffold_48 (2743406-2743243) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-183, gnl|bosTau2|chr2 (4882575-4882759) | |
| 3-183, gnl|Hg17|chr2 (187176510-187176691) | |
| 3-183, gnl|Mm7|chr2 (83488270-83488444) | |
| 396-553, gnl|bosTau2|chr2 (4895884-4896041) | |
| 396-553, gnl|canFam2|chr36 (31766230-31766401) | |
| 396-553, gnl|danRer3|chr9 (13417693-13417863) | |
| 396-553, gnl|dasNov1|scaffold_3400 (25699-25846) | |
| 396-553, gnl|echTel1|scaffold_223275 (2195-2043) | |
| 396-553, gnl|fr1|chrUn (229224879-229225036) | |
| 396-553, gnl|galGal2|chr7 (1336174-1336003) | |
| 396-553, gnl|hg17|chr2 (187191490-187191661) | |
| 396-553, gnl|Hg17|chr2 (187191504-187191661) | |
| 396-553, gnl|loxAfr1|scaffold_684 (122203-122374) | |
| 396-553, gnl|mm7|chr2 (83501709-83501880) | |
| 396-553, gnl|Mm7|chr2 (83501723-83501880) | |
| 396-553, gnl|monDom2|scaffold_2 (90984694-90984865) | |
| 396-553, gnl|oryCun1|scaffold_213709 (35860-35695) | |
| 396-553, gnl|panTro1|chr13 (77021711-77021882) | |
| 396-553, gnl|rheMac2|chr12 (50114310-50114481) | |
| 396-553, gnl|rn3|chr3 (66730174-66730345) | |
| 396-553, gnl|tetNig1|chr17 (9202177-9202340) | |
| 396-553, gnl|xenTro1|scaffold_48 (2743406-2743243) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cki (0.330469) | |
| sme (0.305437) | |
| sug (0.254582) | |
| sin (0.174948) | |
| nje (0.16592) | |
| nco (0.161734) | |
| lun (0.150489) | |
| csk (0.140746) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| sme (0.305437) | |
| sug (0.254582) | |
| sin (0.174948) | |
| nje (0.16592) | |
| nco (0.161734) | |
| lun (0.150489) | |
| csk (0.140746) | |
| jca (0.11396) |