Non-Coding RNA Search

Ss1.1-Spl1-SPL01D110045.5.5

Sequence:


               
               TCATCTGCTACTCTCAGATCTGCTGCAAACTCTTCAAAACGGCCAAACAAAACCCGCTAA
CCGAGAAATCCGGTGTAAACAAAAAGGCTCTCAACACAATCATTTTCATAATTGTTGTGT
TTGTCGTCTGTTTCACCCCTTACCACGTTGCCATTATCCAGCACATGATTAAGAAGCTTC
ATTTTCCTAATCTTTTGGAATGTAGTGAAAGACATTCATTCCAGATAGCTCTGCACATCA
CGGTGTGCCTGATGAACTTCAACTGCTGCATGGACCCTTTCATATACTTCTTTGCGTGTA
AAGGGTACAAGAGGAAGGTCATGAAGATGCTGAAACGTCAAGTCAGCGTGTCAATTTCTA
GTGCTGTGAAGTCAGCCCCTGAAGAAAACTCCCGTGAAATGACGGAAACGCAAATGATGA
TCCATTCGAAGGCTTTAAATGGAAAGTAAAGAGGAATCAAATCTTGGATTTACAGCAAAA
TAAACTATGTGAGGAACTTTGCAGGACTTTTCTCATAAAGCAAAACAGTTGTTCCACTTC
CAGTGAGGATTCGGTTCCATTCCTTTCACTCGGTACCATTTCTCACCTCCAACTTGGAAG
TAAAACGGTATTTATGTATTTTTCACACTTAGGAGAACAACATTAAGCAAAGTTCTAATT
CGTAAATGAAGTCCTACACCAAAGGGAGAGTATGTGAATAACTCTCAGCGAAAAAAGACA
AGTTTGGTTTTAATGAAAAATTTAATCATTAATATTTCCCACCAATAATTTGGCAAAAGA
AAAAAAGACTGTTGGAGTTCCCGCCATGGCGCAGTGGGTTAAGAATCTGACTGCAGTGGC
TCGGGTCCCTGTGGAAGTGCAGGTTTGACCCCTGGCCTGATGCAGGGGGTTAAAGGATCT
GGTGTTGCTGTGGCTTGGGTGGCAGCTGTGGCTAACATTCAGTCCCTGGCCTGGGAACTG
CCACATGCCATGGGTGCAGCCATAAAAAGAAAAAAAAAGAAAAGAAGCAGAAGAAAGACT
GTTAAAAACTGTATATTGCCAATGTAGAAATGTTAATATTGTAACATCTTTCTTTTTTCT
TTTTTTTTTTTTTGGGAGGGGGATACCATTTCTTCAATTTCTAGTTCTTTAAATCTTAGA
CTTTATCTCCTCAATAATAACAGTCTTGTTTTGTTCTGAGTCATAGAATTTTGTTTCTAA
GAACTCTTTTGGAATAAAGAGCAGGATGCGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATCTGCTACTCTCAGATCTGCTGCAAACTCTTCAAAACGGCCAAACAAAACCCGCTAA
CCGAGAAATCCGGTGTAAACAAAAAGGCTCTCAACACAATCATTTTCATAATTGTTGTGT
TTGTCGTCTGTTTCACCCCTTACCACGTTGCCATTATCCAGCACATGATTAAGAAGCTTC
ATTTTCCTAATCTTTTGGAATGTAGTGAAAGACATTCATTCCAGATAGCTCTGCACATCA
CGGTGTGCCTGATGAACTTCAACTGCTGCATGGACCCTTTCATATACTTCTTTGCGTGTA
AAGGGTACAAGAGGAAGGTCATGAAGATGCTGAAACGTCAAGTCAGCGTGTCAATTTCTA
GTGCTGTGAAGTCAGCCCCTGAAGAAAACTCCCGTGAAATGACGGAAACGCAAATGATGA
TCCATTCGAAGGCTTTAAATGGAAAGTAAAGAGGAATCAAATCTTGGATTTACAGCAAAA
TAAACTATGTGAGGAACTTTGCAGGACTTTTCTCATAAAGCAAAACAGTTGTTCCACTTC
CAGTGAGGATTCGGTTCCATTCCTTTCACTCGGTACCATTTCTCACCTCCAACTTGGAAG
TAAAACGGTATTTATGTATTTTTCACACTTAGGAGAACAACATTAAGCAAAGTTCTAATT
CGTAAATGAAGTCCTACACCAAAGGGAGAGTATGTGAATAACTCTCAGCGAAAAAAGACA
AGTTTGGTTTTAATGAAAAATTTAATCATTAATATTTCCCACCAATAATTTGGCAAAAGA
AAAAAAGACTGTTGGAGTTCCCGCCATGGCGCAGTGGGTTAAGAATCTGACTGCAGTGGC
TCGGGTCCCTGTGGAAGTGCAGGTTTGACCCCTGGCCTGATGCAGGGGGTTAAAGGATCT
GGTGTTGCTGTGGCTTGGGTGGCAGCTGTGGCTAACATTCAGTCCCTGGCCTGGGAACTG
CCACATGCCATGGGTGCAGCCATAAAAAGAAAAAAAAAGAAAAGAAGCAGAAGAAAGACT
GTTAAAAACTGTATATTGCCAATGTAGAAATGTTAATATTGTAACATCTTTCTTTTTTCT
TTTTTTTTTTTTTGGGAGGGGGATACCATTTCTTCAATTTCTAGTTCTTTAAATCTTAGA
CTTTATCTCCTCAATAATAACAGTCTTGTTTTGTTCTGAGTCATAGAATTTTGTTTCTAA
GAACTCTTTTGGAATAAAGAGCAGGATGCGCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q80T40_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80T40_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               513-619, + strand, RNAz p=0.991818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-619, + strand, RNAz p=0.991818

