Non-Coding RNA Search

Ss1.1-Spl1-SPL01E080059.5

Sequence:


               
               AACTGTGTGGACCGCGCCCGGGGACTACAGCTCAGCTCAGCCGAGCAGATCAGCTCAGCC
AAGCAGATCAAAGCAGAGAAGGGCAAATTCATCGCGAGGGCGTCAGCGGGACCATGGAGA
ACGGATTCACATTCGAAGATTATCAGAACACTGCAAAATGGCTTCTGTCTCACACCAAGC
ACCGACCTCAAGTGGCAGTGATCTGTGGTTCTGGGTTGGGAGGTCTGACTGACAGACTGA
CTGAGACTCAGATCTTTAACTACAGTGAAATACCGAACTTTCCCAGAAGTACAGTGCCAG
GTCATGCTGGTCGACTGGTGTTTGGGATCTTGAATGGAAGAGCCTGTGTGATGATGCAGG
GCAGGTTCCACTTGTATGAAGGCTACCCGCTCTGGAAGGTGACTTTCCCAGTAAGGGTTT
TTCAGCTTCTGGGTGTGGACACCCTGGTGGTCACCAATGCAGCTGGAGGACTGAACCCCA
GGTTCGAGGTTGGAGATATCATGCTGATCCGCGATCACATTAACCTGCCCGGTTTCTGCG
GTGAGAACCCTCTCAGAGGGCCTAATGATGAAAGGTTTGGAGTTCGTTTCCCTGCCATGT
CTGATGCCTATGACCGGGACATGAGACAGAAGGCTCACAGTACCTGGAAAGAAATGGGGG
AGCAGAGGGAGTTACAGGAAGGCACATACGTGATGGTGGCAGGCCCCAGCTTTGAGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGTGTGGACCGCGCCCGGGGACTACAGCTCAGCTCAGCCGAGCAGATCAGCTCAGCC
AAGCAGATCAAAGCAGAGAAGGGCAAATTCATCGCGAGGGCGTCAGCGGGACCATGGAGA
ACGGATTCACATTCGAAGATTATCAGAACACTGCAAAATGGCTTCTGTCTCACACCAAGC
ACCGACCTCAAGTGGCAGTGATCTGTGGTTCTGGGTTGGGAGGTCTGACTGACAGACTGA
CTGAGACTCAGATCTTTAACTACAGTGAAATACCGAACTTTCCCAGAAGTACAGTGCCAG
GTCATGCTGGTCGACTGGTGTTTGGGATCTTGAATGGAAGAGCCTGTGTGATGATGCAGG
GCAGGTTCCACTTGTATGAAGGCTACCCGCTCTGGAAGGTGACTTTCCCAGTAAGGGTTT
TTCAGCTTCTGGGTGTGGACACCCTGGTGGTCACCAATGCAGCTGGAGGACTGAACCCCA
GGTTCGAGGTTGGAGATATCATGCTGATCCGCGATCACATTAACCTGCCCGGTTTCTGCG
GTGAGAACCCTCTCAGAGGGCCTAATGATGAAAGGTTTGGAGTTCGTTTCCCTGCCATGT
CTGATGCCTATGACCGGGACATGAGACAGAAGGCTCACAGTACCTGGAAAGAAATGGGGG
AGCAGAGGGAGTTACAGGAAGGCACATACGTGATGGTGGCAGGCCCCAGCTTTGAGACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828195|ref|XP_609368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828195|ref|XP_609368.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-514, + strand, RNAz p=0.867248

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-514, + strand, RNAz p=0.867248

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK126154, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK126154, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               124-294, gnl|bosTau2|chr10 (16352451-16352281)
               

               
               124-294, gnl|Hg17|chr14 (20010306-20010476)
               

               
               124-294, gnl|Mm7|chr14 (46281748-46281918)
               


               
               396-576, gnl|bosTau2|chr10 (16349775-16349595)
               

               
               396-576, gnl|canFam2|chr15 (20819123-20819309)
               

               
               396-576, gnl|danRer3|chr11 (24257199-24257379)
               

               
               396-576, gnl|dasNov1|scaffold_174611 (2804-2984)
               

               
               396-576, gnl|echTel1|scaffold_322145 (128334-128147)
               

               
               396-576, gnl|fr1|chrUn (129694723-129694903)
               

               
               396-576, gnl|hg17|chr14 (20012771-20012957)
               

               
               396-576, gnl|Hg17|chr14 (20012769-20012949)
               

