Ss1.1-Spl1-SPL01E010081.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GATTGAGCCCAGGGGTACTGGTCTTTTACTCTGATATTCGACTCGGCCCCCGTTTTTTTA CTCTCCGAACCCGGGTGCCGTCCGGGATCCGCGGGGCAAGCGGCCAGCGGAGCAAAGGGG CGCTCAAGACCGCGTCGCCCGTCGGGCGCAGCGCGCGCCATGGCCGGCTGCTGCTGCCTG TCCGCGGAGGAGAAGGAGTCCCAGCGCATCAGCGCCGAGATCGAGCGGCAGCTTCGCCGG GACAAGAAGGACGCGCGCCGCGAGCTAAAGCTGCTGTTGTTGGGAACCGGTGAAAGTGGC AAAAGCACCTTTATCAAGCAAATGAGAATTATCCATGGGTCTGGTTACAGTGACGAAGAC AGAAAGGGGTTCACGAAGCTGGTTTATCAAAACATATTCACTGCCATGCAAGCCATGATC AGAGCCATGGACACCCTGAGGATACAGTACGTGTGTGAGCAGAATAAGGAGAATGCCCAG CTAATCAGAGAAGTGGAAGTAGACAAGGTCTCCGCACTCTCCAGGGACCAGGTGGAGGCC ATCAAGGAGCTCTGGCAGGACCCGGGAATCCAGGAGTGTTATGACAGGAGGAGGGAATAC CAGCTGTCAGACTCTGCTAAGTATTACCTGACTGACATTGACCGGATTGCCATGCCATCG TTTGTGCCAACACAGCAAGATGTGCTTCGTGTCCGTGTGCCCACAACTGGCATCATTGAA TATCCATTTGACTTGGAAAACATAATCTTTCGGATGGTGGATGTTGGTGGCCAGCGATCT GAAAGACGGAAATGGATTCATTGCTTTGAGAGTGTCACTTCCATAATTTTCTTGGTTGCT CTGAGTGAATATGACCAGGTCCTGGCTGAGTGTGATAATGAGAACCGCATGGAAGAGAGC AAAGCCTTATTTAAAACCATCATCACATACCCCTGGTTTCTGAACTCATCGGTGATTTTG TTCTTAAATAAGAAGGATCTTTTGGAAGAGAAAATCATGTACTCCCATCTAATTAGCTAT TTTCCAGAGTACACTGGACCAAAGCAAGATGTCAAAGCTGCCAGAGATTTTATCCTGAAA CTTTATCAAGATCAGAATCCTGACAAAGAGAAAGTCATCTATTCCCACTTCACATGTGCT ACAGACACAGAGAATATCCGCTTCGTGTTTGCTGCTGTGAAAGACACAATTCTACAACTA AACCTGAGGGAATTCAACCTGGTTTAGAAGCTGCTGCTCACTCCTCAGCCATGCCAGAAG ACCCAGTTTGCAAGCGGCCGATGTTTTATCTGAAAGTGCTTCTGACATCACCTGGCTCAG CTCACTGGGCTGTACCAAGTCCATCATGATGCCACAGGGACAGGGACAGGGATGGGTGAT GAAGCTTGTGAGATATGTGGATTTAGCAAAACTTTTTTCTAAGTCTTTATTCTCAAATTG TTTTTGTATTTCTTTTCTTGACTTGAGGCTGTAAGATTTTGTCTAATTTTTGAATTTGAT TATTTTACACAATTTCAAAAAGCCACTGTGAGTTGTTTTTTTTTTTTAATTAGTGTGTAA TAATAGCCATTTGAAAAATCACATAACAGAGTAGCCTGTCAATTTATAGATCATGCTTTG AGACCTCTAGGGTTAGTTTGAGTGCCTTTTTTTTTTTTTTTTAACTAAAATCTTATAATT AGTACTGAAGTAGCCTTTACTATGCCACCAAAGATTTTTTTTTAAGATAGTTTGTGTTAA ATTTCTAAGTCAAATTAATAACTGTATCAGTACCTCTAATTTAGTTTTGCCACAATTTGG TCACTATAAAACCAAAGTTGAATAAGATAAATGGGCTATACACAGCATATATCTTGTATT GGTGAAAAATGTGCCTGTATTTATATACATTCCACTGTAAATGACCTAGTCTTCTAAACT TATGAAATGGCTATAATCCTGCACTGTTTAACATATGTAATGTAACCCCTGCCAGAGCTC TGATGGCCACCACAGATTTGCTGTTTGAACCATGTATGCTGTGCCTTTCTGAGGCTAAGA ATATACCATTCT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GATTGAGCCCAGGGGTACTGGTCTTTTACTCTGATATTCGACTCGGCCCCCGTTTTTTTA CTCTCCGAACCCGGGTGCCGTCCGGGATCCGCGGGGCAAGCGGCCAGCGGAGCAAAGGGG CGCTCAAGACCGCGTCGCCCGTCGGGCGCAGCGCGCGCCATGGCCGGCTGCTGCTGCCTG TCCGCGGAGGAGAAGGAGTCCCAGCGCATCAGCGCCGAGATCGAGCGGCAGCTTCGCCGG GACAAGAAGGACGCGCGCCGCGAGCTAAAGCTGCTGTTGTTGGGAACCGGTGAAAGTGGC