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               3-619, gnl|bosTau2|chr12 (39900135-39899526)
               

               
               3-619, gnl|Hg17|chr13 (98745761-98745138)
               

               
               3-619, gnl|Mm7|chr14 (116359120-116358550)
               


               
               1000-1236, gnl|bosTau2|chr12 (39899342-39899119)
               

               
               1000-1236, gnl|canFam2|chr22 (52279500-52279786)
               

               
               1000-1236, gnl|dasNov1|scaffold_21942 (44870-45154)
               

               
               1000-1236, gnl|echTel1|scaffold_281060 (134-425)
               

               
               1000-1236, gnl|hg17|chr13 (98744693-98744983)
               

               
               1000-1236, gnl|Hg17|chr13 (98744999-98744793)
               

               
               1000-1236, gnl|loxAfr1|scaffold_3254 (37387-37110)
               

               
               1000-1236, gnl|mm7|chr14 (116358129-116358413)
               

               
               1000-1236, gnl|Mm7|chr14 (116358425-116358216)
               

               
               1000-1236, gnl|monDom2|scaffold_11 (53084729-53084456)
               

               
               1000-1236, gnl|panTro1|chr14 (82041168-82041458)
               

               
               1000-1236, gnl|rheMac2|chr17 (79667218-79667511)
               

               
               1000-1236, gnl|rn3|chr15 (107071976-107072231)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-619, gnl|bosTau2|chr12 (39900135-39899526)
               

               
               3-619, gnl|Hg17|chr13 (98745761-98745138)
               

               
               3-619, gnl|Mm7|chr14 (116359120-116358550)
               


               
               1000-1236, gnl|bosTau2|chr12 (39899342-39899119)
               

               
               1000-1236, gnl|canFam2|chr22 (52279500-52279786)
               

               
               1000-1236, gnl|dasNov1|scaffold_21942 (44870-45154)
               

               
               1000-1236, gnl|echTel1|scaffold_281060 (134-425)
               

               
               1000-1236, gnl|hg17|chr13 (98744693-98744983)
               

               
               1000-1236, gnl|Hg17|chr13 (98744999-98744793)
               

               
               1000-1236, gnl|loxAfr1|scaffold_3254 (37387-37110)
               

               
               1000-1236, gnl|mm7|chr14 (116358129-116358413)
               

               
               1000-1236, gnl|Mm7|chr14 (116358425-116358216)
               

               
               1000-1236, gnl|monDom2|scaffold_11 (53084729-53084456)
               

               
               1000-1236, gnl|panTro1|chr14 (82041168-82041458)
               

               
               1000-1236, gnl|rheMac2|chr17 (79667218-79667511)
               

               
               1000-1236, gnl|rn3|chr15 (107071976-107072231)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ute (0.265569)
               

               
               med (0.232504)
               

               
               liv (0.146284)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               med (0.232504)
               

               
               liv (0.146284)
               

               
               pty (0.142714)

	3-619, gnl\|bosTau2\|chr12 (39900135-39899526)
	3-619, gnl\|Hg17\|chr13 (98745761-98745138)
	3-619, gnl\|Mm7\|chr14 (116359120-116358550)

	1000-1236, gnl\|bosTau2\|chr12 (39899342-39899119)
	1000-1236, gnl\|canFam2\|chr22 (52279500-52279786)
	1000-1236, gnl\|dasNov1\|scaffold_21942 (44870-45154)
	1000-1236, gnl\|echTel1\|scaffold_281060 (134-425)
	1000-1236, gnl\|hg17\|chr13 (98744693-98744983)
	1000-1236, gnl\|Hg17\|chr13 (98744999-98744793)
	1000-1236, gnl\|loxAfr1\|scaffold_3254 (37387-37110)
	1000-1236, gnl\|mm7\|chr14 (116358129-116358413)
	1000-1236, gnl\|Mm7\|chr14 (116358425-116358216)
	1000-1236, gnl\|monDom2\|scaffold_11 (53084729-53084456)
	1000-1236, gnl\|panTro1\|chr14 (82041168-82041458)
	1000-1236, gnl\|rheMac2\|chr17 (79667218-79667511)
	1000-1236, gnl\|rn3\|chr15 (107071976-107072231)