Ss1.1-Spl1-SPL01E070070.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATTCTGGATGAAATTGAAGAACACAGCATTAAAATCTATCACTTACCTGATGCAGAGT CAGATGAAGATGAAGATTTTAAAGAGCAGACCAGGCTTCTCAAGGCCAGCATCCCCTTCT CCGTGGTTGGATCCAATCAGCTGATCGAAGCCAAGGGCAAGAAGGTCCGAGGCCGGCTGT ACCCCTGGGGCGTCGTGGAGGTGGAGAACCCGGAGCACAACGACTTCCTGAAGCTGAGGA CGATGCTCATCACCCACATGCAGGACCTGCAGGAGGTGACCCAGGACCTTCACTACGAAA ACTTCCGGTCCGAGAGGCTCAAAAGAGGCGGCAGGAAAGTGGAAAATGAGGACATGAATA AAGACCAGATCTTGCTGGAAAAGGAAGCTGAGCTCCGCCGCATGCAGGAGATGATCGCAA GGATGCAGGCGCAGATGCAGCTGCAGATGCAGGGCGGGGACAGCGATGGCGGCGTTCACG GGCACCACGTGTAAGGAACCATCTCGCAAGACCCACATTCCGATGAGCGGCACAGCTGCG TGTTCTCACGGCGGCTGGAAGGGTGCCATCCACGGTCTATAGTACCTGTGCCTGAGAAAC TAATTTTTCAGAAACTTTCGAGGTGTTACTTTGTATGAAGTATCTTAACATTTATGTTTC ATTATGTTATACTTTCTTCTTTCTTTCCTCCACCGCAACTAACCACTGACCTTAGCATCG ATTCCCGGGGCCTTCAGCATGTAGAGTAAATCACTGAATTCGACTCGGCTGGCCTCACCA CCCAGCCCCGATTTGTTTCTAGAAGCAGACAGATTTCCCGGACTGTTCTGAGTGGTGCGG AGGGACGGGCTGACCTGGCGCAAGGCTGTCCACTCACCAGGTCGCCACGTGAGCTTGACT TCCTGGCTTCTGTTGGAGCCCAACACCTACAACCAGTTTTGCTGCTTTAACTCAGAACTG ATGATTCACCTGCGTGTTGATCTGTTTACCAAATGAAACAGTTTTCTAATGAGATACATG TTTATACTTAAATAGCTTTTTCTAACGTGGGCTTTTGGGGTGAATTTTTTAACAAGCCTC TGGGTTCCGATGCTAGGTCATTTTTTTAAACCGCTATGCATAGAACTCTCCACCAGCCAC GTTCTGTAGAGTAGGTCACCAATACTAGTTTATTCTGCTCCAGGAAAAAGCCCTGCGTCC ACGAGCAGCAGTTTTCACGGTGCAGCTAAGATTCCGACCTACACGGTGAGAGGCAGTAAG CGGTTTCCACTCAACTAAATTTAAAACATGACTTAAGGAAAATTAACAAGTGATTGTGCA GAAACCACCTTGGTAATACTTTACACTGCAATCTTGAATGTGCTTTGTGTAACGGCGGCG GTTCTAGAGGCCCCGCCTGGGCTGTGGGAATCAGGGTCCTTCGGCGGCAGCCCTGGGGCC TCCGCCCCACGGATCCTGAAACACACCCGGGTTTTCCTCACGGTAACGTTCTAAACAGCG TCCAGGCGGATAGCAGTGATCCTTGCTCTGTGCAGACCGTCTGTCCGCGTGCTGTGTGAG AATGGAGGGTCTTTCAGATGCGCGCCGGGGCTGGCTGGCCGGTGCCCCCAGTCGAGGCTG CCCCCGGATGGGTTTGTGTGCTCTGCGGCCCCGTCCCGGCCCTGTCCTCCCGCCCAGGGG CCAAGGTGCTGATACTTCTGCTGCCTCGGGAGGTGGGGCCCAGAAAGTGACAGCTGGACG CTCTGGGAGGAGGTGGTGCTGGTTCCGTTTTCTTTTCGCCAGAACAGGAGAGAATGTGTA TCACTCCAAGGATGAGGAGGGTGGCTTTTGCCAGAGAGGAAGAAAAGCGGGGTGGTCGGA GCACCTTCGAGTCACAAGGGTGTCCTGCAGAGGCTGCCCTCCTCCAGACCTCCTTCCTGT CGCCTGCCTGCGGGTGGTCGGGAGCCGCAGCTGCAGGCGCACTGGGCAGATTTTACCAGG GAAACGTCTTCCCTGGCCTGAGGGCCCCTGCATGCAAGGCCAGTTGTTTGGGTGGTTTGG