AAAAGCACCTTTATCAAGCAAATGAGAATTATCCATGGGTCTGGTTACAGTGACGAAGAC AGAAAGGGGTTCACGAAGCTGGTTTATCAAAACATATTCACTGCCATGCAAGCCATGATC AGAGCCATGGACACCCTGAGGATACAGTACGTGTGTGAGCAGAATAAGGAGAATGCCCAG CTAATCAGAGAAGTGGAAGTAGACAAGGTCTCCGCACTCTCCAGGGACCAGGTGGAGGCC ATCAAGGAGCTCTGGCAGGACCCGGGAATCCAGGAGTGTTATGACAGGAGGAGGGAATAC CAGCTGTCAGACTCTGCTAAGTATTACCTGACTGACATTGACCGGATTGCCATGCCATCG TTTGTGCCAACACAGCAAGATGTGCTTCGTGTCCGTGTGCCCACAACTGGCATCATTGAA TATCCATTTGACTTGGAAAACATAATCTTTCGGATGGTGGATGTTGGTGGCCAGCGATCT GAAAGACGGAAATGGATTCATTGCTTTGAGAGTGTCACTTCCATAATTTTCTTGGTTGCT CTGAGTGAATATGACCAGGTCCTGGCTGAGTGTGATAATGAGAACCGCATGGAAGAGAGC AAAGCCTTATTTAAAACCATCATCACATACCCCTGGTTTCTGAACTCATCGGTGATTTTG TTCTTAAATAAGAAGGATCTTTTGGAAGAGAAAATCATGTACTCCCATCTAATTAGCTAT TTTCCAGAGTACACTGGACCAAAGCAAGATGTCAAAGCTGCCAGAGATTTTATCCTGAAA CTTTATCAAGATCAGAATCCTGACAAAGAGAAAGTCATCTATTCCCACTTCACATGTGCT ACAGACACAGAGAATATCCGCTTCGTGTTTGCTGCTGTGAAAGACACAATTCTACAACTA AACCTGAGGGAATTCAACCTGGTTTAGAAGCTGCTGCTCACTCCTCAGCCATGCCAGAAG ACCCAGTTTGCAAGCGGCCGATGTTTTATCTGAAAGTGCTTCTGACATCACCTGGCTCAG CTCACTGGGCTGTACCAAGTCCATCATGATGCCACAGGGACAGGGACAGGGATGGGTGAT GAAGCTTGTGAGATATGTGGATTTAGCAAAACTTTTTTCTAAGTCTTTATTCTCAAATTG TTTTTGTATTTCTTTTCTTGACTTGAGGCTGTAAGATTTTGTCTAATTTTTGAATTTGAT TATTTTACACAATTTCAAAAAGCCACTGTGAGTTGTTTTTTTTTTTTAATTAGTGTGTAA TAATAGCCATTTGAAAAATCACATAACAGAGTAGCCTGTCAATTTATAGATCATGCTTTG AGACCTCTAGGGTTAGTTTGAGTGCCTTTTTTTTTTTTTTTTAACTAAAATCTTATAATT AGTACTGAAGTAGCCTTTACTATGCCACCAAAGATTTTTTTTTAAGATAGTTTGTGTTAA ATTTCTAAGTCAAATTAATAACTGTATCAGTACCTCTAATTTAGTTTTGCCACAATTTGG TCACTATAAAACCAAAGTTGAATAAGATAAATGGGCTATACACAGCATATATCTTGTATT GGTGAAAAATGTGCCTGTATTTATATACATTCCACTGTAAATGACCTAGTCTTCTAAACT TATGAAATGGCTATAATCCTGCACTGTTTAACATATGTAATGTAACCCCTGCCAGAGCTC TGATGGCCACCACAGATTTGCTGTTTGAACCATGTATGCTGTGCCTTTCTGAGGCTAAGA ATATACCATTCT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 24 entry(ies) | More info |
Aligned organism(s): 24 entry(ies) | Help | Less info |
277-469, gnl|bosTau2|chr16 (15244237-15244429) | |
277-469, gnl|Hg17|chr9 (77373729-77373538) | |
277-469, gnl|Mm7|chr19 (16234634-16234826) | |
752-882, gnl|bosTau2|chr16 (15357709-15357839) | |
752-882, gnl|canFam2|chr1 (84242693-84242542) | |
752-882, gnl|danRer3|chrUn (16853036-16852894) | |
752-882, gnl|dasNov1|scaffold_21145 (7125-7276) | |
752-882, gnl|echTel1|scaffold_314318 (4512-4663) | |
752-882, gnl|fr1|chrUn (238579971-238580109) | |
752-882, gnl|galGal2|chrZ (18156178-18156329) | |
752-882, gnl|hg17|chr9 (77273373-77273524) | |
752-882, gnl|Hg17|chr9 (77273507-77273377) | |
752-882, gnl|loxAfr1|scaffold_2519 (107693-107845) | |
