Non-Coding RNA Search

Ss1.1-Spl1-SPL01E030082.5

Sequence:


               
               AGACGGGCCCCAGAGGAGTCAAGCTCAAGGGCTGTTCCAACGAGCCAAACTTCGGTGAGC
CATCCCCGCCTCTGTCCCCATGGTCTCGGTCTCAGGTCTGTCCCGGGTTCCCCACCTCGG
CTTCTGCCCATCCCCCTTGTCACAGACGCAGCAGAGAACTGCACAGTGACTCCCTTCCTC
CGGATGGTGGCTTCTTCACTCAGCCACGTTTCTTTTGGCATTTGTCCTCCCCTGGGGGAG
ACTTGTTATCATCATCACTGGAATAACAGCTATAACAGCTACTGCCTGTATGCACCACCT
GCTGGGGGAAAGTCCTGGTTGGTGCCTTCTATCACTTCCAGGCTCCCGACAGTCCTGCAT
AGTGGGTGGCATCATCCCATTTTACGCATGAGGAGACTGAGGTTCATAGGGGTCAGACTT
ACACAAGGACACACAGCTGATAAGTGACCGAGTGGGGATTTGACCCCCCGCCCCCCCCGC
GCCCTGTCCTTTGACACGTCGTCTGCTGCAGTTCGCTGAGAAGGGTCCCGGCCGCTGGGG
GACTTAGGAGAGAGGCTGGGAGGCACTGTCCCTAAAGGAAAGGTGTGAAGAAACCCGAGG
CTAGAGGGAGCCTTCAGGATCTTCTCCCTTGGATCTTGCTAACAAGACCTGCCTCTCTCC
CTGCAGGATCCCTGTCCGCCCTGGTTTACCAGCACTCCATCATCCCCTTGGCTCTGCCCT
GTAAGCTGGTCATTCCAAACCGAGGTAGGAACCTGAGACTCCTTGCCCTCCAAGCGCTCC
CTTGTGTGGGCCTCCATCACGCCTCAGCTCAGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGGGCCCCAGAGGAGTCAAGCTCAAGGGCTGTTCCAACGAGCCAAACTTCGGTGAGC
CATCCCCGCCTCTGTCCCCATGGTCTCGGTCTCAGGTCTGTCCCGGGTTCCCCACCTCGG
CTTCTGCCCATCCCCCTTGTCACAGACGCAGCAGAGAACTGCACAGTGACTCCCTTCCTC
CGGATGGTGGCTTCTTCACTCAGCCACGTTTCTTTTGGCATTTGTCCTCCCCTGGGGGAG
ACTTGTTATCATCATCACTGGAATAACAGCTATAACAGCTACTGCCTGTATGCACCACCT
GCTGGGGGAAAGTCCTGGTTGGTGCCTTCTATCACTTCCAGGCTCCCGACAGTCCTGCAT
AGTGGGTGGCATCATCCCATTTTACGCATGAGGAGACTGAGGTTCATAGGGGTCAGACTT
ACACAAGGACACACAGCTGATAAGTGACCGAGTGGGGATTTGACCCCCCGCCCCCCCCGC
GCCCTGTCCTTTGACACGTCGTCTGCTGCAGTTCGCTGAGAAGGGTCCCGGCCGCTGGGG
GACTTAGGAGAGAGGCTGGGAGGCACTGTCCCTAAAGGAAAGGTGTGAAGAAACCCGAGG
CTAGAGGGAGCCTTCAGGATCTTCTCCCTTGGATCTTGCTAACAAGACCTGCCTCTCTCC
CTGCAGGATCCCTGTCCGCCCTGGTTTACCAGCACTCCATCATCCCCTTGGCTCTGCCCT
GTAAGCTGGTCATTCCAAACCGAGGTAGGAACCTGAGACTCCTTGCCCTCCAAGCGCTCC
CTTGTGTGGGCCTCCATCACGCCTCAGCTCAGCCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               700-816, + strand, RNAz p=0.744424

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               700-816, + strand, RNAz p=0.744424

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AB209238, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB209238, +

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               1-286, gnl|bosTau2|chr2 (63361125-63360846)
               

               
               1-286, gnl|Hg17|chr2 (218503497-218503181)
               

               
               1-286, gnl|Mm7|chr1 (74162810-74162475)
               


               
               308-647, gnl|bosTau2|chr2 (63360611-63360291)
               

               
               308-647, gnl|Hg17|chr2 (218503159-218502823)
               


               
               654-816, gnl|bosTau2|chr2 (63360150-63359986)
               

               
               654-816, gnl|Hg17|chr2 (218502689-218502525)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr2 (63361125-63360846)
               

               
               1-286, gnl|Hg17|chr2 (218503497-218503181)
               

               
               1-286, gnl|Mm7|chr1 (74162810-74162475)
               


               
               308-647, gnl|bosTau2|chr2 (63360611-63360291)
               

               
               308-647, gnl|Hg17|chr2 (218503159-218502823)
               


               
               654-816, gnl|bosTau2|chr2 (63360150-63359986)
               

               
               654-816, gnl|Hg17|chr2 (218502689-218502525)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-286, gnl\|bosTau2\|chr2 (63361125-63360846)
	1-286, gnl\|Hg17\|chr2 (218503497-218503181)
	1-286, gnl\|Mm7\|chr1 (74162810-74162475)

	308-647, gnl\|bosTau2\|chr2 (63360611-63360291)
	308-647, gnl\|Hg17\|chr2 (218503159-218502823)

	654-816, gnl\|bosTau2\|chr2 (63360150-63359986)
	654-816, gnl\|Hg17\|chr2 (218502689-218502525)