Non-Coding RNA Search

Ss1.1-Spl1-SPL01D110033.5

Sequence:


               
               GTGAGAATTTTTGAAGTATACTTTTTTGTTCTAGGAGCAGGAGTGGGCTAAGGCTCAAAG
CCTGTGTGATTGGAGTTAAATCACAAGTTAAGGCCCACCAAGCCATTTACTGGTCAGTCT
TTGCAGTACCAGTCCTTCTGTTCACACTTGATTACTGCAGATGTGCTCCTTTTCCTGGGT
ATTCTGGATTTTTTCTTTCAAGGAACATGCTGCTCTGAGATTTGATGCTTTTGATAGGCG
GGAAAGAAGAAGCTGCAGATTTATGCTATAGTATGTAGATGATAGGCCAAAGTGACTGGC
CTTCAGGTTAGTCTCTAGTTTAAAAAAAAAAAGGCCTGGGCACTTCAATTGAAATATAGT
TTCTGAGCTCATGCTAGAGAGTATTGAGAAAGCAGTGTGAGTTTAAATGATGCAAGGGTT
TCCTGCTCTGGTAGGGATAAAGTAAACCCATCTTCCGAGTTGTTGGACATGGGGAGGGAG
AGGGCAGTGTGTGTATAAGAGAGAAAGAAACTTAGGAATTCCCTGTATGGGCCATTGAAA
CAGTGTGATCATGTCCCGAGACTTTTGTATTACCCCGAAGAAGCTTTTCTTAAGAGTTCT
CCCCTGCTACATAAGATGTCAGAGCTGTGTTGTCACACTTCATACCCTCAAAACAAGGCA
TGTTTCTTCCTCTCTGAAAGCCAGAGATCACTGCCAAAATAGTAAAGCTAAGGAGTGGGC
TTGATAGGGAAGGATGTGAAACTTTCGTTAGGCAATGAATCCCTGCGTACCTTGTGTTGT
TTCCAGGGCCCTGTGGGTCAGCCCCAGGGCATCTGATCACCAAAGGGGAAGTTTGCAAAG
GAAGCTTGGGAAATACAGCAAATAAAGTCCTCATTTCTGTTTTTGTAAGCACTGTGTAAT
GCATGTTGTTAACCTATACTGTGGTAGGCACTGCCATAGCTCTAAATGGGCTCAGGACAC
ACGGGCTGAAAACTGCTGTTGGCTTCGTGTAGGCTGTGAACCCCTTAGGTCACCAGCAGA
AAACAAGTTTCAGACCCCCCTGTGCAACACCTAAGCCCTGCAGAACCTGAAATAGGTAGC
AGAAGGAATGGAATGTCCCAGGTTCTGGGCCAGGCCGACCAGAGGAGCAAGCAAAGGTTT
GCGTGATTGGGACACTCAGGAAGAGCCATTCCAGAAGACATTGCAGGCTGTCTCACTTGA
TGACTTTGTATCCTTCTCCTTGGCTTTCTTTGAGGTGGCTGCATCAACCATTGATTGGGA
ATGTAAGGGAAGTTGGCTCTGGTGCTGCAAAATGAAAGGTGGAAGATGTCTTCCTTAAAA
CAAGGAAGGTTTCAGAAAGTACATTAGGTCACATGGTTAGGGAAAACAGATAAGAAAAAG
CTGTGAACTTGATTTTGTGGATTAAACAAAGCCAGGTGATTAAAATGTGATTTATTTATA
AAAAAAAAAAAAGTGCATATTTAAGATTTTGTTGTTTTTTAGTGGGGAGGGGGGTGTTGG
GGTGAAGCCTTCCTTTGCTGGAGTGGGCATAAAAAGCCAATCATCTAAGAGTTTGTCAAA
CTCACTATTTTAGAATCTCCATGCACAGGTATAATATTAACTCATGTCTTCAAAATCTCA
GCTGTCTGGGGATATTGCCCTCTTCTAGGGAACATGTGGGAATAAAGCATCTGGTGGTAT
TCTACTAAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGAATTTTTGAAGTATACTTTTTTGTTCTAGGAGCAGGAGTGGGCTAAGGCTCAAAG
CCTGTGTGATTGGAGTTAAATCACAAGTTAAGGCCCACCAAGCCATTTACTGGTCAGTCT
TTGCAGTACCAGTCCTTCTGTTCACACTTGATTACTGCAGATGTGCTCCTTTTCCTGGGT
ATTCTGGATTTTTTCTTTCAAGGAACATGCTGCTCTGAGATTTGATGCTTTTGATAGGCG
GGAAAGAAGAAGCTGCAGATTTATGCTATAGTATGTAGATGATAGGCCAAAGTGACTGGC
CTTCAGGTTAGTCTCTAGTTTAAAAAAAAAAAGGCCTGGGCACTTCAATTGAAATATAGT
TTCTGAGCTCATGCTAGAGAGTATTGAGAAAGCAGTGTGAGTTTAAATGATGCAAGGGTT
TCCTGCTCTGGTAGGGATAAAGTAAACCCATCTTCCGAGTTGTTGGACATGGGGAGGGAG
