Non-Coding RNA Search

Ss1.1-Spl1-SPL01E070096.5

Sequence:


               
               GGGCCCTCCTTGCTGCATCCACTCCGACTCGGTGTCCTCCTGCCTTGGAGAAGAAAAGCA
GACCTGAGGACATCCTGTGACCAGACCAGAAACCTCCCACCTGTCCAGCTCCTTCCCCAG
ATGGACATGGGGTCCAGCTCCTGGCCCCTTCTGGTACTAAACCTACTGCTGCTCCTACTG
GCACTGCCACTTGAAGGCCAGGACAACTTAAGATGCCATGGGATCCCTGGGATACCGGGC
CTGCCTGGGGCCCCCGGGAAGGATGGGCATGATGGACTGCCAGGGCCCAAGGGTGAGCCA
GGAATCCCAGCTATCCCTGGGACACGTGGACCCAAGGGTGAGAAGGGAGATCCCGGCAAA
CCTGGCCTTCCTGGAAAAAACGGTCCCATGGGAACCCCTGGGATTCCAGGGACTCCCGGA
GTCATGGGACCCCGTGGGGAGCCGGGTGAGGAGGGAAGATATAAGCAGAAGCACCAGTCA
GTGTTCTCCGTCACACGGCAGACGGCCCAGTACCCAGCGGCCAACAGCTTGGTCAAGTTC
AACAACGTCATCACCAACCCGCAGGGGGATTATGACATCAACACTGGCAAGTTCACCTGC
AAAGTCCCCGGCCTCTACTACTTTGTCTACTACACATCACACACGGCCAACCTGTGTATG
CTGCTCTACCGCAACGGCTTCAAGGTGATCACCTTCTGTGACCACATGTCTAATAGCAAG
CAGGTCAGCTCGGGCGGTGTGCTGTTGCGGCTGCAGGAGGGCGAGCAGGTGTGGCTGGGA
GTCAACGACTACAATGGCCTGGTGGGCATGGAGGGCTCCGACAGCATCTTCTCCGGCTTC
TTGCTCTTCCCTAACTAGGGCGGGCAGGCCTGCTCCCACCCTGGGGCCACCCCACCTCCC
TCAGCTTTCCCGCAAGAGCCTGCTGTGCCACATCCTTGCTCAGGCCATTCTCGCCACTGG
ATGGACTCCTCCTCCAGGAAGCCCACCCTGCCATCCTACCCCATGAGTTCTCGCCCTCCT
CTGAACTCCTTCAGTAGTCACTGCTTTGATACTTAACCGACACTTTCTGGTACTGTCATT
AGTTTCTTTCCAAGTCTTGGAAGAGGCAGGGAGATTCATAAATAAATCAGTCAACAAATA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCTCCTTGCTGCATCCACTCCGACTCGGTGTCCTCCTGCCTTGGAGAAGAAAAGCA
GACCTGAGGACATCCTGTGACCAGACCAGAAACCTCCCACCTGTCCAGCTCCTTCCCCAG
ATGGACATGGGGTCCAGCTCCTGGCCCCTTCTGGTACTAAACCTACTGCTGCTCCTACTG
GCACTGCCACTTGAAGGCCAGGACAACTTAAGATGCCATGGGATCCCTGGGATACCGGGC
CTGCCTGGGGCCCCCGGGAAGGATGGGCATGATGGACTGCCAGGGCCCAAGGGTGAGCCA
GGAATCCCAGCTATCCCTGGGACACGTGGACCCAAGGGTGAGAAGGGAGATCCCGGCAAA
CCTGGCCTTCCTGGAAAAAACGGTCCCATGGGAACCCCTGGGATTCCAGGGACTCCCGGA
GTCATGGGACCCCGTGGGGAGCCGGGTGAGGAGGGAAGATATAAGCAGAAGCACCAGTCA
GTGTTCTCCGTCACACGGCAGACGGCCCAGTACCCAGCGGCCAACAGCTTGGTCAAGTTC
AACAACGTCATCACCAACCCGCAGGGGGATTATGACATCAACACTGGCAAGTTCACCTGC
AAAGTCCCCGGCCTCTACTACTTTGTCTACTACACATCACACACGGCCAACCTGTGTATG
CTGCTCTACCGCAACGGCTTCAAGGTGATCACCTTCTGTGACCACATGTCTAATAGCAAG
CAGGTCAGCTCGGGCGGTGTGCTGTTGCGGCTGCAGGAGGGCGAGCAGGTGTGGCTGGGA
GTCAACGACTACAATGGCCTGGTGGGCATGGAGGGCTCCGACAGCATCTTCTCCGGCTTC
TTGCTCTTCCCTAACTAGGGCGGGCAGGCCTGCTCCCACCCTGGGGCCACCCCACCTCCC
TCAGCTTTCCCGCAAGAGCCTGCTGTGCCACATCCTTGCTCAGGCCATTCTCGCCACTGG
ATGGACTCCTCCTCCAGGAAGCCCACCCTGCCATCCTACCCCATGAGTTCTCGCCCTCCT
CTGAACTCCTTCAGTAGTCACTGCTTTGATACTTAACCGACACTTTCTGGTACTGTCATT
AGTTTCTTTCCAAGTCTTGGAAGAGGCAGGGAGATTCATAAATAAATCAGTCAACAAATA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q69DK9_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69DK9_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               298-496, - strand, RNAz p=0.999772
               

