Ss1.1-Spl1-SPL01E120062.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTATCGCCCAGGGAGACGCGCCCTGTGAAGTCCCGACCAGGCTCCGCCCGCTAGGGTCT CCTGTGACCCGGACCGCATTGGCGGCCCTGCGGGCGGGATGTTCCGGGGTTTGAGCAGTT GGTTTGGCTTGGAGCAGCCGGCGCCGGGTGGCCGGCAGTCCGAGGGAGATGGGCAGCCTA AGGGAGACGCTCCACCCGAGCAGCGCTCCGAGGCGGTGGCAGAGACAGCGGAGGGGGAAC CTCAGCAAGCCGGGGACCAGGAGCTCCTTCATCAGGCCAAAGGCCTCGGCAACTATCTAT TTAACTTTGCAACTGCTGCTACAAAAAAGATAACTGAATCAGTTGCTGAAACAGCACAAA CAATAAAGAAATCAGTAGAAGAAGGAAAGATAGATGACATCATTGATAAGACAATTATAG GAGATTTTCAGAAGGAACAGAAAAAATTTGTTGAGGAGCAGCATACAAAAAAATCAGAAG CAGCAGTGCCCCCATGGGTTGATAGTAATGATGAAGAAACCATTCAACAACAAGTCTTGG CCCTGTCAGCTGACAAGAGGAACTTCCTTCGTGACCCTCCAGCTGGCGTGCAGTTTAACT TTGACTTTGATCAGATGTATCCCGTTGCCCTGGTCATGCTCCAAGAGGACGAGCTCCTGA GCAGGATGAGATTTGCCCTCGTCCCGAAACTTGTGAAAGAAGAAGTGTTCTGGAGGAACT ACTTTTACCGCGTCTCCCTGATTAAGCAGTCGGCCCAGCTCACGGCCCTGGCAGCCCAGC AGCAGGCCGCCGGCAAGGAGGAGAAGAGCCGCGGCAGAGAGGATGAGTCGCCGCTGACAG AGGCAGTACGGCCCAAAACACCACCTGTCGTAATCAAATCTCAGCTTAAAACCCAAGAGG ATGAAGAGGAGATTTCTACCAGCCCGGGTGTTTCTGAGTTTGTCAGTGACGCCTTCGATG CCTGTAACTTAGATCAGGAGGATCTGAGGAAGGAAATGGAGCAGCTGGTGCTGGACAAAA AAGAGCAGGAGACGGTCGTGCTAGAAGAGGATTCTGCAGATTGGGAAAAAGAACTACAAC AGGAACTTCAGGAGTACGAGGTGGTGACAGAATCGGAGAAACGAGATGAAAACTGGGATA AGGAAATAGAGAAAATGCTGCAGGAGGAAAACTAGCTGTCTCCTGAAATAAAGGAAAAAT CCTTAATGCTCTGTAACTGACATTAAATTCTAGGTGTCGACCTTGGCTGAATCAGAAGGC ACAAGAGTATAATAACTTCATGAAATTATTCTTTTTTCAAGCTGAAACTTGCCTCTTTAA AAAATAGGACAGTTATTCTAATAATCAAAAAGATGTTTTATGGAACATTTCTTTGCTATA AATCTCGTTAAAGATGTTCTCGTAGTAGCTGCACACATCGTCACAGAAACACAAGTAAAA TTTTAGAGATAAGTTTTCTGTGAGGTAAAAAAAAGATTCTTCACTTGTGGTTTTCTAAAC ATTTGTACTTGTTGCATTTTCGTTGCTACATATCTGTTAAAGTACTTACTTAATGGATTG ATAACTATCAAAACGACCAAATTGTACCAAAGAATTGAAGAGGAAGCACTTTCAGAACTA TTTTCTTGCAAGTATTTTCTAAAACTCCATCTGGAAGCCAAAAGATAGAATAATTACACT GATTATAATGATAAAAACATCACACCACAGTTTGACCTTGAGAAATACTGTGCAAGAATA TTTGTTTTTCTTTGGGGCCTTTTTTTTTTTTTAACTATACCACATATTTAATAATGTTTT CCTAAATTTCACATCATGGTTTTCGTGGAAAGCAGGATCTTTCATCCTTTTTTGTATTAA TGACTGTCAGACGCCTGTTCCCCTTCAAGTCTCGTGTTTAAATTGTCACCACATATAAAT GTTTTTGCTTTTTTTTTGTCTTAATTAAACTGTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTATCGCCCAGGGAGACGCGCCCTGTGAAGTCCCGACCAGGCTCCGCCCGCTAGGGTCT CCTGTGACCCGGACCGCATTGGCGGCCCTGCGGGCGGGATGTTCCGGGGTTTGAGCAGTT GGTTTGGCTTGGAGCAGCCGGCGCCGGGTGGCCGGCAGTCCGAGGGAGATGGGCAGCCTA AGGGAGACGCTCCACCCGAGCAGCGCTCCGAGGCGGTGGCAGAGACAGCGGAGGGGGAAC CTCAGCAAGCCGGGGACCAGGAGCTCCTTCATCAGGCCAAAGGCCTCGGCAACTATCTAT TTAACTTTGCAACTGCTGCTACAAAAAAGATAACTGAATCAGTTGCTGAAACAGCACAAA