AGGGCAGTGTGTGTATAAGAGAGAAAGAAACTTAGGAATTCCCTGTATGGGCCATTGAAA
CAGTGTGATCATGTCCCGAGACTTTTGTATTACCCCGAAGAAGCTTTTCTTAAGAGTTCT
CCCCTGCTACATAAGATGTCAGAGCTGTGTTGTCACACTTCATACCCTCAAAACAAGGCA
TGTTTCTTCCTCTCTGAAAGCCAGAGATCACTGCCAAAATAGTAAAGCTAAGGAGTGGGC
TTGATAGGGAAGGATGTGAAACTTTCGTTAGGCAATGAATCCCTGCGTACCTTGTGTTGT
TTCCAGGGCCCTGTGGGTCAGCCCCAGGGCATCTGATCACCAAAGGGGAAGTTTGCAAAG
GAAGCTTGGGAAATACAGCAAATAAAGTCCTCATTTCTGTTTTTGTAAGCACTGTGTAAT
GCATGTTGTTAACCTATACTGTGGTAGGCACTGCCATAGCTCTAAATGGGCTCAGGACAC
ACGGGCTGAAAACTGCTGTTGGCTTCGTGTAGGCTGTGAACCCCTTAGGTCACCAGCAGA
AAACAAGTTTCAGACCCCCCTGTGCAACACCTAAGCCCTGCAGAACCTGAAATAGGTAGC
AGAAGGAATGGAATGTCCCAGGTTCTGGGCCAGGCCGACCAGAGGAGCAAGCAAAGGTTT
GCGTGATTGGGACACTCAGGAAGAGCCATTCCAGAAGACATTGCAGGCTGTCTCACTTGA
TGACTTTGTATCCTTCTCCTTGGCTTTCTTTGAGGTGGCTGCATCAACCATTGATTGGGA
ATGTAAGGGAAGTTGGCTCTGGTGCTGCAAAATGAAAGGTGGAAGATGTCTTCCTTAAAA
CAAGGAAGGTTTCAGAAAGTACATTAGGTCACATGGTTAGGGAAAACAGATAAGAAAAAG
CTGTGAACTTGATTTTGTGGATTAAACAAAGCCAGGTGATTAAAATGTGATTTATTTATA
AAAAAAAAAAAAGTGCATATTTAAGATTTTGTTGTTTTTTAGTGGGGAGGGGGGTGTTGG
GGTGAAGCCTTCCTTTGCTGGAGTGGGCATAAAAAGCCAATCATCTAAGAGTTTGTCAAA
CTCACTATTTTAGAATCTCCATGCACAGGTATAATATTAACTCATGTCTTCAAAATCTCA
GCTGTCTGGGGATATTGCCCTCTTCTAGGGAACATGTGGGAATAAAGCATCTGGTGGTAT
TCTACTAAAGGC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1-1114, gnl|bosTau2|chr10 (6308024-6309126)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1114, gnl|bosTau2|chr10 (6308024-6309126)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

Help | Less info


               
               pro (1.02407)
               

               
               cbl (0.688784)
               

               
               fco (0.628832)
               

               
               che (0.408942)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               cbl (0.688784)
               

               
               fco (0.628832)
               

               
               che (0.408942)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	pro (1.02407)
	cbl (0.688784)
	fco (0.628832)
	che (0.408942)
	sme (0.305437)
	cbe (0.239234)
	nms (0.213858)
	mas (0.210305)
	tes (0.207814)
	col (0.195008)
	ldo (0.194005)
	cmu (0.186393)
	gul (0.177588)
	eye (0.170503)
	fhi (0.169578)
	cje (0.165235)
	cki (0.165235)
	spl (0.143184)
	hyp (0.142837)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	ecc (0.115035)
	eje (0.0988338)