GCGTTGATGCCCTACGCTAGTGAACGCTGTTCAGCAGAGGGGCTGGGGCAGCATTTGAAA GTGGTCAGCGTGAGCCCTGTCCTGTCGGACGACTCCCTCCTGCGCACAGCTGCCGCCTAA TGGAGATGCAGGGGTGGGCCTGCCCTGTTAGACTTTCAGATTCCCGTTTGTCTGCTGCCC AAATCTAAGTAAATACTCTTGCTAATAGATAATTGCTCTTTTACTAAGGGATAATCTTTA CCTATGAAAGTGTATTTTGAAAACTTATTTTACACAGCAATTTTGTATCCATTGAAACTA ACCTTTTATCAATAAAGCACTATTGTTTAGATACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATTCTGGATGAAATTGAAGAACACAGCATTAAAATCTATCACTTACCTGATGCAGAGT CAGATGAAGATGAAGATTTTAAAGAGCAGACCAGGCTTCTCAAGGCCAGCATCCCCTTCT CCGTGGTTGGATCCAATCAGCTGATCGAAGCCAAGGGCAAGAAGGTCCGAGGCCGGCTGT ACCCCTGGGGCGTCGTGGAGGTGGAGAACCCGGAGCACAACGACTTCCTGAAGCTGAGGA CGATGCTCATCACCCACATGCAGGACCTGCAGGAGGTGACCCAGGACCTTCACTACGAAA ACTTCCGGTCCGAGAGGCTCAAAAGAGGCGGCAGGAAAGTGGAAAATGAGGACATGAATA AAGACCAGATCTTGCTGGAAAAGGAAGCTGAGCTCCGCCGCATGCAGGAGATGATCGCAA GGATGCAGGCGCAGATGCAGCTGCAGATGCAGGGCGGGGACAGCGATGGCGGCGTTCACG GGCACCACGTGTAAGGAACCATCTCGCAAGACCCACATTCCGATGAGCGGCACAGCTGCG TGTTCTCACGGCGGCTGGAAGGGTGCCATCCACGGTCTATAGTACCTGTGCCTGAGAAAC TAATTTTTCAGAAACTTTCGAGGTGTTACTTTGTATGAAGTATCTTAACATTTATGTTTC ATTATGTTATACTTTCTTCTTTCTTTCCTCCACCGCAACTAACCACTGACCTTAGCATCG ATTCCCGGGGCCTTCAGCATGTAGAGTAAATCACTGAATTCGACTCGGCTGGCCTCACCA CCCAGCCCCGATTTGTTTCTAGAAGCAGACAGATTTCCCGGACTGTTCTGAGTGGTGCGG AGGGACGGGCTGACCTGGCGCAAGGCTGTCCACTCACCAGGTCGCCACGTGAGCTTGACT TCCTGGCTTCTGTTGGAGCCCAACACCTACAACCAGTTTTGCTGCTTTAACTCAGAACTG ATGATTCACCTGCGTGTTGATCTGTTTACCAAATGAAACAGTTTTCTAATGAGATACATG TTTATACTTAAATAGCTTTTTCTAACGTGGGCTTTTGGGGTGAATTTTTTAACAAGCCTC TGGGTTCCGATGCTAGGTCATTTTTTTAAACCGCTATGCATAGAACTCTCCACCAGCCAC GTTCTGTAGAGTAGGTCACCAATACTAGTTTATTCTGCTCCAGGAAAAAGCCCTGCGTCC ACGAGCAGCAGTTTTCACGGTGCAGCTAAGATTCCGACCTACACGGTGAGAGGCAGTAAG CGGTTTCCACTCAACTAAATTTAAAACATGACTTAAGGAAAATTAACAAGTGATTGTGCA GAAACCACCTTGGTAATACTTTACACTGCAATCTTGAATGTGCTTTGTGTAACGGCGGCG GTTCTAGAGGCCCCGCCTGGGCTGTGGGAATCAGGGTCCTTCGGCGGCAGCCCTGGGGCC TCCGCCCCACGGATCCTGAAACACACCCGGGTTTTCCTCACGGTAACGTTCTAAACAGCG TCCAGGCGGATAGCAGTGATCCTTGCTCTGTGCAGACCGTCTGTCCGCGTGCTGTGTGAG AATGGAGGGTCTTTCAGATGCGCGCCGGGGCTGGCTGGCCGGTGCCCCCAGTCGAGGCTG CCCCCGGATGGGTTTGTGTGCTCTGCGGCCCCGTCCCGGCCCTGTCCTCCCGCCCAGGGG