Non-Coding RNA Search

Ss1.1-Spl1-SPL01E030031.5

Sequence:


               
               CGGCGGCTTCGACGGCGCCTTGAGCGCGGGCAGCGGCGGAGATTGAACTGAGCGAATTCA
GATATATAACTCAACCTTGTTAGAGGGCTTTTTTTTAAAAAAAAGAGTTGATTCGGTGCA
TGAGAGCAAGTTACTGCTGCTTACTGTTCAGAGACTTACAGGTGCTTGCCTGCATTGCAA
TAAAGGACTCATATATTGAGCAAGACTTATATTTATCTCTTCGTTTTGGAGAGCCTAATA
AACTGTTATTACAGTTTCTTTACTGACTTTCAAAAGTTTTGAACTTTGAAAGAGACATCT
TTACAATTAATACAGCATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTATC
CAGTCAAAATGGTCAGCTGAGGGGCCCTGTGAAGCCCAGTGGTGGCCCTGGAGGAGGGGG
CACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATGGCAC
TCAGCAGCAAGCACAGAGTATGACCGCCACTATTAAACCTGGTGATGAATAAATAAACAC
ACGTGGGGGGCCCAATGAGATTTATTTTGTTACTTTGTTGTTGACTATGTGCATCCTAAA
CATTTTGATTGCCAATAGAGGTCACATGCCTCTATGGCCCTGTAGGTATTTGCAATAGGA
TAATACATTTCTGTCATAATAAATTCAAGTTTATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGCTTCGACGGCGCCTTGAGCGCGGGCAGCGGCGGAGATTGAACTGAGCGAATTCA
GATATATAACTCAACCTTGTTAGAGGGCTTTTTTTTAAAAAAAAGAGTTGATTCGGTGCA
TGAGAGCAAGTTACTGCTGCTTACTGTTCAGAGACTTACAGGTGCTTGCCTGCATTGCAA
TAAAGGACTCATATATTGAGCAAGACTTATATTTATCTCTTCGTTTTGGAGAGCCTAATA
AACTGTTATTACAGTTTCTTTACTGACTTTCAAAAGTTTTGAACTTTGAAAGAGACATCT
TTACAATTAATACAGCATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTATC
CAGTCAAAATGGTCAGCTGAGGGGCCCTGTGAAGCCCAGTGGTGGCCCTGGAGGAGGGGG
CACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATGGCAC
TCAGCAGCAAGCACAGAGTATGACCGCCACTATTAAACCTGGTGATGAATAAATAAACAC
ACGTGGGGGGCCCAATGAGATTTATTTTGTTACTTTGTTGTTGACTATGTGCATCCTAAA
CATTTTGATTGCCAATAGAGGTCACATGCCTCTATGGCCCTGTAGGTATTTGCAATAGGA
TAATACATTTCTGTCATAATAAATTCAAGTTTATTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-313, - strand, RNAz p=0.993915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-313, - strand, RNAz p=0.993915

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-696, gnl|bosTau2|chr15 (14824674-14825341)
               

               
               40-696, gnl|Hg17|chr11 (118162439-118161782)
               

               
               40-696, gnl|Mm7|chr9 (44541466-44542110)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-696, gnl|bosTau2|chr15 (14824674-14825341)
               

               
               40-696, gnl|Hg17|chr11 (118162439-118161782)
               

               
               40-696, gnl|Mm7|chr9 (44541466-44542110)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	40-696, gnl\|bosTau2\|chr15 (14824674-14825341)
	40-696, gnl\|Hg17\|chr11 (118162439-118161782)
	40-696, gnl\|Mm7\|chr9 (44541466-44542110)