Non-Coding RNA Search

Ss1.1-Spl1-SPL01E080077.5.5

Sequence:


               
               CACCGCCTGCTAAAAATACCCGGCTGGCCCATTATAAAAGCGCTGCGGGCTCGGCCCACC
GACACTAACTCCCCTTCTCCCAGCCGCAGCCGGACGCGTCCAGCCAGCGCAGCCAGCATG
ACTGAGCGCCGTGTGCCTTTCTCGCTCCTGCGGAGCCCCAGCTGGGACCCTTTCCGCGAC
TGGTACCCGGCCCACAGCCGCCTCTTCGACCAGGCCTTCGGGCTGCCCCGGCTGCCCGAG
GAGTGGTCGCAGTGGCTGAGCCACAGCGGCTGGCCGGGCTACGTGCGCCCGCTGCCCCCG
CCCGCCATCGAGGGCCCCGCCGCAGTGGCCGCGCCCGCCTACAGCCGCCTGCTCAGCAGG
CAGCTCAGCAGCGGCGTCTCGGAGATCCAGCAGACCGCCGACCGCTGGCGCGTCTCCCTG
GACGTCAACCACTTCGCCCCCGAGGAGCTGACGGTCAAGACCAAGGACGGCGTGGTGGAG
ATCACGGGCAAGCACGAGGAGCGGCAGGATGAGCACGGCTTCATTTCCCGGTGTTTCACT
CGAAAATACACGCTGCCCCCCGGTGTGGACCCCACCCAGGTCTCCTCCTCCCTGTCCCCT
GAGGGCACGCTCAGCGTGGAGGCCCCGCTGCCCAAGCCAGCCACCCAGTCGGCAGAGATC
ACCATCCCTGTCACTTTCGAGGCGCGGGCCCAGCTTGGGGGCACAGAAGCTGGAAAGTCG
GAAAAGCCCGGAACCAAGTAAAGGCCTTCGCCCTGCTGCTCACCGCCCCCCGCCCAAACC
CGCACCAGCCATCCCCACCTGCCAACTCTCTGTGCTCTTTTGATACGTCTACCTTCTGTT
TTTCTCGAATAAAGTTCAAAGCAACTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGCCTGCTAAAAATACCCGGCTGGCCCATTATAAAAGCGCTGCGGGCTCGGCCCACC
GACACTAACTCCCCTTCTCCCAGCCGCAGCCGGACGCGTCCAGCCAGCGCAGCCAGCATG
ACTGAGCGCCGTGTGCCTTTCTCGCTCCTGCGGAGCCCCAGCTGGGACCCTTTCCGCGAC
TGGTACCCGGCCCACAGCCGCCTCTTCGACCAGGCCTTCGGGCTGCCCCGGCTGCCCGAG
GAGTGGTCGCAGTGGCTGAGCCACAGCGGCTGGCCGGGCTACGTGCGCCCGCTGCCCCCG
CCCGCCATCGAGGGCCCCGCCGCAGTGGCCGCGCCCGCCTACAGCCGCCTGCTCAGCAGG
CAGCTCAGCAGCGGCGTCTCGGAGATCCAGCAGACCGCCGACCGCTGGCGCGTCTCCCTG
GACGTCAACCACTTCGCCCCCGAGGAGCTGACGGTCAAGACCAAGGACGGCGTGGTGGAG
ATCACGGGCAAGCACGAGGAGCGGCAGGATGAGCACGGCTTCATTTCCCGGTGTTTCACT
CGAAAATACACGCTGCCCCCCGGTGTGGACCCCACCCAGGTCTCCTCCTCCCTGTCCCCT
GAGGGCACGCTCAGCGTGGAGGCCCCGCTGCCCAAGCCAGCCACCCAGTCGGCAGAGATC
ACCATCCCTGTCACTTTCGAGGCGCGGGCCCAGCTTGGGGGCACAGAAGCTGGAAAGTCG
GAAAAGCCCGGAACCAAGTAAAGGCCTTCGCCCTGCTGCTCACCGCCCCCCGCCCAAACC
CGCACCAGCCATCCCCACCTGCCAACTCTCTGTGCTCTTTTGATACGTCTACCTTCTGTT
TTTCTCGAATAAAGTTCAAAGCAACTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5S1U1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5S1U1_PIG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               97-870, gnl|bosTau2|chr25 (31374691-31373921)
               


