Non-Coding RNA Search

Ss1.1-Spl1-SPL01E070044.5

Sequence:


               
               CCTGGTCTTCAAGCCTGAGCTCATCTCCCGGCTGGAACAAGGGCAGGAGCCATGGGTCCT
CGACCTGCAAGGAACAGAGGGGAGAGAGGCACCCAGGCCCTCCAGGACAGATTCTATGAT
TGGGAGTAACAGTCAGCAGGCCTGTGAGGATGTGGACATTCTGAAGCCAGATTCCCGGGT
GACTATGGTCAAACTACTCCCCCAGGACTTTCCTCAGAGTCCTTGCTTTGGAGCCACCTC
TGATTTGGAGGTCTGGTCTGAGAGTCAGCCAGGCTTCCTCTTCCAGGGAAACTGTTCAAA
CACAGGGATTTTGGCTCCCAAGGGCAAGGCCAAGGTACGCGGTGAGCAAGGGAGCAGTGG
CCGCCTGGGTTGTCAGCTTGATAAAAGTCAGGGGTGGTCCCGAAGGTGTGATGTGTGTGG
CAAGAGGTTCAGATCTAATTCAGATGTTGCTCTGCATGTGGAAACGAATGCACAGAAGAA
ACCTAACAGATGTCAAGAGTGCCAGAAAAAATTACCTGATTGCTTACAGGGGAGACATCA
AAGTACCTTCCATGCAGAGAAGCCATATGAGTGTGAAGAATGTGGGAAAGTCTTCAGGTT
GTGCTCACAGCTTCATCAGCATCAGAGAATCCACACAGGAGAGAAGCCATTTAAATGCAT
CGAGTGTGGAAAAGCCTTCCGCCTGAGTTCAAAACTTATTCAGCATCAAAGAATTCACAC
AGGAGAGAAGCCCTACAGGTGCGAAGAATGTGGGAAAGCCTTTGGCCAGAGCTCCAGCCT
CATCCACCATCAGAGGGTCCACACAGGGGAGAGGCCCTACCCCTGCCGCGAATGTGGGAA
GGCCTTTAGCCAGCAGTCTCAGCTGGTCAGGCACCAGAGGACTCACACAGGAGAGAGGCC
CTACCCCTGCCTCGAGTGTGGGAAGGCCTTCAGCCAGAGCTCAACCCTAGCTCAGCACCA
GCGGATGCATGCTGGGGAGAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGTCTTCAAGCCTGAGCTCATCTCCCGGCTGGAACAAGGGCAGGAGCCATGGGTCCT
CGACCTGCAAGGAACAGAGGGGAGAGAGGCACCCAGGCCCTCCAGGACAGATTCTATGAT
TGGGAGTAACAGTCAGCAGGCCTGTGAGGATGTGGACATTCTGAAGCCAGATTCCCGGGT
GACTATGGTCAAACTACTCCCCCAGGACTTTCCTCAGAGTCCTTGCTTTGGAGCCACCTC
TGATTTGGAGGTCTGGTCTGAGAGTCAGCCAGGCTTCCTCTTCCAGGGAAACTGTTCAAA
CACAGGGATTTTGGCTCCCAAGGGCAAGGCCAAGGTACGCGGTGAGCAAGGGAGCAGTGG
CCGCCTGGGTTGTCAGCTTGATAAAAGTCAGGGGTGGTCCCGAAGGTGTGATGTGTGTGG
CAAGAGGTTCAGATCTAATTCAGATGTTGCTCTGCATGTGGAAACGAATGCACAGAAGAA
ACCTAACAGATGTCAAGAGTGCCAGAAAAAATTACCTGATTGCTTACAGGGGAGACATCA
AAGTACCTTCCATGCAGAGAAGCCATATGAGTGTGAAGAATGTGGGAAAGTCTTCAGGTT
GTGCTCACAGCTTCATCAGCATCAGAGAATCCACACAGGAGAGAAGCCATTTAAATGCAT
CGAGTGTGGAAAAGCCTTCCGCCTGAGTTCAAAACTTATTCAGCATCAAAGAATTCACAC
AGGAGAGAAGCCCTACAGGTGCGAAGAATGTGGGAAAGCCTTTGGCCAGAGCTCCAGCCT
CATCCACCATCAGAGGGTCCACACAGGGGAGAGGCCCTACCCCTGCCGCGAATGTGGGAA
GGCCTTTAGCCAGCAGTCTCAGCTGGTCAGGCACCAGAGGACTCACACAGGAGAGAGGCC
CTACCCCTGCCTCGAGTGTGGGAAGGCCTTCAGCCAGAGCTCAACCCTAGCTCAGCACCA
GCGGATGCATGCTGGGGAGAAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37590636|gb|AAH58923.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37590636|gb|AAH58923.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-256, - strand, RNAz p=0.979407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-256, - strand, RNAz p=0.979407

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-110, gnl|bosTau2|chr14 (3153580-3153689)
               

               
               1-110, gnl|Hg17|chr8 (146033587-146033696)
               

               
               1-110, gnl|Mm7|chr15 (76969927-76970036)
               


               
               147-984, gnl|bosTau2|chr14 (3154986-3155838)
               

               
               147-984, gnl|Hg17|chr8 (146037571-146038462)
               


               
               406-981, gnl|bosTau2|chr10 (8996832-8996254)
               

               
               406-981, gnl|Hg17|chr19 (42818637-42817975)
               

               
               406-981, gnl|Mm7|chr2 (127310263-127309685)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-110, gnl|bosTau2|chr14 (3153580-3153689)
               

               
               1-110, gnl|Hg17|chr8 (146033587-146033696)
               

               
               1-110, gnl|Mm7|chr15 (76969927-76970036)
               


               
               147-984, gnl|bosTau2|chr14 (3154986-3155838)
               

               
               147-984, gnl|Hg17|chr8 (146037571-146038462)
               


               
               406-981, gnl|bosTau2|chr10 (8996832-8996254)
               

               
               406-981, gnl|Hg17|chr19 (42818637-42817975)
               

               
               406-981, gnl|Mm7|chr2 (127310263-127309685)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-110, gnl\|bosTau2\|chr14 (3153580-3153689)
	1-110, gnl\|Hg17\|chr8 (146033587-146033696)
	1-110, gnl\|Mm7\|chr15 (76969927-76970036)

	147-984, gnl\|bosTau2\|chr14 (3154986-3155838)
	147-984, gnl\|Hg17\|chr8 (146037571-146038462)

	406-981, gnl\|bosTau2\|chr10 (8996832-8996254)
	406-981, gnl\|Hg17\|chr19 (42818637-42817975)
	406-981, gnl\|Mm7\|chr2 (127310263-127309685)