Non-Coding RNA Search

Ss1.1-Spl1-SPL01E030065.5

Sequence:


               
               AAAACTGCGCGCCCGCGGCCGGCGCCTGGGCTCTAGTCCCCGCCCTCCTGCCACCTGCCG
CCGCTTCGGTCGCGCCTGGCGGTGCGCCGCCCTGCCTAGCACTGCTCAGACCGAGCGGTC
AGGCCGAGAGCGGACCGCGCCCTTCGGCCAACTTCTCCCGCTGCCACCGCGCCGCCTCGC
GAGACCCGGGGCCGGGCCGTGGCCGCCGCCAAGCAGCAGGAAGAGAACCTCAGCGGAGGA
CGCTTGGCCGGACAGTGAGGCCAGTGGCCCTGCCCGGGCGCAGAGGGCGGCGGTGGCGGG
CTTTGCGGCCATCTCACAGTCCGGAGCCCGGCGAAGCCTAGACCTGGCGGGGAGAACTGC
ACCCTGGGCCGGGCCCCAGACCCCGCCGCCGCTGCCGCCACTGTCCATCATCCTCGGTGC
CGGCAATGGCCTTTGTATCGCCCGATGCACTTGTGACTGACTTGGACACGGGATATTAAC
AACCCACTCGCTTCCGTACCCATCCCAGCCACGCCGGCAGTAACCACCTCGGCTCGTTTA
GGCTTAACTGCTGCTCCTTGTGACTCTGTTCGACTTTGGGGGCACCATGGACCAAAATGG
GATGGAGATTCCTGTGACCCTCATCATTAAAGCACCGAATCAGAAATACAGTGACCAGAC
TATTAGCTGCTTCTTGAACTGGACCGTGGGGAAACTAAAAACGCATCTGTCTAACGTGTA
CCCTAGCAAACCATTGACGAAGGATCAGAGATTGGTGTATTCGGGCAGACTGCTTCCTGA
TCATCTGCAGCTGAAAGACATTCTCAGAAAACAAGATGAGTATCATATGGTTCATCTAGT
GTGTACTTCTCGGACTCCTCCCAGTTCTCCAAAGTCCAGCACCAGTAGAGAAAGTCATGA
TGAAACATCATTAATATCTTCCTGATGAGGTTCAGTTAATTAGTAAGAGTATAGGGAAAT
ATCAAGGGACACGAGAACTGGCAGGCATACAATAGGACCATTTTCCTTGGACTTAAAATG
GGGATGACAGATGCCTCTTTATCTTTTTTTAAAAAAGATGAAGTAGTACTACAACCCATC
TTAAAGCTCTTATCGCTTATTAGACTAAAATTCCTTTTTACTTGCAATGCCTGGCCCAGA
AATTTGCCGACTTGAAGAGCGAATTTTTTCTTGGAAATAAGTATGTGACCACAATAAAAG
TTATACGTTCCACTCTAGTATATATGTTTTAAGAAGCAAAGAGTTATATGTTTTAGATTC
ATTTTCCTTCTGCCCCCTTTCTCATTTTTCTCCTGTAGAGGACACAGAAAATTTTTTTTT
AATTTAGAAGAAAACAGTCCTTCTACCCCCATCATTTGGTTCATCTTTTATTCTTTTCAT
ACAGCCATTTGTAAATCATCGTGGCAGTGTTTTCCTTTCTGAATCATATCAGGACATTGC
AAAGATAATAAAATAGTACAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACTGCGCGCCCGCGGCCGGCGCCTGGGCTCTAGTCCCCGCCCTCCTGCCACCTGCCG
CCGCTTCGGTCGCGCCTGGCGGTGCGCCGCCCTGCCTAGCACTGCTCAGACCGAGCGGTC
AGGCCGAGAGCGGACCGCGCCCTTCGGCCAACTTCTCCCGCTGCCACCGCGCCGCCTCGC
GAGACCCGGGGCCGGGCCGTGGCCGCCGCCAAGCAGCAGGAAGAGAACCTCAGCGGAGGA
CGCTTGGCCGGACAGTGAGGCCAGTGGCCCTGCCCGGGCGCAGAGGGCGGCGGTGGCGGG
CTTTGCGGCCATCTCACAGTCCGGAGCCCGGCGAAGCCTAGACCTGGCGGGGAGAACTGC
ACCCTGGGCCGGGCCCCAGACCCCGCCGCCGCTGCCGCCACTGTCCATCATCCTCGGTGC
CGGCAATGGCCTTTGTATCGCCCGATGCACTTGTGACTGACTTGGACACGGGATATTAAC
AACCCACTCGCTTCCGTACCCATCCCAGCCACGCCGGCAGTAACCACCTCGGCTCGTTTA
GGCTTAACTGCTGCTCCTTGTGACTCTGTTCGACTTTGGGGGCACCATGGACCAAAATGG
GATGGAGATTCCTGTGACCCTCATCATTAAAGCACCGAATCAGAAATACAGTGACCAGAC
TATTAGCTGCTTCTTGAACTGGACCGTGGGGAAACTAAAAACGCATCTGTCTAACGTGTA
CCCTAGCAAACCATTGACGAAGGATCAGAGATTGGTGTATTCGGGCAGACTGCTTCCTGA
TCATCTGCAGCTGAAAGACATTCTCAGAAAACAAGATGAGTATCATATGGTTCATCTAGT
GTGTACTTCTCGGACTCCTCCCAGTTCTCCAAAGTCCAGCACCAGTAGAGAAAGTCATGA
TGAAACATCATTAATATCTTCCTGATGAGGTTCAGTTAATTAGTAAGAGTATAGGGAAAT
ATCAAGGGACACGAGAACTGGCAGGCATACAATAGGACCATTTTCCTTGGACTTAAAATG
GGGATGACAGATGCCTCTTTATCTTTTTTTAAAAAAGATGAAGTAGTACTACAACCCATC
TTAAAGCTCTTATCGCTTATTAGACTAAAATTCCTTTTTACTTGCAATGCCTGGCCCAGA
AATTTGCCGACTTGAAGAGCGAATTTTTTCTTGGAAATAAGTATGTGACCACAATAAAAG
TTATACGTTCCACTCTAGTATATATGTTTTAAGAAGCAAAGAGTTATATGTTTTAGATTC
ATTTTCCTTCTGCCCCCTTTCTCATTTTTCTCCTGTAGAGGACACAGAAAATTTTTTTTT
AATTTAGAAGAAAACAGTCCTTCTACCCCCATCATTTGGTTCATCTTTTATTCTTTTCAT
ACAGCCATTTGTAAATCATCGTGGCAGTGTTTTCCTTTCTGAATCATATCAGGACATTGC
AAAGATAATAAAATAGTACAGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62653367|ref|XP_576369.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62653367|ref|XP_576369.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-319, gnl|bosTau2|chr4 (33672246-33671934)
               