CCAAGGTGCTGATACTTCTGCTGCCTCGGGAGGTGGGGCCCAGAAAGTGACAGCTGGACG CTCTGGGAGGAGGTGGTGCTGGTTCCGTTTTCTTTTCGCCAGAACAGGAGAGAATGTGTA TCACTCCAAGGATGAGGAGGGTGGCTTTTGCCAGAGAGGAAGAAAAGCGGGGTGGTCGGA GCACCTTCGAGTCACAAGGGTGTCCTGCAGAGGCTGCCCTCCTCCAGACCTCCTTCCTGT CGCCTGCCTGCGGGTGGTCGGGAGCCGCAGCTGCAGGCGCACTGGGCAGATTTTACCAGG GAAACGTCTTCCCTGGCCTGAGGGCCCCTGCATGCAAGGCCAGTTGTTTGGGTGGTTTGG GCGTTGATGCCCTACGCTAGTGAACGCTGTTCAGCAGAGGGGCTGGGGCAGCATTTGAAA GTGGTCAGCGTGAGCCCTGTCCTGTCGGACGACTCCCTCCTGCGCACAGCTGCCGCCTAA TGGAGATGCAGGGGTGGGCCTGCCCTGTTAGACTTTCAGATTCCCGTTTGTCTGCTGCCC AAATCTAAGTAAATACTCTTGCTAATAGATAATTGCTCTTTTACTAAGGGATAATCTTTA CCTATGAAAGTGTATTTTGAAAACTTATTTTACACAGCAATTTTGTATCCATTGAAACTA ACCTTTTATCAATAAAGCACTATTGTTTAGATACTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-674, gnl|bosTau2|chr29 (1187654-1186979) | |
| 1-674, gnl|Hg17|chr2 (241997194-242011559) | |
| 1-674, gnl|Mm7|chr1 (93407198-93415811) | |
| 675-1109, gnl|bosTau2|chr29 (1186953-1186514) | |
| 675-1109, gnl|Hg17|chr2 (242011580-242012046) | |
| 675-1109, gnl|Mm7|chr1 (93415832-93416289) | |
| 1199-1340, gnl|bosTau2|chr3 (85350997-85351142) | |
| 1199-1340, gnl|canFam2|chr25 (54279112-54278981) | |
| 1199-1340, gnl|canFam2|chr25 (54278767-54279136) | |
| 1199-1340, gnl|dasNov1|scaffold_260903 (1093-1236) | |
| 1199-1340, gnl|dasNov1|scaffold_39348 (376-756) | |
| 1199-1340, gnl|hg17|chr1 (105952493-105952633) | |
| 1199-1340, gnl|hg17|chr2 (242011977-242012357) | |
| 1199-1340, gnl|Hg17|chr2 (242012128-242012290) | |
| 1199-1340, gnl|mm7|chr1 (93416215-93416554) | |
| 1199-1340, gnl|Mm7|chr1 (93416375-93416493) | |
| 1199-1340, gnl|mm7|chr10_random (2719501-2719614) | |
| 1199-1340, gnl|monDom2|scaffold_0 (166666872-166667015) | |
| 1199-1340, gnl|oryCun1|scaffold_127124 (13434-13570) | |
| 1199-1340, gnl|oryCun1|scaffold_127124 (13769-13410) | |
| 1199-1340, gnl|panTro1|chr1 (104953061-104953201) | |
| 1199-1340, gnl|panTro1|chr13 (133486982-133487362) | |
| 1199-1340, gnl|rheMac2|chr12 (105272052-105271922) | |
| 1199-1340, gnl|rheMac2|chr12 (105271662-105272076) | |
| 1199-1340, gnl|rn3|chr15 (49023519-49023401) | |
| 1199-1340, gnl|rn3|chr9 (92992644-92992989) | |
