Non-Coding RNA Search

Ss1.1-Spl1-SPL01E080068.5

Sequence:


               
               CTTTTGAAGGACATGACAATGTAGATGCAAAATTTGTGGAGGAAGCAGCTCTGAAACACA
CCACAGCGCTTTTAGGCTTATAAAAGAGAAATGCAATTGTATCAGCTTCCAGTATTTTAA
TCTTGCTCATTTCCACTGAGAATCCTTTTGCAGTGTTTTAAACTGGTAACCCAAATCAGA
ATACATTGTTGAGCCATCTGAATTTCAAATCTGGGGAGTTCCTGTCATGGGGCAGTGGAA
GCCAATCTGACTAGGAAGCATGAGGCTGTGGGTTTGATCCCTGGCTTCGCTCAGTGAGTT
AAGAATCTGGCGTTGCCATGAGCTGTGGTGTACGTGGTAGACACGGCTCAGCTCTGGCAT
TGCTATGGCTGTGCTGTGGCTGTGGCTGGCAGCTGTAGCTCTGATTGGACCCCTAGCCTG
GGAGCCTCCATATGCTATGGTTGCAACCCTGAAAAAACAAAACAAACAAAAAACCTGAAT
TTCAGTTTGGTACTTGTTCAGACAGAACTAGACTACTGTGCTTCACCTTGTTTTGAACAG
CAGATGAGCAGTCAAGTGTCGAGGAGTGTCGGCTGGTCCAAGGAGGCAGGCATTGGCGTA
CATGATGCTCTTCGGAGTGGCTTATCTCCCTGGGGCTTTCATAGACCAAAAGCTAGTTTC
TGTTACACTCTGAAATGAAATATGCTTTAAAGATGTAGAAACAGTGCTGAGGAAAACAAA
AATTAGATGTGTCACTGAAAAATAGCATATAACAAGCAGAAAAATTAAATGGTGCATGTA
AACTCTATTTGGAAAGAGGATACTTAAAAAAAAAAACCCTGAATTTGGACTAAGTCAAAT
CTGCTAATTCCAGCATCAAATAATTTGTGACATGTAGCATTTTGTACATACCTAGAATAG
GATTTGTCTCTCTGATGGTTCAGATGGAACTGTATTTAATACTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGAAGGACATGACAATGTAGATGCAAAATTTGTGGAGGAAGCAGCTCTGAAACACA
CCACAGCGCTTTTAGGCTTATAAAAGAGAAATGCAATTGTATCAGCTTCCAGTATTTTAA
TCTTGCTCATTTCCACTGAGAATCCTTTTGCAGTGTTTTAAACTGGTAACCCAAATCAGA
ATACATTGTTGAGCCATCTGAATTTCAAATCTGGGGAGTTCCTGTCATGGGGCAGTGGAA
GCCAATCTGACTAGGAAGCATGAGGCTGTGGGTTTGATCCCTGGCTTCGCTCAGTGAGTT
AAGAATCTGGCGTTGCCATGAGCTGTGGTGTACGTGGTAGACACGGCTCAGCTCTGGCAT
TGCTATGGCTGTGCTGTGGCTGTGGCTGGCAGCTGTAGCTCTGATTGGACCCCTAGCCTG
GGAGCCTCCATATGCTATGGTTGCAACCCTGAAAAAACAAAACAAACAAAAAACCTGAAT
TTCAGTTTGGTACTTGTTCAGACAGAACTAGACTACTGTGCTTCACCTTGTTTTGAACAG
CAGATGAGCAGTCAAGTGTCGAGGAGTGTCGGCTGGTCCAAGGAGGCAGGCATTGGCGTA
CATGATGCTCTTCGGAGTGGCTTATCTCCCTGGGGCTTTCATAGACCAAAAGCTAGTTTC
TGTTACACTCTGAAATGAAATATGCTTTAAAGATGTAGAAACAGTGCTGAGGAAAACAAA
AATTAGATGTGTCACTGAAAAATAGCATATAACAAGCAGAAAAATTAAATGGTGCATGTA
AACTCTATTTGGAAAGAGGATACTTAAAAAAAAAAACCCTGAATTTGGACTAAGTCAAAT
CTGCTAATTCCAGCATCAAATAATTTGTGACATGTAGCATTTTGTACATACCTAGAATAG
GATTTGTCTCTCTGATGGTTCAGATGGAACTGTATTTAATACTGTAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-207, gnl|bosTau2|chr4 (19995585-19995800)
               

               
               1-207, gnl|Hg17|chr7 (76585408-76585189)
               

               
               1-207, gnl|Mm7|chr5 (20328715-20328916)
               


               
               475-948, gnl|bosTau2|chr4 (19995791-19996249)
               

               
               475-948, gnl|Hg17|chr7 (76585198-76584786)
               

               
               475-948, gnl|Mm7|chr5 (20328907-20329306)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-207, gnl|bosTau2|chr4 (19995585-19995800)
               

               
               1-207, gnl|Hg17|chr7 (76585408-76585189)
               

               
               1-207, gnl|Mm7|chr5 (20328715-20328916)
               


               
               475-948, gnl|bosTau2|chr4 (19995791-19996249)
               

               
               475-948, gnl|Hg17|chr7 (76585198-76584786)
               

               
               475-948, gnl|Mm7|chr5 (20328907-20329306)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               cmu (0.372787)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	1-207, gnl\|bosTau2\|chr4 (19995585-19995800)
	1-207, gnl\|Hg17\|chr7 (76585408-76585189)
	1-207, gnl\|Mm7\|chr5 (20328715-20328916)

	475-948, gnl\|bosTau2\|chr4 (19995791-19996249)
	475-948, gnl\|Hg17\|chr7 (76585198-76584786)
	475-948, gnl\|Mm7\|chr5 (20328907-20329306)

	cmu (0.372787)
	mgp (0.230681)
	hea (0.204499)
	cki (0.165235)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	bla (0.124347)
	med (0.116252)
	spc (0.113366)