Ss1.1-Spl1-SPL01E040102.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAAATCCAAGGAAGGCTCCATGCTTCGGCGGCCTCGGACCTCCAGTCAACATACCACT CGGGGCGGACATAGTGACGACAATGAGGATGAAGGCGTGCCTGCCAGCTACCACACGGTG TCTTTACAGCTGCTAGACCTGATGCACACCCTGCACACAAGGGCGGCCTCTATCTACAGC TCCTGGGCGGAGGAGCAGCGCCACCTGGAGACAGGAGGCCGGAAGATTGAAGCGGACTCC CGCACCCTCTGGGCCCACTGCTGGTGCCCTTTACTGCAGGGTATTGCCTGCCTGTGCTGT GACGCCCGGCGCCAGGTACGGATGCAGGCACTGACCTATCTGCAACGAGCACTGCTGGTA CATGATCTGCAAAAATTAGATGCCCTGGAATGGGAGTCCTGTTTTAACAAGGTGCTGTTT CCTCTATTGACCAAGCTCTTGGAGAACATCAGCCCTGCAGATGTGGGCGGGATGGAGGAG ACCCGGATGAGGGCTTCCACACTGCTCTCGAAGGTCTTCCTGCAGCACCTGTCTCCACTG CTGTCACTCTCCACCTTCGCGGCCCTCTGGCTGACCATCCTGGACTTCATGGACAAGTAC ATGCACGCAGGCTCCAGTGACTTACTGTCAGAGGCCATCCCAGAGTCTCTGAAGAACATG CTCCTGGTGATGGACACGGCGGAGATTTTCCACAGTGCAGACGCCCGAGGAGGCAGCCCC TCAGCACTCTGGGAGATCACCTGGGAGCGCATCGACTGTTTCCTGCCCCACCTGCGAGAT GAGCTCTTCAAGCAGACTGTCATCCCGGACCCCGTGCCCATGGAGCCTCATGCCCCCAAA CCTCTGGCCTCAGCCCACCTGACTCCTGCTGCTGGGGACACCAGGACACCTGGCCATCCA CCTCCCCCAGAGATGCCTTCTGAACTGGGGACCTGTGACTTTGAGAAGCCGGAGGGCCCC CGACCTGCCAACAGCAGCTCTCCTGGGTCACCAGTGGTGTCCAGCCCCAGCAGGCTGAGT CCTACCCCAGATGGGCCTCCACCTCTGGCTCAGCCCCCACTGATCTTGCAGCCCTTGGCC TCCCCACTGCAGGTGGGCGTGCCCCCCATGACTCTGCCCATCATCCTCAACCCCGCTCTC ATCGAGGCCACCTCACCAGTGCCCCTCCTGGCCACACCCCGCCCCACAGACCCCATGCCT ACCTCTGAGGTCAACTAAGGCAGACCCTTCAGAGATCAGGACCAGTATTTCCTACAGGCT GTCCCTGGCCCCATCCAACTGTCCCAGAGGCCACAGACTTCAGTCCCAGCCCAAGCTGTT GTCACTGCTACTTGGATGGGGACCTGAAAGGAATTTTTATAGCTCCTCCTGGGACCCACA GTCTGTGGGACCTTCCTCCTCTGCTCTCCATTCCTGAGGGTTCAACCTGAGAGCACACTC AGGTATCACCTGCAGCCTGGCAGCTCTGGGAAGGCATCACTATACCAACCCTGCGTTGCC CGCCCTCATGCCCCTCCTGCCCGTGGTCAGGCATCAAGAGCCAAGCCAACCACTCTGCAC TTTGTTTCCCTCTCCCATCCTACTCTACTCCCATCAGCCCTGGGCCACCTCCTCTAGTTC TTCCTGTTTTATTAATTAGTTGGTCAGTTTGGAGAGCCGATTGGCACCATGGAGGGTGGC AGTTGGGGCTGGACAGAGGGACTGCCCACAGGAGCATGTACATATGGAAAACAGGACAAT GGACTTTTTATGATGTAATAAATGTCTTAGTACCAACAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAAATCCAAGGAAGGCTCCATGCTTCGGCGGCCTCGGACCTCCAGTCAACATACCACT CGGGGCGGACATAGTGACGACAATGAGGATGAAGGCGTGCCTGCCAGCTACCACACGGTG TCTTTACAGCTGCTAGACCTGATGCACACCCTGCACACAAGGGCGGCCTCTATCTACAGC TCCTGGGCGGAGGAGCAGCGCCACCTGGAGACAGGAGGCCGGAAGATTGAAGCGGACTCC CGCACCCTCTGGGCCCACTGCTGGTGCCCTTTACTGCAGGGTATTGCCTGCCTGTGCTGT GACGCCCGGCGCCAGGTACGGATGCAGGCACTGACCTATCTGCAACGAGCACTGCTGGTA CATGATCTGCAAAAATTAGATGCCCTGGAATGGGAGTCCTGTTTTAACAAGGTGCTGTTT CCTCTATTGACCAAGCTCTTGGAGAACATCAGCCCTGCAGATGTGGGCGGGATGGAGGAG