| 1879-2373, gnl|bosTau2|chr29 (1186135-1185648) | |
| 1879-2373, gnl|Hg17|chr2 (242012933-242013427) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-674, gnl|bosTau2|chr29 (1187654-1186979) | |
| 1-674, gnl|Hg17|chr2 (241997194-242011559) | |
| 1-674, gnl|Mm7|chr1 (93407198-93415811) | |
| 675-1109, gnl|bosTau2|chr29 (1186953-1186514) | |
| 675-1109, gnl|Hg17|chr2 (242011580-242012046) | |
| 675-1109, gnl|Mm7|chr1 (93415832-93416289) | |
| 1199-1340, gnl|bosTau2|chr3 (85350997-85351142) | |
| 1199-1340, gnl|canFam2|chr25 (54279112-54278981) | |
| 1199-1340, gnl|canFam2|chr25 (54278767-54279136) | |
| 1199-1340, gnl|dasNov1|scaffold_260903 (1093-1236) | |
| 1199-1340, gnl|dasNov1|scaffold_39348 (376-756) | |
| 1199-1340, gnl|hg17|chr1 (105952493-105952633) | |
| 1199-1340, gnl|hg17|chr2 (242011977-242012357) | |
| 1199-1340, gnl|Hg17|chr2 (242012128-242012290) | |
| 1199-1340, gnl|mm7|chr1 (93416215-93416554) | |
| 1199-1340, gnl|Mm7|chr1 (93416375-93416493) | |
| 1199-1340, gnl|mm7|chr10_random (2719501-2719614) | |
| 1199-1340, gnl|monDom2|scaffold_0 (166666872-166667015) | |
| 1199-1340, gnl|oryCun1|scaffold_127124 (13434-13570) | |
| 1199-1340, gnl|oryCun1|scaffold_127124 (13769-13410) | |
| 1199-1340, gnl|panTro1|chr1 (104953061-104953201) | |
| 1199-1340, gnl|panTro1|chr13 (133486982-133487362) | |
| 1199-1340, gnl|rheMac2|chr12 (105272052-105271922) | |
| 1199-1340, gnl|rheMac2|chr12 (105271662-105272076) | |
| 1199-1340, gnl|rn3|chr15 (49023519-49023401) | |
| 1199-1340, gnl|rn3|chr9 (92992644-92992989) | |
| 1879-2373, gnl|bosTau2|chr29 (1186135-1185648) | |
| 1879-2373, gnl|Hg17|chr2 (242012933-242013427) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| fbs (0.701385) | |
| eye (0.682012) | |
| eep (0.490256) | |
| nep (0.36785) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| fce (0.271592) | |
| eru (0.240096) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.701385) | |
| eye (0.682012) | |
| eep (0.490256) | |
| nep (0.36785) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| fce (0.271592) | |
| eru (0.240096) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) |