Ss1.1-Spl1-SPL01E040103.5
|
AAAACTCAGATCCGCCACAGACGGGAAGGATGCAGGTCACGGAGCCTCGAACCCTCCTGC
TGGTGCTCTCGGGGTCCCTGGCCCTGACCGAGACCTGGGCAGGCCACCTTCACCACGGAC
CCAAGGACCCGCGTCTGGAGAAGGGTCAGACCCGGCCTCAGCCCCTCCCTGTTATAGGAT
CCCACTCGCTAAGATACCTCCATATTTTGGTATCCCGGCCCGGCCACGGTAGTGACCTTT
ACAGCTCTGTCGGTTTCTTGGACGACACGCAGTTCGTACGGTTCAGCAGCGATGCCGCGA
ATCCAAGGGTGGAGCCTCGGGCGCCGTGGATGGAGCAGGAGGGGCGGGAATATTGGGATC
GTCAGACTGATATAGCCAAAGAACATTCGAAGGCTTCAAGATCGAACCTGCGGGTGATCA
TTGGCAACCACAACCATAGCCAGTCGGAGTCGCACAGCTTTCTTTGGGTATCCGGCTGCG
ACGTGGGATCCGACGGGCGCATCCTTCGAGGGTACGAGCAGTTCTCCTACGACGGCGACG
ATTACATCGTCCTGAATGAAGACCTGCGCTCCTGGACCGCGATCAGTACAGTGGCTCAGA
TCATCCGGCGCAAGTGGGAGGCGGAGGGAGTAGCTGAACAGTATCGGGCATACTTGGAGA
TCGAGTGTGTGGAGTGGCTCCGCAAGTACCTCGAGAAGGGGAAGGACGTGCTGCAGCGCG
CAGTTCCTCCAAAGACTCATGTGACCCGCCACCCCTTCTATGACAATAAAGTCACTCTAA
GATGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGTGATGGGG
AGGACCAGACCCAGGACATGGAGCTCGTGGAGACCAGGCCTTCAGGGGATGGGACCTTCC
AGAAGTGGGCGGCCCTGGTGGTGCCTTCTGGAGAGGAGCAGAGCTACACCTGCCAGGTGC
AGCACGAGGGCCTGCAGGAGCCCCTCACCCTGAGATGGGAGCCACCTCCTCTGTCCCTCA
ACCTCATCATGATTTGCATTGCTGTGAGTGTGCTTGTGGTCACTGTGCTTGGAACTGTGA
TCTGGAGAAAGAGGAACTCAGGTGGAAATAGAGGGAACTATGTTCAGGCTGCAAGCTGAC
TTGTGTGGGACTGAGTGAAGAAAGATTTGTTCATGCCCCCAAGCTGTGACTTCAGAACCT
GGCCTTCTGTTTTCCTAGAGGGCTTCTGAATGTGTCTGCCTTGCTGTAGTTTCATGTGAG
GAAGTGCCGAGGTTAACCCATCCCTGCCCAGCGCGGCCCCCAGTCCCCCTATAGCATTGT
GTGTTTGCATGTAGGGTATATCTCAGCTGTGGGCAGTTCTTTGTATATCAATGTTGCTTC
AATAAAGCTGTGTGAAAAATAATATCACTTTGAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAACTCAGATCCGCCACAGACGGGAAGGATGCAGGTCACGGAGCCTCGAACCCTCCTGC
TGGTGCTCTCGGGGTCCCTGGCCCTGACCGAGACCTGGGCAGGCCACCTTCACCACGGAC
CCAAGGACCCGCGTCTGGAGAAGGGTCAGACCCGGCCTCAGCCCCTCCCTGTTATAGGAT
CCCACTCGCTAAGATACCTCCATATTTTGGTATCCCGGCCCGGCCACGGTAGTGACCTTT
ACAGCTCTGTCGGTTTCTTGGACGACACGCAGTTCGTACGGTTCAGCAGCGATGCCGCGA
ATCCAAGGGTGGAGCCTCGGGCGCCGTGGATGGAGCAGGAGGGGCGGGAATATTGGGATC
GTCAGACTGATATAGCCAAAGAACATTCGAAGGCTTCAAGATCGAACCTGCGGGTGATCA
TTGGCAACCACAACCATAGCCAGTCGGAGTCGCACAGCTTTCTTTGGGTATCCGGCTGCG
ACGTGGGATCCGACGGGCGCATCCTTCGAGGGTACGAGCAGTTCTCCTACGACGGCGACG
ATTACATCGTCCTGAATGAAGACCTGCGCTCCTGGACCGCGATCAGTACAGTGGCTCAGA
TCATCCGGCGCAAGTGGGAGGCGGAGGGAGTAGCTGAACAGTATCGGGCATACTTGGAGA
TCGAGTGTGTGGAGTGGCTCCGCAAGTACCTCGAGAAGGGGAAGGACGTGCTGCAGCGCG
CAGTTCCTCCAAAGACTCATGTGACCCGCCACCCCTTCTATGACAATAAAGTCACTCTAA
GATGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGTGATGGGG
AGGACCAGACCCAGGACATGGAGCTCGTGGAGACCAGGCCTTCAGGGGATGGGACCTTCC
AGAAGTGGGCGGCCCTGGTGGTGCCTTCTGGAGAGGAGCAGAGCTACACCTGCCAGGTGC
AGCACGAGGGCCTGCAGGAGCCCCTCACCCTGAGATGGGAGCCACCTCCTCTGTCCCTCA
ACCTCATCATGATTTGCATTGCTGTGAGTGTGCTTGTGGTCACTGTGCTTGGAACTGTGA