ACCCGGATGAGGGCTTCCACACTGCTCTCGAAGGTCTTCCTGCAGCACCTGTCTCCACTG CTGTCACTCTCCACCTTCGCGGCCCTCTGGCTGACCATCCTGGACTTCATGGACAAGTAC ATGCACGCAGGCTCCAGTGACTTACTGTCAGAGGCCATCCCAGAGTCTCTGAAGAACATG CTCCTGGTGATGGACACGGCGGAGATTTTCCACAGTGCAGACGCCCGAGGAGGCAGCCCC TCAGCACTCTGGGAGATCACCTGGGAGCGCATCGACTGTTTCCTGCCCCACCTGCGAGAT GAGCTCTTCAAGCAGACTGTCATCCCGGACCCCGTGCCCATGGAGCCTCATGCCCCCAAA CCTCTGGCCTCAGCCCACCTGACTCCTGCTGCTGGGGACACCAGGACACCTGGCCATCCA CCTCCCCCAGAGATGCCTTCTGAACTGGGGACCTGTGACTTTGAGAAGCCGGAGGGCCCC CGACCTGCCAACAGCAGCTCTCCTGGGTCACCAGTGGTGTCCAGCCCCAGCAGGCTGAGT CCTACCCCAGATGGGCCTCCACCTCTGGCTCAGCCCCCACTGATCTTGCAGCCCTTGGCC TCCCCACTGCAGGTGGGCGTGCCCCCCATGACTCTGCCCATCATCCTCAACCCCGCTCTC ATCGAGGCCACCTCACCAGTGCCCCTCCTGGCCACACCCCGCCCCACAGACCCCATGCCT ACCTCTGAGGTCAACTAAGGCAGACCCTTCAGAGATCAGGACCAGTATTTCCTACAGGCT GTCCCTGGCCCCATCCAACTGTCCCAGAGGCCACAGACTTCAGTCCCAGCCCAAGCTGTT GTCACTGCTACTTGGATGGGGACCTGAAAGGAATTTTTATAGCTCCTCCTGGGACCCACA GTCTGTGGGACCTTCCTCCTCTGCTCTCCATTCCTGAGGGTTCAACCTGAGAGCACACTC AGGTATCACCTGCAGCCTGGCAGCTCTGGGAAGGCATCACTATACCAACCCTGCGTTGCC CGCCCTCATGCCCCTCCTGCCCGTGGTCAGGCATCAAGAGCCAAGCCAACCACTCTGCAC TTTGTTTCCCTCTCCCATCCTACTCTACTCCCATCAGCCCTGGGCCACCTCCTCTAGTTC TTCCTGTTTTATTAATTAGTTGGTCAGTTTGGAGAGCCGATTGGCACCATGGAGGGTGGC AGTTGGGGCTGGACAGAGGGACTGCCCACAGGAGCATGTACATATGGAAAACAGGACAAT GGACTTTTTATGATGTAATAAATGTCTTAGTACCAACAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 119-283, - strand, RNAz p=0.916419 | |
| 627-745, - strand, RNAz p=0.912131 | |
| 1366-1474, - strand, RNAz p=0.975762 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 119-283, - strand, RNAz p=0.916419 | |
| 627-745, - strand, RNAz p=0.912131 | |
| 1366-1474, - strand, RNAz p=0.975762 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 119-283, gnl|bosTau2|chr26 (14139590-14139426) | |
| 119-283, gnl|canFam2|chr28 (17893592-17893766) | |
| 119-283, gnl|danRer3|chr13 (4961498-4961651) | |
| 119-283, gnl|dasNov1|scaffold_115872 (4715-4890) | |
| 119-283, gnl|echTel1|scaffold_316526 (135139-135314) | |
| 119-283, gnl|galGal2|chr6 (16150674-16150851) | |
| 119-283, gnl|hg17|chr10 (104129018-104129193) | |
| 119-283, gnl|Hg17|chr10 (104129020-104129184) | |
| 119-283, gnl|loxAfr1|scaffold_13013 (36750-36925) | |
| 119-283, gnl|mm7|chr19 (46179657-46179835) | |
| 119-283, gnl|Mm7|chr19 (46179658-46179822) | |
| 119-283, gnl|monDom2|scaffold_14 (60960684-60960510) | |
| 119-283, gnl|oryCun1|scaffold_173060 (42214-42388) | |
| 119-283, gnl|panTro1|chr8 (105887979-105888154) | |
