Non-Coding RNA Search

Ss1.1-Spl1-SPL01E080086.5

Sequence:


               
               CTGGTCGGCCTTGTGCTACTGGCCAAAAATAATCACAAAGAACCAGCTGCCCCAAAAGAA
CCAGAGGTGACAAAACAAAAAAAAACAACAAAAACAAAATCCCTCACCAAACCAAACAAA
CCAAAAACCAGTCTTGAGCCAGATCTCAGTGTGCTCACCCTCACTGCTACGACACCAAAT
AAGAACCCCAGCCGGGGGCAGAGAAGCCTCGGCAGGGCGGACCTCACACAAGCCCCTGGC
TGTGGGGCCAAGCCTCCCCGCGCACGCGCGCGGGGCCAGAGAAGGAAAAAGAGAATGTGC
CAGCCTCCCAGCCCCAGCCCCCAGCCCTGGGCCAGCGAGGGCAGGGCACAGCCTGGAGCT
GACAGGGTGGGCCCAGAACCACCCACGAAATATTCTTTTCCAGAAGGTGAAAGAGAAAGG
GCCTGAACAACCTTACACCAAATATTCAGTAGCTTCATCCAAAGGATGTACAGTTTTTAG
CGTTGTGCTCAACAGAATGTGTCCCTATCATGTGTCCCCTCTCCCTTGGCTCTCAGCTCT
CCCCTCCTGGGCAGGGGGTCTCGCTTCAACCTCCTCCCTCCCCGCCAGGGGAGAGTTCAG
GGGAAGGCCTGGGATGACTTTTCACCCTTTGTACCTCCCCCTTTTCCCTTTGAAGGGTGG
GCTAGGCCGTTTTGCCAAGTTCTAGCTCTCACATGACCCCCCTCCCCCCATCCCCTCCTC
TGCTCTGGCATCTTCCCCCATCCCTAGCCCATGGGAAGGTGGAAGTGTCAGGCAAGAGGG
GATGAGGTGAGGGCATTCAAATTGTCTTTTGGTCCATCCTCGTCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTCGGCCTTGTGCTACTGGCCAAAAATAATCACAAAGAACCAGCTGCCCCAAAAGAA
CCAGAGGTGACAAAACAAAAAAAAACAACAAAAACAAAATCCCTCACCAAACCAAACAAA
CCAAAAACCAGTCTTGAGCCAGATCTCAGTGTGCTCACCCTCACTGCTACGACACCAAAT
AAGAACCCCAGCCGGGGGCAGAGAAGCCTCGGCAGGGCGGACCTCACACAAGCCCCTGGC
TGTGGGGCCAAGCCTCCCCGCGCACGCGCGCGGGGCCAGAGAAGGAAAAAGAGAATGTGC
CAGCCTCCCAGCCCCAGCCCCCAGCCCTGGGCCAGCGAGGGCAGGGCACAGCCTGGAGCT
GACAGGGTGGGCCCAGAACCACCCACGAAATATTCTTTTCCAGAAGGTGAAAGAGAAAGG
GCCTGAACAACCTTACACCAAATATTCAGTAGCTTCATCCAAAGGATGTACAGTTTTTAG
CGTTGTGCTCAACAGAATGTGTCCCTATCATGTGTCCCCTCTCCCTTGGCTCTCAGCTCT
CCCCTCCTGGGCAGGGGGTCTCGCTTCAACCTCCTCCCTCCCCGCCAGGGGAGAGTTCAG
GGGAAGGCCTGGGATGACTTTTCACCCTTTGTACCTCCCCCTTTTCCCTTTGAAGGGTGG
GCTAGGCCGTTTTGCCAAGTTCTAGCTCTCACATGACCCCCCTCCCCCCATCCCCTCCTC
TGCTCTGGCATCTTCCCCCATCCCTAGCCCATGGGAAGGTGGAAGTGTCAGGCAAGAGGG
GATGAGGTGAGGGCATTCAAATTGTCTTTTGGTCCATCCTCGTCTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               288-400, - strand, RNAz p=0.862955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-400, - strand, RNAz p=0.862955

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-548, gnl|bosTau2|chr18 (44828174-44827636)
               

               
               23-548, gnl|Hg17|chr19 (47287057-47286479)
               

               
               23-548, gnl|Mm7|chr7 (21881934-21881330)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-548, gnl|bosTau2|chr18 (44828174-44827636)
               

               
               23-548, gnl|Hg17|chr19 (47287057-47286479)
               

               
               23-548, gnl|Mm7|chr7 (21881934-21881330)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	23-548, gnl\|bosTau2\|chr18 (44828174-44827636)
	23-548, gnl\|Hg17\|chr19 (47287057-47286479)
	23-548, gnl\|Mm7\|chr7 (21881934-21881330)