               
               925-1021, - strand, RNAz p=0.52409

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-496, - strand, RNAz p=0.999772
               

               
               925-1021, - strand, RNAz p=0.52409

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               298-1021, gnl|bosTau2|chr2 (84260420-84259693)
               

               
               298-1021, gnl|Hg17|chr1 (22719022-22719822)
               

               
               298-1021, gnl|Mm7|chr4 (136269040-136268349)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               298-1021, gnl|bosTau2|chr2 (84260420-84259693)
               

               
               298-1021, gnl|Hg17|chr1 (22719022-22719822)
               

               
               298-1021, gnl|Mm7|chr4 (136269040-136268349)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               cly (7.72108)
               

               
               csp (6.93101)
               

               
               cag (3.77986)
               

               
               clu (3.23044)
               

               
               jca (1.7094)
               

               
               lnt (1.7077)
               

               
               cli (1.06968)
               

               
               ill (0.877963)
               

               
               cty (0.832639)
               

               
               duo (0.691204)
               

               
               mcp (0.682594)
               

               
               nlu (0.575043)
               

               
               cga (0.558191)
               

               
               cki (0.495704)
               

               
               nco (0.485201)
               

               
               spl (0.429553)
               

               
               fli (0.405762)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (7.72108)
               

               
               csp (6.93101)
               

               
               cag (3.77986)
               

               
               clu (3.23044)
               

               
               jca (1.7094)
               

               
               lnt (1.7077)
               

               
               cli (1.06968)
               

               
               ill (0.877963)
               

               
               cty (0.832639)
               

               
               duo (0.691204)
               

               
               mcp (0.682594)
               

               
               nlu (0.575043)
               

               
               cga (0.558191)
               

               
               cki (0.495704)
               

               
               nco (0.485201)
               

               
               spl (0.429553)
               

               
               fli (0.405762)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               nca (0.273748)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	298-496, - strand, RNAz p=0.999772
	925-1021, - strand, RNAz p=0.52409

	298-1021, gnl\|bosTau2\|chr2 (84260420-84259693)
	298-1021, gnl\|Hg17\|chr1 (22719022-22719822)
	298-1021, gnl\|Mm7\|chr4 (136269040-136268349)

	cly (7.72108)
	csp (6.93101)
	cag (3.77986)
	clu (3.23044)
	jca (1.7094)
	lnt (1.7077)
	cli (1.06968)
	ill (0.877963)
	cty (0.832639)
	duo (0.691204)
	mcp (0.682594)
	nlu (0.575043)
	cga (0.558191)
	cki (0.495704)
	nco (0.485201)
	spl (0.429553)
	fli (0.405762)
	fhi (0.339155)
	nje (0.33184)
	nca (0.273748)
	cov (0.264306)
	med (0.232504)
	nms (0.213858)
	hea (0.204499)
	nbm (0.198649)
	jej (0.197844)
	eje (0.197668)
	col (0.195008)
	fty (0.17584)
	ton (0.1755)
	cut (0.169924)
	cje (0.165235)
	mga (0.160205)
	hyp (0.142837)
	pty (0.142714)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	eru (0.120048)