Ss1.1-Spl1-SPL01E060077.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CGAGCCGCGAACTTTTGCGGCCCTGAGAGATCCAGGCGGCTGTGGTGCGGCGCAATGGAG GAGCTCGATGGGGAGCCGACAGTCACTTTGATTCCAGGAGTGAATTCCCAGAAGAAGCAA ATGTGTTTTGACTGGGGTCCAGGGGAGATGCTGGTATGTGAAACCTCTTTCAACAAAAAA GAAAAATCAGAGATGGTGCCTGGTTGCCCCTATATCCATATTATCCGGAAAGATATAGAT GTTTATTGTAAAATCCTAAGAAAACTCTTCAACGAGTCCCATGGAATCTTTGTGGGCCTT CAGAGAATTGAAGAAGAGTTTACTGGAAAATCCAGAAAAGCTCAATTGGTTCGAGTGAGT AAAAACTACCGATCAGTCATAAGAGCGTGCATGGAGGAAATGCACCAGCTTGCAATTGCT GCTAAAGATCCAGCCAGTGGCGGCCAGTTTAGCAGCCAGATCTCCATTTTGTCAGCCATG GAGCTCATTTGGAACCTTTGTGAGATTCTTTTTATTGAAGTGGCCCCAGCCGGCCCCCTC CTCCTTCACCTCCTTGACTGGGTCCGATTGCACGTGTGTGAGGTGGACAGTTTGTCGGCA GATGTTCTGGGCAGTGAGAATCCAAGCAAACACCAGGACTTCTGGAAGCTGGTGACCATC CTGGTGCTGCAGGGCCGGCTGGACGAGGCCCGGCAGATGCTCTCCAAGGAAGCCGACGCC AGCCCCACCTCTGCAGGCATGTGCCGCGTCCTGGGGGACCTGATGAGGACAATGCCCGTT CTCAGCCCTGGTAACACTCAGACGTTGACCGAGCTGGAGCTGAAGTGGCAGCACTGGCAC GAGGAGTGCGAGCGGCACCTCCAAGATGGCACATTCGCCTCCAGTCCTCACCTCGAGTCT CTTTGCAAGATCATGCTGGGAGACGAAGCTGCCCTGTTGGAGCAAAAGGAGCTTCTGAGT AACTGGTACCATTTCCTAGTGACCCGGCTCCTGTACTCTTGTCCCACAGTGAAACCCATG GACCTGCACTGCTATGCCCAGTCCAGCCTGGACCTGTTTCTGGGAGGTGAGAGCAGCGCA GAACCCTTGGACAACATCTTGTTGGCAGCCTTCGAGTTCGACATCCACCAAGTGATAAAG GAGTGCAGCATTGCCCTCAGCAACTGGTGGTTTGTGGCCCACCTGACAGACCTGCTGGAT CACTGCAAACTCCTCCAGTCTCACAACCTCTACTTCGGGTCCAACATGAGAGAGTTCCTC CTGCTGGAATATGCCTCAGGCCTGTTTGCCCATCACAGCCTGTGGCAGCTGGGGGTGGAT TACTTTGACCACTGCCCTGAGCTGGGCCGAGTTTCGTTGGAGCTGCATATCGAGCGGATC CCGCTGAGCACGGAGCAGAAAGCCCTCAAGGTGCTGCGGGTTTGCGAGCAGCGGCAGATG ACGGAGCAAGTTCGCAGCATTTGTAAGATCTTAGCCATGAAAGCTGTCCGCAACAATCGC CTGGGCTCCGCCCTCTCTTGGAGCATTCGAGCCAAAGATGCTGCCTTTGCCACGCTGGTG TCAGACAGGTTCCTCAGGGATTACTGTGAGCGAGGCTGCTTTTCCGACCTCGATCTCATT GACAACCTGGGGCCAGCCATGATGCTCAGTGATCGACTGACGTTCCTGGGAAAGTACCGT GAGTTCCACCGGTTATATGGGGAGAAGCGTTTTGTTGACGCTGCTTCTCTTCTCCTGTCA CTGATGACGTCCCAGATTGCCCCCCGGTCTTTCTGGATGACGCTACTAACAGACGCCCTG CCCCTCTTGGAACAGAAACAGGTGATTTTTTCAGCAGAGCAAACGTATGAGTTGATGAGA TGCCTGGAAGACCTGACCTCAGAAAGGCCAGCGCATGGAGAGCCCGATGCCCAGCAACTC CAGGATGATGACATAGAGACCACCAAAGTGGAAATGCTGAGAATTGGTCTTGCACGAAAT CTTGCTCGGTCAATTATAAAAGAAGGCTCGTTGGACGGTTCCTGAGGCCAACTCCAACAT GGTATCTTTGTAAGGCAATGTATATACATTTTTAAAAGAATAAATGTGGTTTTTTTTGCA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CGAGCCGCGAACTTTTGCGGCCCTGAGAGATCCAGGCGGCTGTGGTGCGGCGCAATGGAG