               
               359-626, gnl|bosTau2|chr15 (8348165-8347900)
               

               
               359-626, gnl|Hg17|chr11 (111289455-111289720)
               

               
               359-626, gnl|Mm7|chr9 (50730235-50729970)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-870, gnl|bosTau2|chr25 (31374691-31373921)
               


               
               359-626, gnl|bosTau2|chr15 (8348165-8347900)
               

               
               359-626, gnl|Hg17|chr11 (111289455-111289720)
               

               
               359-626, gnl|Mm7|chr9 (50730235-50729970)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

Help | Less info


               
               cov (3.17167)
               

               
               mas (2.52366)
               

               
               nep (1.4714)
               

               
               ton (1.404)
               

               
               ece (1.37583)
               

               
               cag (1.20956)
               

               
               cly (1.20642)
               

               
               pla (1.06938)
               

               
               hlv (0.974795)
               

               
               hyp (0.85702)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               csp (0.805932)
               

               
               nlu (0.766724)
               

               
               pty (0.713572)
               

               
               fbs (0.701385)
               

               
               ute (0.663922)
               

               
               eep (0.61282)
               

               
               cli (0.611247)
               

               
               eru (0.60024)
               

               
               eje (0.593003)
               

               
               med (0.465008)
               

               
               lnt (0.426925)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               jej (0.296765)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (3.17167)
               

               
               mas (2.52366)
               

               
               nep (1.4714)
               

               
               ton (1.404)
               

               
               ece (1.37583)
               

               
               cag (1.20956)
               

               
               cly (1.20642)
               

               
               pla (1.06938)
               

               
               hlv (0.974795)
               

               
               hyp (0.85702)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               csp (0.805932)
               

               
               nlu (0.766724)
               

               
               pty (0.713572)
               

               
               fbs (0.701385)
               

               
               ute (0.663922)
               

               
               eep (0.61282)
               

               
               cli (0.611247)
               

               
               eru (0.60024)
               

               
               eje (0.593003)
               

               
               med (0.465008)
               

               
               lnt (0.426925)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ill (0.351185)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               jej (0.296765)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	97-870, gnl\|bosTau2\|chr25 (31374691-31373921)

	359-626, gnl\|bosTau2\|chr15 (8348165-8347900)
	359-626, gnl\|Hg17\|chr11 (111289455-111289720)
	359-626, gnl\|Mm7\|chr9 (50730235-50729970)

	cov (3.17167)
	mas (2.52366)
	nep (1.4714)
	ton (1.404)
	ece (1.37583)
	cag (1.20956)
	cly (1.20642)
	pla (1.06938)
	hlv (0.974795)
	hyp (0.85702)
	nms (0.855432)
	fhi (0.847889)
	csp (0.805932)
	nlu (0.766724)
	pty (0.713572)
	fbs (0.701385)
	ute (0.663922)
	eep (0.61282)
	cli (0.611247)
	eru (0.60024)
	eje (0.593003)
	med (0.465008)
	lnt (0.426925)
	ssp (0.406559)
	col (0.390016)
	elu (0.385356)
	ese (0.379507)
	ill (0.351185)
	jca (0.34188)
	mcp (0.341297)
	jej (0.296765)
	nca (0.273748)
	che (0.272628)
	hea (0.204499)
	nbm (0.198649)
	ldo (0.194005)
	nco (0.161734)
	liv (0.146284)
	nmm (0.132802)
	tra (0.123092)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)