Ss1.1-Spl1-SPL01E050093.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTTCTGACACAACCGTGTTCACTAGCAACTGCACAAACAGACAACATGGTGCATCTGT CTGCTGAGGAGAAGGAGGCCGTCCTCGGCCTGTGGGGCAAAGTGAATGTGGACGAAGTTG GTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCCTGGACTCAGAGGTTCTTCGAGT CCTTTGGGGACCTGTCCAATGCCGATGCCGTCATGGGCAATCCCAAGGTGAAGGCCCACG GCAAGAAGGTGCTCCAGTCCTTCAGTGACGGCCTGAAACATCTCGACAACCTCAAGGGCA CCTTTGCTAAGCTGAGCGAGCTGCACTGTGACCAGCTGCACGTGGATCCTGAGAACTTCA GGCTCCTGGGCAACGTGATAGTGGTTGTTCTGGCTCGCCGCCTTGGCCATGACTTCAACC CGGATGTGCAGGCTGCTTTTCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGGCCCACA AGTACCACTAAGTTCCCCTTCCTGATTTCCAGGAGGAGCCCTTTTTCCTCTGAACCCAAA AACTGGATATGGAAATATTATGAAGAGTTTTGAGCATCTGGCCTCTGCGTAATAAAAACA TTTATTTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAATGTAAATAAATGAGGGGCTAATTGAGACTTTGA AGAAAGCTCTCTGTACCTTGGACCCCATGAAAGGAGTGGTTGTAAAGCACGCATGTGAGT GGGAATACACTTATACCTCTTCCTTTCCTTTAGAAAAGGAATCAAGCTTGATTGGCGAGT TCGATTACTGTGATGTTTCATTAAAATCAATTATTTCACTTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTTCTGACACAACCGTGTTCACTAGCAACTGCACAAACAGACAACATGGTGCATCTGT CTGCTGAGGAGAAGGAGGCCGTCCTCGGCCTGTGGGGCAAAGTGAATGTGGACGAAGTTG GTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCCTGGACTCAGAGGTTCTTCGAGT CCTTTGGGGACCTGTCCAATGCCGATGCCGTCATGGGCAATCCCAAGGTGAAGGCCCACG GCAAGAAGGTGCTCCAGTCCTTCAGTGACGGCCTGAAACATCTCGACAACCTCAAGGGCA CCTTTGCTAAGCTGAGCGAGCTGCACTGTGACCAGCTGCACGTGGATCCTGAGAACTTCA GGCTCCTGGGCAACGTGATAGTGGTTGTTCTGGCTCGCCGCCTTGGCCATGACTTCAACC CGGATGTGCAGGCTGCTTTTCAGAAGGTGGTGGCTGGTGTGGCCAATGCCCTGGCCCACA AGTACCACTAAGTTCCCCTTCCTGATTTCCAGGAGGAGCCCTTTTTCCTCTGAACCCAAA AACTGGATATGGAAATATTATGAAGAGTTTTGAGCATCTGGCCTCTGCGTAATAAAAACA TTTATTTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAATGTAAATAAATGAGGGGCTAATTGAGACTTTGA AGAAAGCTCTCTGTACCTTGGACCCCATGAAAGGAGTGGTTGTAAAGCACGCATGTGAGT GGGAATACACTTATACCTCTTCCTTTCCTTTAGAAAAGGAATCAAGCTTGATTGGCGAGT TCGATTACTGTGATGTTTCATTAAAATCAATTATTTCACTTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 441-552, - strand, RNAz p=0.836906 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 441-552, - strand, RNAz p=0.836906 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 138-360, gnl|bosTau2|chr15 (31547969-31548191) | |
| 138-360, gnl|canFam2|chr21 (31297816-31297969) | |
| 138-360, gnl|danRer3|chr14 (52027702-52027855) | |
| 138-360, gnl|dasNov1|scaffold_13030 (34989-34836) | |
| 138-360, gnl|echTel1|scaffold_291727 (50072-49919) | |
| 138-360, gnl|fr1|chrUn (269727330-269727483) | |
| 138-360, gnl|galGal2|chr1 (188136630-188136477) | |
| 138-360, gnl|hg17|chr11 (5204379-5204532) | |
| 138-360, gnl|Hg17|chr11 (5204607-5204385) | |
| 138-360, gnl|loxAfr1|scaffold_3994 (95353-95200) | |
| 138-360, gnl|mm7|chr7 (99864254-99864406) | |