GAGCTCGATGGGGAGCCGACAGTCACTTTGATTCCAGGAGTGAATTCCCAGAAGAAGCAA ATGTGTTTTGACTGGGGTCCAGGGGAGATGCTGGTATGTGAAACCTCTTTCAACAAAAAA GAAAAATCAGAGATGGTGCCTGGTTGCCCCTATATCCATATTATCCGGAAAGATATAGAT GTTTATTGTAAAATCCTAAGAAAACTCTTCAACGAGTCCCATGGAATCTTTGTGGGCCTT CAGAGAATTGAAGAAGAGTTTACTGGAAAATCCAGAAAAGCTCAATTGGTTCGAGTGAGT AAAAACTACCGATCAGTCATAAGAGCGTGCATGGAGGAAATGCACCAGCTTGCAATTGCT GCTAAAGATCCAGCCAGTGGCGGCCAGTTTAGCAGCCAGATCTCCATTTTGTCAGCCATG GAGCTCATTTGGAACCTTTGTGAGATTCTTTTTATTGAAGTGGCCCCAGCCGGCCCCCTC CTCCTTCACCTCCTTGACTGGGTCCGATTGCACGTGTGTGAGGTGGACAGTTTGTCGGCA GATGTTCTGGGCAGTGAGAATCCAAGCAAACACCAGGACTTCTGGAAGCTGGTGACCATC CTGGTGCTGCAGGGCCGGCTGGACGAGGCCCGGCAGATGCTCTCCAAGGAAGCCGACGCC AGCCCCACCTCTGCAGGCATGTGCCGCGTCCTGGGGGACCTGATGAGGACAATGCCCGTT CTCAGCCCTGGTAACACTCAGACGTTGACCGAGCTGGAGCTGAAGTGGCAGCACTGGCAC GAGGAGTGCGAGCGGCACCTCCAAGATGGCACATTCGCCTCCAGTCCTCACCTCGAGTCT CTTTGCAAGATCATGCTGGGAGACGAAGCTGCCCTGTTGGAGCAAAAGGAGCTTCTGAGT AACTGGTACCATTTCCTAGTGACCCGGCTCCTGTACTCTTGTCCCACAGTGAAACCCATG GACCTGCACTGCTATGCCCAGTCCAGCCTGGACCTGTTTCTGGGAGGTGAGAGCAGCGCA GAACCCTTGGACAACATCTTGTTGGCAGCCTTCGAGTTCGACATCCACCAAGTGATAAAG GAGTGCAGCATTGCCCTCAGCAACTGGTGGTTTGTGGCCCACCTGACAGACCTGCTGGAT CACTGCAAACTCCTCCAGTCTCACAACCTCTACTTCGGGTCCAACATGAGAGAGTTCCTC CTGCTGGAATATGCCTCAGGCCTGTTTGCCCATCACAGCCTGTGGCAGCTGGGGGTGGAT TACTTTGACCACTGCCCTGAGCTGGGCCGAGTTTCGTTGGAGCTGCATATCGAGCGGATC CCGCTGAGCACGGAGCAGAAAGCCCTCAAGGTGCTGCGGGTTTGCGAGCAGCGGCAGATG ACGGAGCAAGTTCGCAGCATTTGTAAGATCTTAGCCATGAAAGCTGTCCGCAACAATCGC CTGGGCTCCGCCCTCTCTTGGAGCATTCGAGCCAAAGATGCTGCCTTTGCCACGCTGGTG TCAGACAGGTTCCTCAGGGATTACTGTGAGCGAGGCTGCTTTTCCGACCTCGATCTCATT GACAACCTGGGGCCAGCCATGATGCTCAGTGATCGACTGACGTTCCTGGGAAAGTACCGT GAGTTCCACCGGTTATATGGGGAGAAGCGTTTTGTTGACGCTGCTTCTCTTCTCCTGTCA CTGATGACGTCCCAGATTGCCCCCCGGTCTTTCTGGATGACGCTACTAACAGACGCCCTG CCCCTCTTGGAACAGAAACAGGTGATTTTTTCAGCAGAGCAAACGTATGAGTTGATGAGA TGCCTGGAAGACCTGACCTCAGAAAGGCCAGCGCATGGAGAGCCCGATGCCCAGCAACTC CAGGATGATGACATAGAGACCACCAAAGTGGAAATGCTGAGAATTGGTCTTGCACGAAAT CTTGCTCGGTCAATTATAAAAGAAGGCTCGTTGGACGGTTCCTGAGGCCAACTCCAACAT GGTATCTTTGTAAGGCAATGTATATACATTTTTAAAAGAATAAATGTGGTTTTTTTTGCA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
219-351, + strand, RNAz p=0.746407 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
219-351, + strand, RNAz p=0.746407 |
Aligned organism(s): 82 entry(ies) | More info |
Aligned organism(s): 82 entry(ies) | Help | Less info |