TCTGGAGAAAGAGGAACTCAGGTGGAAATAGAGGGAACTATGTTCAGGCTGCAAGCTGAC
TTGTGTGGGACTGAGTGAAGAAAGATTTGTTCATGCCCCCAAGCTGTGACTTCAGAACCT
GGCCTTCTGTTTTCCTAGAGGGCTTCTGAATGTGTCTGCCTTGCTGTAGTTTCATGTGAG
GAAGTGCCGAGGTTAACCCATCCCTGCCCAGCGCGGCCCCCAGTCCCCCTATAGCATTGT
GTGTTTGCATGTAGGGTATATCTCAGCTGTGGGCAGTTCTTTGTATATCAATGTTGCTTC
AATAAAGCTGTGTGAAAAATAATATCACTTTGAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
100-447, gnl|bosTau2|chr23 (23177934-23177588) |
|
100-447, gnl|Hg17|chr6 (29868143-29868466) |
|
100-447, gnl|Mm7|chr17 (33358684-33358997) |
| |
|
481-731, gnl|bosTau2|chr20 (36655627-36655873) |
|
481-731, gnl|Hg17|chr6 (31347071-31346829) |
|
481-731, gnl|Mm7|chr17 (32077846-32077606) |
| |
|
773-999, gnl|bosTau2|chr7 (27038140-27037914) |
|
773-999, gnl|Hg17|chr6 (31346192-31345966) |
|
773-999, gnl|Mm7|chr13 (23071892-23071663) |
| |
|
774-988, gnl|bosTau2|chr23 (24252953-24252736) |
|
774-988, gnl|Hg17|chr6 (26200939-26201156) |
|
774-988, gnl|Mm7|chr13 (23071891-23071674) |
| |
|
1137-1322, gnl|bosTau2|chr23 (23174564-23174378) |
|
1137-1322, gnl|Hg17|chr6 (29878344-29878504) |
|
1137-1322, gnl|Mm7|chr17 (33362235-33362392) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
100-447, gnl|bosTau2|chr23 (23177934-23177588) |
|
100-447, gnl|Hg17|chr6 (29868143-29868466) |
|
100-447, gnl|Mm7|chr17 (33358684-33358997) |
| |
|
481-731, gnl|bosTau2|chr20 (36655627-36655873) |
|
481-731, gnl|Hg17|chr6 (31347071-31346829) |
|
481-731, gnl|Mm7|chr17 (32077846-32077606) |
| |
|
773-999, gnl|bosTau2|chr7 (27038140-27037914) |
|
773-999, gnl|Hg17|chr6 (31346192-31345966) |
|
773-999, gnl|Mm7|chr13 (23071892-23071663) |
| |
|
774-988, gnl|bosTau2|chr23 (24252953-24252736) |
|
774-988, gnl|Hg17|chr6 (26200939-26201156) |
|
774-988, gnl|Mm7|chr13 (23071891-23071674) |
| |
|
1137-1322, gnl|bosTau2|chr23 (23174564-23174378) |
|
1137-1322, gnl|Hg17|chr6 (29878344-29878504) |
|
1137-1322, gnl|Mm7|chr17 (33362235-33362392) |
|
csp (0.805932) |
|
cly (0.723851) |
|
cki (0.495704) |
|
cje (0.495704) |
|
cag (0.302389) |
|
che (0.272628) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
gul (0.177588) |
|
cut (0.169924) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ese (0.126502) |
|
med (0.116252) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
csp (0.805932) |
|
cly (0.723851) |
|
cki (0.495704) |
|
cje (0.495704) |
|
cag (0.302389) |
|
che (0.272628) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
gul (0.177588) |
|
cut (0.169924) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ese (0.126502) |
|
med (0.116252) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
jej (0.0989218) |