               
               1-319, gnl|Hg17|chr7 (35507978-35507651)
               


               
               322-733, gnl|bosTau2|chr4 (33671725-33671327)
               

               
               322-733, gnl|Hg17|chr7 (35507435-35507034)
               

               
               322-733, gnl|Mm7|chr9 (25035082-25034705)
               


               
               901-1461, gnl|bosTau2|chr4 (33671166-33670604)
               

               
               901-1461, gnl|Hg17|chr7 (35506874-35506021)
               

               
               901-1461, gnl|Mm7|chr9 (25034555-25034056)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-319, gnl|bosTau2|chr4 (33672246-33671934)
               

               
               1-319, gnl|Hg17|chr7 (35507978-35507651)
               


               
               322-733, gnl|bosTau2|chr4 (33671725-33671327)
               

               
               322-733, gnl|Hg17|chr7 (35507435-35507034)
               

               
               322-733, gnl|Mm7|chr9 (25035082-25034705)
               


               
               901-1461, gnl|bosTau2|chr4 (33671166-33670604)
               

               
               901-1461, gnl|Hg17|chr7 (35506874-35506021)
               

               
               901-1461, gnl|Mm7|chr9 (25034555-25034056)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ute (0.265569)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-319, gnl\|bosTau2\|chr4 (33672246-33671934)
	1-319, gnl\|Hg17\|chr7 (35507978-35507651)

	322-733, gnl\|bosTau2\|chr4 (33671725-33671327)
	322-733, gnl\|Hg17\|chr7 (35507435-35507034)
	322-733, gnl\|Mm7\|chr9 (25035082-25034705)

	901-1461, gnl\|bosTau2\|chr4 (33671166-33670604)
	901-1461, gnl\|Hg17\|chr7 (35506874-35506021)
	901-1461, gnl\|Mm7\|chr9 (25034555-25034056)