752-882, gnl|mm7|chr19 (16306026-16305875) | |
752-882, gnl|Mm7|chr19 (16305890-16306020) | |
752-882, gnl|monDom2|scaffold_80 (5174261-5174412) | |
752-882, gnl|oryCun1|scaffold_194982 (6360-6501) | |
752-882, gnl|panTro1|chr11 (61156537-61156688) | |
752-882, gnl|rheMac2|chr15 (86151607-86151758) | |
752-882, gnl|rn3|chr1 (220141701-220141550) | |
752-882, gnl|tetNig1|chr12 (7192598-7192737) | |
752-882, gnl|xenTro1|scaffold_320 (322561-322711) | |
1033-2050, gnl|bosTau2|chr16 (15361517-15362509) | |
1033-2050, gnl|Hg17|chr9 (77268644-77267558) |
Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
277-469, gnl|bosTau2|chr16 (15244237-15244429) | |
277-469, gnl|Hg17|chr9 (77373729-77373538) | |
277-469, gnl|Mm7|chr19 (16234634-16234826) | |
752-882, gnl|bosTau2|chr16 (15357709-15357839) | |
752-882, gnl|canFam2|chr1 (84242693-84242542) | |
752-882, gnl|danRer3|chrUn (16853036-16852894) | |
752-882, gnl|dasNov1|scaffold_21145 (7125-7276) | |
752-882, gnl|echTel1|scaffold_314318 (4512-4663) | |
752-882, gnl|fr1|chrUn (238579971-238580109) | |
752-882, gnl|galGal2|chrZ (18156178-18156329) | |
752-882, gnl|hg17|chr9 (77273373-77273524) | |
752-882, gnl|Hg17|chr9 (77273507-77273377) | |
752-882, gnl|loxAfr1|scaffold_2519 (107693-107845) | |
752-882, gnl|mm7|chr19 (16306026-16305875) | |
752-882, gnl|Mm7|chr19 (16305890-16306020) | |
752-882, gnl|monDom2|scaffold_80 (5174261-5174412) | |
752-882, gnl|oryCun1|scaffold_194982 (6360-6501) | |
752-882, gnl|panTro1|chr11 (61156537-61156688) | |
752-882, gnl|rheMac2|chr15 (86151607-86151758) | |
752-882, gnl|rn3|chr1 (220141701-220141550) | |
752-882, gnl|tetNig1|chr12 (7192598-7192737) | |
752-882, gnl|xenTro1|scaffold_320 (322561-322711) | |
1033-2050, gnl|bosTau2|chr16 (15361517-15362509) | |
1033-2050, gnl|Hg17|chr9 (77268644-77267558) |
Expressed library(ies): 14 entry(ies) | More info |
Expressed library(ies): 14 entry(ies) | Help | Less info |
aor (0.390549) | |
gul (0.355177) | |
lun (0.150489) | |
lin (0.145603) | |
spl (0.143184) | |
pty (0.142714) | |
ste (0.135208) | |
pla (0.133672) | |
cov (0.132153) | |
kid (0.129735) | |
sug (0.127291) | |
bla (0.124347) | |
tra (0.123092) | |
spc (0.113366) |
Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
aor (0.390549) | |
gul (0.355177) | |
lun (0.150489) | |
lin (0.145603) | |
spl (0.143184) | |
pty (0.142714) | |
ste (0.135208) | |
pla (0.133672) | |
cov (0.132153) | |
kid (0.129735) | |
sug (0.127291) | |
bla (0.124347) | |
tra (0.123092) | |
spc (0.113366) |