Non-Coding RNA Search

Ss1.1-Spl1-SPL01E080098.5

Sequence:


               
               TCGTGGGCTGTGTCCTTCCCGAGTCTGACAGTGAGTGTGCTGGAGGCCTGGCCAGCTGGG
GACCAGCCAGAGAGGCACCTGGACCTCCGTGGCCCCTCGAGCCCTGGCGCACAGGCCCAG
GGGAGTTGAGACCCCCCACCTTCCCCTGCGGGGCTGGGAGGTGAGGTAGACTGGGCGCTG
CGGAAGCGGCTCAGGGGGAGAGGGACCTGAGCCGGCGCCCCCGGAGGTGTTTCTTCTCAT
CCAAAGGCTCCGCAGAAGTGCTGGCCCTGCCCGTGCCCCCCTGCGCCCCTCGCCCTGTTA
GTGACTCCTGGGCCTCGTTCAGCAGAAGGGTCTGAAATCGCTGTTAGGGCGGCGGGAGGC
GGGGCTGCGCTCCACTCCAGCGAGATGCTTCTTGGCTTTGCTCTCTGTGTGATGTCTGCT
CCCTGCCCACATGCTCTCCGACCGAATCTGGTTTGATCGTCACTGTGACCTAGCGAAGCA
CGCAGGACGAGTATTCGTTCTCGTTGGAGGCGAGGAAAAGTTACCCCGAGGAGGCCCATC
TTGTGCGCACGGTTGGTGCCCACTGCAGGGAAGACCCTCAGGGCGGACGCAGCTCATCCT
CCTGGAGCATCAGTTTGGGGGAGGAAAGCTTTTGGGTTTTGCCCTAAGGTCTTCAAAGAT
TTGCCCCACTTCTGCCTGAGCAAAACCCTCAGGCCTCAAGCTTTAGCCGAGGCTCAGCTG
TGGTAGCCGGCCGGCGGGGCAGGCGCTCTCCCCCGGGAGGGGCCAGGCAGCAGGGCTGGT
CAGGGACAGGCTTGCTGGTTCCCTGGCTGACCTCTTAAAGGTGGGATTAGAAATGCACCC
AGGTTTCTTGATTCCACCACAAGGCTGCCCCCTGCCACACGAGTATCCATTCCCGTTGTG
TTGAAGCAGCCGCTCGTTCCGTGTCCCACGGGGAACTGGTCTCCCCTGAGGAAGGGGAGG
CCATGGCTTCTGTTTATTCAGCTCCCTTGTGTGTACTTTTATTAGGCGATAGACTAGTTA
AGAAAATTGTTTCTATGTACTGTATATTTTGTACCTGTTTACACTTCTAATATTGATATA
ACTGATATTTTGAAAAACAAATGAAGAGGAAACGTCCTGTTAAAATAAAACCTAACCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTGGGCTGTGTCCTTCCCGAGTCTGACAGTGAGTGTGCTGGAGGCCTGGCCAGCTGGG
GACCAGCCAGAGAGGCACCTGGACCTCCGTGGCCCCTCGAGCCCTGGCGCACAGGCCCAG
GGGAGTTGAGACCCCCCACCTTCCCCTGCGGGGCTGGGAGGTGAGGTAGACTGGGCGCTG
CGGAAGCGGCTCAGGGGGAGAGGGACCTGAGCCGGCGCCCCCGGAGGTGTTTCTTCTCAT
CCAAAGGCTCCGCAGAAGTGCTGGCCCTGCCCGTGCCCCCCTGCGCCCCTCGCCCTGTTA
GTGACTCCTGGGCCTCGTTCAGCAGAAGGGTCTGAAATCGCTGTTAGGGCGGCGGGAGGC
GGGGCTGCGCTCCACTCCAGCGAGATGCTTCTTGGCTTTGCTCTCTGTGTGATGTCTGCT
CCCTGCCCACATGCTCTCCGACCGAATCTGGTTTGATCGTCACTGTGACCTAGCGAAGCA
CGCAGGACGAGTATTCGTTCTCGTTGGAGGCGAGGAAAAGTTACCCCGAGGAGGCCCATC
TTGTGCGCACGGTTGGTGCCCACTGCAGGGAAGACCCTCAGGGCGGACGCAGCTCATCCT
CCTGGAGCATCAGTTTGGGGGAGGAAAGCTTTTGGGTTTTGCCCTAAGGTCTTCAAAGAT
TTGCCCCACTTCTGCCTGAGCAAAACCCTCAGGCCTCAAGCTTTAGCCGAGGCTCAGCTG
TGGTAGCCGGCCGGCGGGGCAGGCGCTCTCCCCCGGGAGGGGCCAGGCAGCAGGGCTGGT
CAGGGACAGGCTTGCTGGTTCCCTGGCTGACCTCTTAAAGGTGGGATTAGAAATGCACCC
AGGTTTCTTGATTCCACCACAAGGCTGCCCCCTGCCACACGAGTATCCATTCCCGTTGTG
TTGAAGCAGCCGCTCGTTCCGTGTCCCACGGGGAACTGGTCTCCCCTGAGGAAGGGGAGG
CCATGGCTTCTGTTTATTCAGCTCCCTTGTGTGTACTTTTATTAGGCGATAGACTAGTTA
AGAAAATTGTTTCTATGTACTGTATATTTTGTACCTGTTTACACTTCTAATATTGATATA
ACTGATATTTTGAAAAACAAATGAAGAGGAAACGTCCTGTTAAAATAAAACCTAACCAGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               581-1140, gnl|bosTau2|chr4 (65544962-65544418)
               

               
               581-1140, gnl|Hg17|chr7 (148608065-148607538)
               

               
               581-1140, gnl|Mm7|chr6 (48022850-48022313)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               581-1140, gnl|bosTau2|chr4 (65544962-65544418)
               

               
               581-1140, gnl|Hg17|chr7 (148608065-148607538)
               

               
               581-1140, gnl|Mm7|chr6 (48022850-48022313)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	581-1140, gnl\|bosTau2\|chr4 (65544962-65544418)
	581-1140, gnl\|Hg17\|chr7 (148608065-148607538)
	581-1140, gnl\|Mm7\|chr6 (48022850-48022313)

	nep (0.183925)
	nje (0.16592)
	cag (0.151194)
	ecc (0.115035)
	eje (0.0988338)