| 138-360, gnl|Mm7|chr7 (99883651-99883429) | |
| 138-360, gnl|monDom2|scaffold_111 (1430434-1430587) | |
| 138-360, gnl|oryCun1|scaffold_212048 (55125-55278) | |
| 138-360, gnl|panTro1|chr9 (5283210-5283363) | |
| 138-360, gnl|rheMac2|chr14 (68175209-68175056) | |
| 138-360, gnl|rn3|chr1 (161701009-161701162) | |
| 138-360, gnl|tetNig1|chr2 (3548897-3548740) | |
| 138-360, gnl|xenTro1|scaffold_289 (335758-335605) | |
| 362-612, gnl|bosTau2|chr15 (31549093-31549344) | |
| 362-612, gnl|Mm7|chr7 (99882773-99882515) | |
| 690-882, gnl|bosTau2|chr15 (31621034-31621236) | |
| 690-882, gnl|canFam2|chr21 (31296622-31296885) | |
| 690-882, gnl|hg17|chr11 (5202911-5203192) | |
| 690-882, gnl|Hg17|chr11 (5203200-5203000) | |
| 690-882, gnl|loxAfr1|scaffold_3994 (99946-99646) | |
| 690-882, gnl|mm7|chr7 (99862909-99863184) | |
| 690-882, gnl|Mm7|chr7 (99882452-99882275) | |
| 690-882, gnl|oryCun1|scaffold_212362 (68113-67923) | |
| 690-882, gnl|panTro1|chr9 (5281742-5282023) | |
| 690-882, gnl|rheMac2|chr14 (68176684-68176405) | |
| 690-882, gnl|rn3|chr1 (161699741-161700005) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 138-360, gnl|bosTau2|chr15 (31547969-31548191) | |
| 138-360, gnl|canFam2|chr21 (31297816-31297969) | |
| 138-360, gnl|danRer3|chr14 (52027702-52027855) | |
| 138-360, gnl|dasNov1|scaffold_13030 (34989-34836) | |
| 138-360, gnl|echTel1|scaffold_291727 (50072-49919) | |
| 138-360, gnl|fr1|chrUn (269727330-269727483) | |
| 138-360, gnl|galGal2|chr1 (188136630-188136477) | |
| 138-360, gnl|hg17|chr11 (5204379-5204532) | |
| 138-360, gnl|Hg17|chr11 (5204607-5204385) | |
| 138-360, gnl|loxAfr1|scaffold_3994 (95353-95200) | |
| 138-360, gnl|mm7|chr7 (99864254-99864406) | |
| 138-360, gnl|Mm7|chr7 (99883651-99883429) | |
| 138-360, gnl|monDom2|scaffold_111 (1430434-1430587) | |
| 138-360, gnl|oryCun1|scaffold_212048 (55125-55278) | |
| 138-360, gnl|panTro1|chr9 (5283210-5283363) | |
| 138-360, gnl|rheMac2|chr14 (68175209-68175056) | |
| 138-360, gnl|rn3|chr1 (161701009-161701162) | |
| 138-360, gnl|tetNig1|chr2 (3548897-3548740) | |
| 138-360, gnl|xenTro1|scaffold_289 (335758-335605) | |
| 362-612, gnl|bosTau2|chr15 (31549093-31549344) | |
| 362-612, gnl|Mm7|chr7 (99882773-99882515) | |
| 690-882, gnl|bosTau2|chr15 (31621034-31621236) | |
| 690-882, gnl|canFam2|chr21 (31296622-31296885) | |
| 690-882, gnl|hg17|chr11 (5202911-5203192) | |
| 690-882, gnl|Hg17|chr11 (5203200-5203000) | |
| 690-882, gnl|loxAfr1|scaffold_3994 (99946-99646) | |
| 690-882, gnl|mm7|chr7 (99862909-99863184) | |
| 690-882, gnl|Mm7|chr7 (99882452-99882275) | |
| 690-882, gnl|oryCun1|scaffold_212362 (68113-67923) | |
| 690-882, gnl|panTro1|chr9 (5281742-5282023) | |
