Ss1.1-Spl1-SPL01E010079.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTGTGAGCAGCCGCGGCAGCGGCGGCGCGTCGTTGCAGTTGCGCCATCTGTCAGGAGC CGAGCCGGCTGGGAGGGGGGCTGCCGCGGAAGAGGAGGAGGGGTCGCCGCGAGCCGAAAG CCGCCGAGACCCGCCCGCCGGCCGGCCGCGGGAGCAGAGGCGAGGTTGCCTTCGGAGCCG CGCGTCCACCGCCGTCCGGGCGCGCGGCGGTTCACCCCGCGTACCGAAGGGCTCCCTGGG CGCACACAAAGCCGCCGCCCGCGCCGCACCGCCCGGCGGCCGCCGCCCGCGCCTGGGAGA GACCCGGCCGCCCGGCCGGGGACACCCGGCGCCGCCCCCTGGGCGCTCTCAGAAGGCCCA CCCGCTCCCGGGCCCGCCGAGGAGCCACCGGAGACGCTTCGGCCGCGCCAGAGGAGGGCG GGGAGAGGACCATGTGAATGGGCTCCGGAGCCTGAGCGCCGCGCAGGTAAGCTGCCGGGG ATGCGCCGCGGGATGTGGTGTATATAAAGTTTGCGATCGTTGGGGGACATTTTGGAATTT AGATAATGGGCTGTGTGCAATGTAAGGATAAAGAAGCAACAAAACTGACGGAGGAGCGGG ATGGCAGCCTGAACCAGAGCTCCGGCTTCCGCTATGGCACAGACCCCACTCCTCAGCACT ACCCCAGCTTCGGCGTGACCTCCATCCCAAACTACAACAACTTCCATGCAGCCGGGGGCC AAGGACTCACCGTCTTCGGGGGCGTGAGCTCTTCGTCTCACACTGGGACCTTGCGTACGA GAGGAGGAACAGGAGTGACGCTGTTTGTGGCCCTTTACGATTATGAAGCCCGGACGGAAG ATGACCTGAGTTTTCACAAAGGAGAAAAATTTCAAATACTGAACAGCTCGGAAGGAGACT GGTGGGAGGCCCGCTCCTTGACAACAGGAGAGACGGGTTACATTCCCAGCAATTACGTGG CTCCAGTTGACTCCATCCAGGCAGAAGAGTGGTACTTTGGAAAACTCGGCCGAAAAGATG CTGAGCGACAGCTTTTGTCCTTTGGAAACCCAAGAGGTACCTTTCTTATCCGTGAGAGTG AAACCACCAAAGGTGCCTATTCGCTTTCCATCCGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTGTGAGCAGCCGCGGCAGCGGCGGCGCGTCGTTGCAGTTGCGCCATCTGTCAGGAGC CGAGCCGGCTGGGAGGGGGGCTGCCGCGGAAGAGGAGGAGGGGTCGCCGCGAGCCGAAAG CCGCCGAGACCCGCCCGCCGGCCGGCCGCGGGAGCAGAGGCGAGGTTGCCTTCGGAGCCG CGCGTCCACCGCCGTCCGGGCGCGCGGCGGTTCACCCCGCGTACCGAAGGGCTCCCTGGG CGCACACAAAGCCGCCGCCCGCGCCGCACCGCCCGGCGGCCGCCGCCCGCGCCTGGGAGA GACCCGGCCGCCCGGCCGGGGACACCCGGCGCCGCCCCCTGGGCGCTCTCAGAAGGCCCA CCCGCTCCCGGGCCCGCCGAGGAGCCACCGGAGACGCTTCGGCCGCGCCAGAGGAGGGCG GGGAGAGGACCATGTGAATGGGCTCCGGAGCCTGAGCGCCGCGCAGGTAAGCTGCCGGGG ATGCGCCGCGGGATGTGGTGTATATAAAGTTTGCGATCGTTGGGGGACATTTTGGAATTT AGATAATGGGCTGTGTGCAATGTAAGGATAAAGAAGCAACAAAACTGACGGAGGAGCGGG ATGGCAGCCTGAACCAGAGCTCCGGCTTCCGCTATGGCACAGACCCCACTCCTCAGCACT ACCCCAGCTTCGGCGTGACCTCCATCCCAAACTACAACAACTTCCATGCAGCCGGGGGCC AAGGACTCACCGTCTTCGGGGGCGTGAGCTCTTCGTCTCACACTGGGACCTTGCGTACGA GAGGAGGAACAGGAGTGACGCTGTTTGTGGCCCTTTACGATTATGAAGCCCGGACGGAAG ATGACCTGAGTTTTCACAAAGGAGAAAAATTTCAAATACTGAACAGCTCGGAAGGAGACT GGTGGGAGGCCCGCTCCTTGACAACAGGAGAGACGGGTTACATTCCCAGCAATTACGTGG CTCCAGTTGACTCCATCCAGGCAGAAGAGTGGTACTTTGGAAAACTCGGCCGAAAAGATG CTGAGCGACAGCTTTTGTCCTTTGGAAACCCAAGAGGTACCTTTCTTATCCGTGAGAGTG AAACCACCAAAGGTGCCTATTCGCTTTCCATCCGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-265, gnl|bosTau2|chr9 (19658512-19658774) | |
| 1-265, gnl|Hg17|chr6 (112301331-112301066) | |
| 1-265, gnl|Mm7|chr10 (39149597-39149813) | |
| 279-492, gnl|bosTau2|chr9 (19658760-19658972) | |
| 279-492, gnl|canFam2|chr12 (71353860-71354300) | |
| 279-492, gnl|dasNov1|scaffold_2276 (136662-137149) | |
| 279-492, gnl|echTel1|scaffold_306920 (722-177) | |
| 279-492, gnl|hg17|chr6 (112300624-112301210) | |
| 279-492, gnl|Hg17|chr6 (112301080-112300835) | |
| 279-492, gnl|loxAfr1|scaffold_481 (103002-102437) | |
| 279-492, gnl|mm7|chr10 (39150166-39149716) | |
| 279-492, gnl|Mm7|chr10 (39149799-39150012) | |
| 279-492, gnl|monDom2|scaffold_0 (107744362-107743538) | |
| 279-492, gnl|panTro1|chr5 (114645401-114645987) | |
| 279-492, gnl|rn3|chr20 (43525150-43524700) | |
| 534-793, gnl|bosTau2|chr9 (19817091-19817350) | |