180-351, gnl|bosTau2|chr19 (50830127-50829956) | |
180-351, gnl|Hg17|chr17 (70717511-70717682) | |
180-351, gnl|Mm7|chr11 (115675644-115675817) | |
651-786, gnl|bosTau2|chr19 (50821489-50821354) | |
651-786, gnl|canFam2|chr9 (8265000-8264849) | |
651-786, gnl|danRer3|chrNA (3175924-3176067) | |
651-786, gnl|echTel1|scaffold_290540 (44764-44630) | |
651-786, gnl|fr1|chrUn (236108948-236109102) | |
651-786, gnl|galGal2|chr3_random (1381138-1381281) | |
651-786, gnl|hg17|chr17 (70732783-70732934) | |
651-786, gnl|Hg17|chr17 (70732792-70732927) | |
651-786, gnl|loxAfr1|scaffold_2677 (60228-60077) | |
651-786, gnl|mm7|chr11 (115686965-115687116) | |
651-786, gnl|Mm7|chr11 (115686974-115687109) | |
651-786, gnl|monDom2|scaffold_18 (32739302-32739453) | |
651-786, gnl|panTro1|chr19 (74082702-74082853) | |
651-786, gnl|rheMac2|chr16 (70520311-70520462) | |
651-786, gnl|rn3|chr10 (105672649-105672800) | |
651-786, gnl|tetNig1|chr3 (8715398-8715522) | |
651-786, gnl|xenTro1|scaffold_632 (143869-143719) | |
787-922, gnl|bosTau2|chr19 (50821261-50821127) | |
787-922, gnl|Hg17|chr17 (70733032-70733164) | |
787-922, gnl|Mm7|chr11 (115687209-115687343) | |
1032-1148, gnl|bosTau2|chr19 (50820570-50820454) | |
1032-1148, gnl|canFam2|chr9 (8263775-8263625) | |
1032-1148, gnl|danRer3|chrNA (3182071-3182198) | |
1032-1148, gnl|dasNov1|scaffold_2296 (82176-82311) | |
1032-1148, gnl|echTel1|scaffold_309289 (121019-120883) | |
1032-1148, gnl|fr1|chrUn (236109778-236109908) | |
1032-1148, gnl|galGal2|chr3_random (1382716-1382856) | |
1032-1148, gnl|hg17|chr17 (70733718-70733861) | |
1032-1148, gnl|Hg17|chr17 (70733731-70733847) | |
1032-1148, gnl|loxAfr1|scaffold_2677 (59324-59181) | |
1032-1148, gnl|mm7|chr11 (115687816-115687955) | |
1032-1148, gnl|Mm7|chr11 (115687825-115687941) | |
1032-1148, gnl|monDom2|scaffold_18 (32741894-32742039) | |
1032-1148, gnl|oryCun1|scaffold_183169 (27774-27632) | |
1032-1148, gnl|panTro1|chr19 (74083639-74083782) | |
1032-1148, gnl|rheMac2|chr16 (70521554-70521697) | |
1032-1148, gnl|rn3|chr10 (105673510-105673643) | |
1032-1148, gnl|tetNig1|chr3 (8716048-8716162) | |
1032-1148, gnl|xenTro1|scaffold_632 (142536-142401) | |
1289-1450, gnl|bosTau2|chr19 (50816862-50816702) | |
1289-1450, gnl|canFam2|chr9 (8252383-8252195) | |
1289-1450, gnl|danRer3|chrNA (3187732-3187912) | |