| 690-882, gnl|rheMac2|chr14 (68176684-68176405) | |
| 690-882, gnl|rn3|chr1 (161699741-161700005) |
| Expressed library(ies): 60 entry(ies) | More info |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
| nbm (226.261) | |
| eli (181.57) | |
| nca (60.6351) | |
| elu (31.2139) | |
| fli (29.6206) | |
| csp (29.3359) | |
| eep (27.3318) | |
| cbl (20.4339) | |
| ese (17.8368) | |
| eru (15.3661) | |
| nlu (14.3761) | |
| nmm (13.1474) | |
| amn (6.26566) | |
| eye (4.43308) | |
| eje (4.24985) | |
| ute (3.98353) | |
| ebs (3.90394) | |
| fty (2.98927) | |
| nep (2.75887) | |
| nco (2.74947) | |
| med (2.6738) | |
| jca (2.62108) | |
| hlv (2.36736) | |
| ece (1.83444) | |
| cly (1.4477) | |
| pty (1.28443) | |
| nms (1.28315) | |
| ecc (1.26539) | |
| lnt (1.13847) | |
| hea (1.02249) | |
| nje (0.99552) | |
| hyp (0.85702) | |
| fce (0.814775) | |
| cov (0.792917) | |
| fat (0.737137) | |
| fbs (0.701385) | |
| spc (0.680195) | |
| fhi (0.678311) | |
| ssp (0.677599) | |
| cag (0.604778) | |
| pgl (0.592417) | |
| che (0.545256) | |
| cje (0.495704) | |
| spl (0.429553) | |
| mas (0.42061) | |
| ova (0.387397) | |
| gul (0.355177) | |
| ton (0.351) | |
| cli (0.305623) | |
| jej (0.296765) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ste (0.270416) | |
| ldo (0.194005) | |
| duo (0.172801) | |
| cut (0.169924) | |
| ski (0.146735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| clu (0.119646) |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (226.261) | |
| eli (181.57) | |
| nca (60.6351) | |
| elu (31.2139) | |
| fli (29.6206) | |
| csp (29.3359) | |
| eep (27.3318) | |
| cbl (20.4339) | |
| ese (17.8368) | |
| eru (15.3661) | |
| nlu (14.3761) | |
| nmm (13.1474) | |
| amn (6.26566) | |
| eye (4.43308) | |
| eje (4.24985) | |
| ute (3.98353) | |
| ebs (3.90394) | |
| fty (2.98927) | |
| nep (2.75887) | |
| nco (2.74947) | |
| med (2.6738) | |
| jca (2.62108) | |
| hlv (2.36736) | |
| ece (1.83444) | |
| cly (1.4477) | |
| pty (1.28443) | |
| nms (1.28315) | |
| ecc (1.26539) | |
| lnt (1.13847) | |
| hea (1.02249) | |
| nje (0.99552) | |
| hyp (0.85702) | |
| fce (0.814775) | |
| cov (0.792917) | |
| fat (0.737137) | |
| fbs (0.701385) | |
| spc (0.680195) | |
| fhi (0.678311) | |
| ssp (0.677599) | |
| cag (0.604778) | |
| pgl (0.592417) | |
| che (0.545256) | |
| cje (0.495704) | |
| spl (0.429553) | |
| mas (0.42061) | |
| ova (0.387397) | |
| gul (0.355177) | |
| ton (0.351) | |
| cli (0.305623) | |
| jej (0.296765) | |
| cst (0.280073) | |
| cga (0.279096) | |
| ste (0.270416) | |
| ldo (0.194005) | |
| duo (0.172801) | |
| cut (0.169924) | |
| ski (0.146735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| clu (0.119646) |