| 534-793, gnl|Hg17|chr6 (112147959-112147700) | |
| 534-793, gnl|Mm7|chr10 (39291537-39291796) | |
| 891-991, gnl|bosTau2|chr13 (49335264-49335164) | |
| 891-991, gnl|canFam2|chr24 (28979853-28979977) | |
| 891-991, gnl|danRer3|chr18 (19404127-19403997) | |
| 891-991, gnl|dasNov1|scaffold_238220 (743-614) | |
| 891-991, gnl|echTel1|scaffold_302812 (5916-6040) | |
| 891-991, gnl|fr1|chrUn (40130682-40130808) | |
| 891-991, gnl|galGal2|chr20 (4815683-4815803) | |
| 891-991, gnl|hg17|chr20 (35455708-35455834) | |
| 891-991, gnl|Hg17|chr20 (35455713-35455813) | |
| 891-991, gnl|loxAfr1|scaffold_132352 (4311-4185) | |
| 891-991, gnl|mm7|chr2 (157203596-157203719) | |
| 891-991, gnl|Mm7|chr2 (157203601-157203701) | |
| 891-991, gnl|monDom2|scaffold_6 (2197963-2197836) | |
| 891-991, gnl|oryCun1|scaffold_213597 (87662-87783) | |
| 891-991, gnl|panTro1|chr21 (37777640-37777766) | |
| 891-991, gnl|rheMac2|chr10 (27068319-27068193) | |
| 891-991, gnl|rn3|chr3 (148069062-148069185) | |
| 891-991, gnl|tetNig1|chr6 (4458084-4457957) | |
| 891-991, gnl|xenTro1|scaffold_637 (272029-272141) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-265, gnl|bosTau2|chr9 (19658512-19658774) | |
| 1-265, gnl|Hg17|chr6 (112301331-112301066) | |
| 1-265, gnl|Mm7|chr10 (39149597-39149813) | |
| 279-492, gnl|bosTau2|chr9 (19658760-19658972) | |
| 279-492, gnl|canFam2|chr12 (71353860-71354300) | |
| 279-492, gnl|dasNov1|scaffold_2276 (136662-137149) | |
| 279-492, gnl|echTel1|scaffold_306920 (722-177) | |
| 279-492, gnl|hg17|chr6 (112300624-112301210) | |
| 279-492, gnl|Hg17|chr6 (112301080-112300835) | |
| 279-492, gnl|loxAfr1|scaffold_481 (103002-102437) | |
| 279-492, gnl|mm7|chr10 (39150166-39149716) | |
| 279-492, gnl|Mm7|chr10 (39149799-39150012) | |
| 279-492, gnl|monDom2|scaffold_0 (107744362-107743538) | |
| 279-492, gnl|panTro1|chr5 (114645401-114645987) | |
| 279-492, gnl|rn3|chr20 (43525150-43524700) | |
| 534-793, gnl|bosTau2|chr9 (19817091-19817350) | |
| 534-793, gnl|Hg17|chr6 (112147959-112147700) | |
| 534-793, gnl|Mm7|chr10 (39291537-39291796) | |
| 891-991, gnl|bosTau2|chr13 (49335264-49335164) | |
| 891-991, gnl|canFam2|chr24 (28979853-28979977) | |
| 891-991, gnl|danRer3|chr18 (19404127-19403997) | |
| 891-991, gnl|dasNov1|scaffold_238220 (743-614) | |
| 891-991, gnl|echTel1|scaffold_302812 (5916-6040) | |
| 891-991, gnl|fr1|chrUn (40130682-40130808) | |
| 891-991, gnl|galGal2|chr20 (4815683-4815803) | |
| 891-991, gnl|hg17|chr20 (35455708-35455834) | |
| 891-991, gnl|Hg17|chr20 (35455713-35455813) | |
| 891-991, gnl|loxAfr1|scaffold_132352 (4311-4185) | |
| 891-991, gnl|mm7|chr2 (157203596-157203719) | |
| 891-991, gnl|Mm7|chr2 (157203601-157203701) | |
| 891-991, gnl|monDom2|scaffold_6 (2197963-2197836) | |
| 891-991, gnl|oryCun1|scaffold_213597 (87662-87783) | |
| 891-991, gnl|panTro1|chr21 (37777640-37777766) | |
| 891-991, gnl|rheMac2|chr10 (27068319-27068193) | |
| 891-991, gnl|rn3|chr3 (148069062-148069185) | |
| 891-991, gnl|tetNig1|chr6 (4458084-4457957) | |
| 891-991, gnl|xenTro1|scaffold_637 (272029-272141) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| ill (0.175593) | |
| cut (0.169924) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| ill (0.175593) | |
| cut (0.169924) | |
| eru (0.120048) |