1289-1450, gnl|dasNov1|scaffold_2296 (85897-86090) | |
1289-1450, gnl|echTel1|scaffold_309289 (119555-119372) | |
1289-1450, gnl|fr1|chrUn (236110330-236110505) | |
1289-1450, gnl|galGal2|chr3_random (1384233-1384412) | |
1289-1450, gnl|hg17|chr17 (70739492-70739687) | |
1289-1450, gnl|Hg17|chr17 (70739509-70739669) | |
1289-1450, gnl|loxAfr1|scaffold_2677 (56053-55863) | |
1289-1450, gnl|mm7|chr11 (115689945-115690135) | |
1289-1450, gnl|Mm7|chr11 (115689960-115690117) | |
1289-1450, gnl|monDom2|scaffold_18 (32743234-32743433) | |
1289-1450, gnl|oryCun1|scaffold_183169 (23810-23618) | |
1289-1450, gnl|panTro1|chr19 (74089409-74089604) | |
1289-1450, gnl|rheMac2|chr16 (70527758-70527953) | |
1289-1450, gnl|rn3|chr10 (105676664-105676853) | |
1289-1450, gnl|tetNig1|chr3 (8716566-8716749) | |
1289-1450, gnl|xenTro1|scaffold_632 (141279-141086) | |
1669-1823, gnl|bosTau2|chr19 (50813929-50813775) | |
1669-1823, gnl|canFam2|chr9 (8250109-8249938) | |
1669-1823, gnl|danRer3|chrNA (3193016-3193182) | |
1669-1823, gnl|dasNov1|scaffold_2296 (89847-90006) | |
1669-1823, gnl|echTel1|scaffold_233696 (1316-1485) | |
1669-1823, gnl|fr1|chrUn (236111061-236111232) | |
1669-1823, gnl|galGal2|chr3_random (1386667-1386823) | |
1669-1823, gnl|hg17|chr17 (70742310-70742481) | |
1669-1823, gnl|Hg17|chr17 (70742326-70742480) | |
1669-1823, gnl|loxAfr1|scaffold_2677 (53409-53238) | |
1669-1823, gnl|mm7|chr11 (115691905-115692076) | |
1669-1823, gnl|Mm7|chr11 (115691921-115692075) | |
1669-1823, gnl|monDom2|scaffold_18 (32744890-32745049) | |
1669-1823, gnl|panTro1|chr19 (74092207-74092378) | |
1669-1823, gnl|rheMac2|chr16 (70530346-70530517) | |
1669-1823, gnl|rn3|chr10 (105678596-105678767) | |
1669-1823, gnl|tetNig1|chr3 (8717309-8717480) | |
1669-1823, gnl|xenTro1|scaffold_632 (140356-140185) | |
1922-2100, gnl|bosTau2|chr19 (50812995-50812818) | |
1922-2100, gnl|Hg17|chr17 (70743266-70743442) | |
1922-2100, gnl|Mm7|chr11 (115692764-115692944) |
Aligned organism(s): 82 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
180-351, gnl|bosTau2|chr19 (50830127-50829956) | |
180-351, gnl|Hg17|chr17 (70717511-70717682) | |
180-351, gnl|Mm7|chr11 (115675644-115675817) | |
651-786, gnl|bosTau2|chr19 (50821489-50821354) | |
651-786, gnl|canFam2|chr9 (8265000-8264849) | |
651-786, gnl|danRer3|chrNA (3175924-3176067) | |
651-786, gnl|echTel1|scaffold_290540 (44764-44630) | |