| 119-283, gnl|rheMac2|chr9 (102037238-102037413) | |
| 119-283, gnl|rn3|chr1 (251760935-251761113) | |
| 119-283, gnl|tetNig1|chrUn_random (102113372-102113207) | |
| 119-283, gnl|xenTro1|scaffold_507 (695036-694868) | |
| 407-515, gnl|bosTau2|chr26 (14139016-14138908) | |
| 407-515, gnl|Hg17|chr10 (104129595-104129703) | |
| 407-515, gnl|Mm7|chr19 (46180251-46180359) | |
| 627-808, gnl|bosTau2|chr26 (14138387-14138206) | |
| 627-808, gnl|Hg17|chr10 (104130252-104130433) | |
| 627-808, gnl|Mm7|chr19 (46180883-46181064) | |
| 937-1778, gnl|bosTau2|chr26 (14137451-14136603) | |
| 937-1778, gnl|Hg17|chr10 (104131802-104132643) | |
| 937-1778, gnl|Mm7|chr19 (46182293-46183141) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-283, gnl|bosTau2|chr26 (14139590-14139426) | |
| 119-283, gnl|canFam2|chr28 (17893592-17893766) | |
| 119-283, gnl|danRer3|chr13 (4961498-4961651) | |
| 119-283, gnl|dasNov1|scaffold_115872 (4715-4890) | |
| 119-283, gnl|echTel1|scaffold_316526 (135139-135314) | |
| 119-283, gnl|galGal2|chr6 (16150674-16150851) | |
| 119-283, gnl|hg17|chr10 (104129018-104129193) | |
| 119-283, gnl|Hg17|chr10 (104129020-104129184) | |
| 119-283, gnl|loxAfr1|scaffold_13013 (36750-36925) | |
| 119-283, gnl|mm7|chr19 (46179657-46179835) | |
| 119-283, gnl|Mm7|chr19 (46179658-46179822) | |
| 119-283, gnl|monDom2|scaffold_14 (60960684-60960510) | |
| 119-283, gnl|oryCun1|scaffold_173060 (42214-42388) | |
| 119-283, gnl|panTro1|chr8 (105887979-105888154) | |
| 119-283, gnl|rheMac2|chr9 (102037238-102037413) | |
| 119-283, gnl|rn3|chr1 (251760935-251761113) | |
| 119-283, gnl|tetNig1|chrUn_random (102113372-102113207) | |
| 119-283, gnl|xenTro1|scaffold_507 (695036-694868) | |
| 407-515, gnl|bosTau2|chr26 (14139016-14138908) | |
| 407-515, gnl|Hg17|chr10 (104129595-104129703) | |
| 407-515, gnl|Mm7|chr19 (46180251-46180359) | |
| 627-808, gnl|bosTau2|chr26 (14138387-14138206) | |
| 627-808, gnl|Hg17|chr10 (104130252-104130433) | |
| 627-808, gnl|Mm7|chr19 (46180883-46181064) | |
| 937-1778, gnl|bosTau2|chr26 (14137451-14136603) | |
| 937-1778, gnl|Hg17|chr10 (104131802-104132643) | |
| 937-1778, gnl|Mm7|chr19 (46182293-46183141) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fce (0.543183) | |
| ese (0.253004) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| ese (0.253004) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| cty (0.10408) | |
| nbm (0.0993246) |