               
               396-576, gnl|loxAfr1|scaffold_3372 (70952-70765)
               

               
               396-576, gnl|mm7|chr14 (46297286-46297472)
               

               
               396-576, gnl|Mm7|chr14 (46284437-46284617)
               

               
               396-576, gnl|monDom2|scaffold_12 (30369322-30369136)
               

               
               396-576, gnl|oryCun1|scaffold_209961 (51606-51792)
               

               
               396-576, gnl|panTro1|chr15 (18931936-18932122)
               

               
               396-576, gnl|rheMac2|chr7 (83179643-83179829)
               

               
               396-576, gnl|rn3|chr15 (26951647-26951833)
               

               
               396-576, gnl|tetNig1|chrUn_random (21905883-21905707)
               

               
               396-576, gnl|xenTro1|scaffold_339 (927668-927854)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-294, gnl|bosTau2|chr10 (16352451-16352281)
               

               
               124-294, gnl|Hg17|chr14 (20010306-20010476)
               

               
               124-294, gnl|Mm7|chr14 (46281748-46281918)
               


               
               396-576, gnl|bosTau2|chr10 (16349775-16349595)
               

               
               396-576, gnl|canFam2|chr15 (20819123-20819309)
               

               
               396-576, gnl|danRer3|chr11 (24257199-24257379)
               

               
               396-576, gnl|dasNov1|scaffold_174611 (2804-2984)
               

               
               396-576, gnl|echTel1|scaffold_322145 (128334-128147)
               

               
               396-576, gnl|fr1|chrUn (129694723-129694903)
               

               
               396-576, gnl|hg17|chr14 (20012771-20012957)
               

               
               396-576, gnl|Hg17|chr14 (20012769-20012949)
               

               
               396-576, gnl|loxAfr1|scaffold_3372 (70952-70765)
               

               
               396-576, gnl|mm7|chr14 (46297286-46297472)
               

               
               396-576, gnl|Mm7|chr14 (46284437-46284617)
               

               
               396-576, gnl|monDom2|scaffold_12 (30369322-30369136)
               

               
               396-576, gnl|oryCun1|scaffold_209961 (51606-51792)
               

               
               396-576, gnl|panTro1|chr15 (18931936-18932122)
               

               
               396-576, gnl|rheMac2|chr7 (83179643-83179829)
               

               
               396-576, gnl|rn3|chr15 (26951647-26951833)
               

               
               396-576, gnl|tetNig1|chrUn_random (21905883-21905707)
               

               
               396-576, gnl|xenTro1|scaffold_339 (927668-927854)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fty (0.351679)
               

               
               cty (0.31224)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               cty (0.31224)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	124-294, gnl\|bosTau2\|chr10 (16352451-16352281)
	124-294, gnl\|Hg17\|chr14 (20010306-20010476)
	124-294, gnl\|Mm7\|chr14 (46281748-46281918)

	396-576, gnl\|bosTau2\|chr10 (16349775-16349595)
	396-576, gnl\|canFam2\|chr15 (20819123-20819309)
	396-576, gnl\|danRer3\|chr11 (24257199-24257379)
	396-576, gnl\|dasNov1\|scaffold_174611 (2804-2984)
	396-576, gnl\|echTel1\|scaffold_322145 (128334-128147)
	396-576, gnl\|fr1\|chrUn (129694723-129694903)
	396-576, gnl\|hg17\|chr14 (20012771-20012957)
	396-576, gnl\|Hg17\|chr14 (20012769-20012949)
	396-576, gnl\|loxAfr1\|scaffold_3372 (70952-70765)
	396-576, gnl\|mm7\|chr14 (46297286-46297472)
	396-576, gnl\|Mm7\|chr14 (46284437-46284617)
	396-576, gnl\|monDom2\|scaffold_12 (30369322-30369136)
	396-576, gnl\|oryCun1\|scaffold_209961 (51606-51792)
	396-576, gnl\|panTro1\|chr15 (18931936-18932122)
	396-576, gnl\|rheMac2\|chr7 (83179643-83179829)
	396-576, gnl\|rn3\|chr15 (26951647-26951833)
	396-576, gnl\|tetNig1\|chrUn_random (21905883-21905707)
	396-576, gnl\|xenTro1\|scaffold_339 (927668-927854)

	fty (0.351679)
	cty (0.31224)
	nje (0.16592)
	cly (0.120642)
	med (0.116252)
	eje (0.0988338)