651-786, gnl|fr1|chrUn (236108948-236109102) | |
651-786, gnl|galGal2|chr3_random (1381138-1381281) | |
651-786, gnl|hg17|chr17 (70732783-70732934) | |
651-786, gnl|Hg17|chr17 (70732792-70732927) | |
651-786, gnl|loxAfr1|scaffold_2677 (60228-60077) | |
651-786, gnl|mm7|chr11 (115686965-115687116) | |
651-786, gnl|Mm7|chr11 (115686974-115687109) | |
651-786, gnl|monDom2|scaffold_18 (32739302-32739453) | |
651-786, gnl|panTro1|chr19 (74082702-74082853) | |
651-786, gnl|rheMac2|chr16 (70520311-70520462) | |
651-786, gnl|rn3|chr10 (105672649-105672800) | |
651-786, gnl|tetNig1|chr3 (8715398-8715522) | |
651-786, gnl|xenTro1|scaffold_632 (143869-143719) | |
787-922, gnl|bosTau2|chr19 (50821261-50821127) | |
787-922, gnl|Hg17|chr17 (70733032-70733164) | |
787-922, gnl|Mm7|chr11 (115687209-115687343) | |
1032-1148, gnl|bosTau2|chr19 (50820570-50820454) | |
1032-1148, gnl|canFam2|chr9 (8263775-8263625) | |
1032-1148, gnl|danRer3|chrNA (3182071-3182198) | |
1032-1148, gnl|dasNov1|scaffold_2296 (82176-82311) | |
1032-1148, gnl|echTel1|scaffold_309289 (121019-120883) | |
1032-1148, gnl|fr1|chrUn (236109778-236109908) | |
1032-1148, gnl|galGal2|chr3_random (1382716-1382856) | |
1032-1148, gnl|hg17|chr17 (70733718-70733861) | |
1032-1148, gnl|Hg17|chr17 (70733731-70733847) | |
1032-1148, gnl|loxAfr1|scaffold_2677 (59324-59181) | |
1032-1148, gnl|mm7|chr11 (115687816-115687955) | |
1032-1148, gnl|Mm7|chr11 (115687825-115687941) | |
1032-1148, gnl|monDom2|scaffold_18 (32741894-32742039) | |
1032-1148, gnl|oryCun1|scaffold_183169 (27774-27632) | |
1032-1148, gnl|panTro1|chr19 (74083639-74083782) | |
1032-1148, gnl|rheMac2|chr16 (70521554-70521697) | |
1032-1148, gnl|rn3|chr10 (105673510-105673643) | |
1032-1148, gnl|tetNig1|chr3 (8716048-8716162) | |
1032-1148, gnl|xenTro1|scaffold_632 (142536-142401) | |
1289-1450, gnl|bosTau2|chr19 (50816862-50816702) | |
1289-1450, gnl|canFam2|chr9 (8252383-8252195) | |
1289-1450, gnl|danRer3|chrNA (3187732-3187912) | |
1289-1450, gnl|dasNov1|scaffold_2296 (85897-86090) | |
1289-1450, gnl|echTel1|scaffold_309289 (119555-119372) | |
1289-1450, gnl|fr1|chrUn (236110330-236110505) | |
1289-1450, gnl|galGal2|chr3_random (1384233-1384412) | |
1289-1450, gnl|hg17|chr17 (70739492-70739687) | |
1289-1450, gnl|Hg17|chr17 (70739509-70739669) | |
1289-1450, gnl|loxAfr1|scaffold_2677 (56053-55863) | |
1289-1450, gnl|mm7|chr11 (115689945-115690135) | |
1289-1450, gnl|Mm7|chr11 (115689960-115690117) | |
1289-1450, gnl|monDom2|scaffold_18 (32743234-32743433) | |
1289-1450, gnl|oryCun1|scaffold_183169 (23810-23618) | |
1289-1450, gnl|panTro1|chr19 (74089409-74089604) | |
1289-1450, gnl|rheMac2|chr16 (70527758-70527953) | |
1289-1450, gnl|rn3|chr10 (105676664-105676853) | |
1289-1450, gnl|tetNig1|chr3 (8716566-8716749) | |
1289-1450, gnl|xenTro1|scaffold_632 (141279-141086) | |
1669-1823, gnl|bosTau2|chr19 (50813929-50813775) | |
1669-1823, gnl|canFam2|chr9 (8250109-8249938) | |
1669-1823, gnl|danRer3|chrNA (3193016-3193182) | |
1669-1823, gnl|dasNov1|scaffold_2296 (89847-90006) | |
1669-1823, gnl|echTel1|scaffold_233696 (1316-1485) | |
1669-1823, gnl|fr1|chrUn (236111061-236111232) | |
1669-1823, gnl|galGal2|chr3_random (1386667-1386823) | |
1669-1823, gnl|hg17|chr17 (70742310-70742481) | |
1669-1823, gnl|Hg17|chr17 (70742326-70742480) | |
1669-1823, gnl|loxAfr1|scaffold_2677 (53409-53238) | |
1669-1823, gnl|mm7|chr11 (115691905-115692076) | |
1669-1823, gnl|Mm7|chr11 (115691921-115692075) | |
1669-1823, gnl|monDom2|scaffold_18 (32744890-32745049) | |
1669-1823, gnl|panTro1|chr19 (74092207-74092378) | |
1669-1823, gnl|rheMac2|chr16 (70530346-70530517) | |
1669-1823, gnl|rn3|chr10 (105678596-105678767) | |
1669-1823, gnl|tetNig1|chr3 (8717309-8717480) | |
1669-1823, gnl|xenTro1|scaffold_632 (140356-140185) | |
1922-2100, gnl|bosTau2|chr19 (50812995-50812818) | |
1922-2100, gnl|Hg17|chr17 (70743266-70743442) | |
1922-2100, gnl|Mm7|chr11 (115692764-115692944) |
Expressed library(ies): 15 entry(ies) | More info |
Expressed library(ies): 15 entry(ies) | Help | Less info |
bla (0.373042) | |
pgl (0.236967) | |
med (0.232504) | |
ece (0.229305) | |
mcp (0.170648) | |
cut (0.169924) | |
fhi (0.169578) | |
nco (0.161734) | |
tbr (0.154178) | |
cag (0.151194) | |
lin (0.145603) | |
nca (0.136874) | |
thg (0.126791) | |
ebs (0.118301) | |
eje (0.0988338) |
Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
bla (0.373042) | |
pgl (0.236967) | |
med (0.232504) | |
ece (0.229305) | |
mcp (0.170648) | |
cut (0.169924) | |
fhi (0.169578) | |
nco (0.161734) | |
tbr (0.154178) | |
cag (0.151194) | |
lin (0.145603) | |
nca (0.136874) | |
thg (0.126791) | |
ebs (0.118301) | |
eje (0.0988338) |