CAATAAAGAAATCAGTAGAAGAAGGAAAGATAGATGACATCATTGATAAGACAATTATAG GAGATTTTCAGAAGGAACAGAAAAAATTTGTTGAGGAGCAGCATACAAAAAAATCAGAAG CAGCAGTGCCCCCATGGGTTGATAGTAATGATGAAGAAACCATTCAACAACAAGTCTTGG CCCTGTCAGCTGACAAGAGGAACTTCCTTCGTGACCCTCCAGCTGGCGTGCAGTTTAACT TTGACTTTGATCAGATGTATCCCGTTGCCCTGGTCATGCTCCAAGAGGACGAGCTCCTGA GCAGGATGAGATTTGCCCTCGTCCCGAAACTTGTGAAAGAAGAAGTGTTCTGGAGGAACT ACTTTTACCGCGTCTCCCTGATTAAGCAGTCGGCCCAGCTCACGGCCCTGGCAGCCCAGC AGCAGGCCGCCGGCAAGGAGGAGAAGAGCCGCGGCAGAGAGGATGAGTCGCCGCTGACAG AGGCAGTACGGCCCAAAACACCACCTGTCGTAATCAAATCTCAGCTTAAAACCCAAGAGG ATGAAGAGGAGATTTCTACCAGCCCGGGTGTTTCTGAGTTTGTCAGTGACGCCTTCGATG CCTGTAACTTAGATCAGGAGGATCTGAGGAAGGAAATGGAGCAGCTGGTGCTGGACAAAA AAGAGCAGGAGACGGTCGTGCTAGAAGAGGATTCTGCAGATTGGGAAAAAGAACTACAAC AGGAACTTCAGGAGTACGAGGTGGTGACAGAATCGGAGAAACGAGATGAAAACTGGGATA AGGAAATAGAGAAAATGCTGCAGGAGGAAAACTAGCTGTCTCCTGAAATAAAGGAAAAAT CCTTAATGCTCTGTAACTGACATTAAATTCTAGGTGTCGACCTTGGCTGAATCAGAAGGC ACAAGAGTATAATAACTTCATGAAATTATTCTTTTTTCAAGCTGAAACTTGCCTCTTTAA AAAATAGGACAGTTATTCTAATAATCAAAAAGATGTTTTATGGAACATTTCTTTGCTATA AATCTCGTTAAAGATGTTCTCGTAGTAGCTGCACACATCGTCACAGAAACACAAGTAAAA TTTTAGAGATAAGTTTTCTGTGAGGTAAAAAAAAGATTCTTCACTTGTGGTTTTCTAAAC ATTTGTACTTGTTGCATTTTCGTTGCTACATATCTGTTAAAGTACTTACTTAATGGATTG ATAACTATCAAAACGACCAAATTGTACCAAAGAATTGAAGAGGAAGCACTTTCAGAACTA TTTTCTTGCAAGTATTTTCTAAAACTCCATCTGGAAGCCAAAAGATAGAATAATTACACT GATTATAATGATAAAAACATCACACCACAGTTTGACCTTGAGAAATACTGTGCAAGAATA TTTGTTTTTCTTTGGGGCCTTTTTTTTTTTTTAACTATACCACATATTTAATAATGTTTT CCTAAATTTCACATCATGGTTTTCGTGGAAAGCAGGATCTTTCATCCTTTTTTGTATTAA TGACTGTCAGACGCCTGTTCCCCTTCAAGTCTCGTGTTTAAATTGTCACCACATATAAAT GTTTTTGCTTTTTTTTTGTCTTAATTAAACTGTCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 292-410, gnl|bosTau2|chrX (40372312-40372428) | |
| 292-410, gnl|Hg17|chrX (16513007-16513125) | |
| 292-410, gnl|Mm7|chrX (157657448-157657330) | |
| 552-691, gnl|bosTau2|chrX (40376433-40376572) | |
| 552-691, gnl|canFam2|chrX (12843484-12843650) | |
| 552-691, gnl|danRer3|chr15 (3859684-3859839) | |
| 552-691, gnl|dasNov1|scaffold_25848 (42681-42847) | |
| 552-691, gnl|echTel1|scaffold_283283 (8589-8422) | |
| 552-691, gnl|fr1|chrUn (233420939-233421097) | |
| 552-691, gnl|galGal2|chr1 (114757584-114757427) | |
| 552-691, gnl|hg17|chrX (16521471-16521637) | |
| 552-691, gnl|Hg17|chrX (16521481-16521620) | |
| 552-691, gnl|loxAfr1|scaffold_8387 (70733-70900) | |
| 552-691, gnl|mm7|chrX (157647028-157646862) | |
| 552-691, gnl|Mm7|chrX (157647016-157646877) | |
| 552-691, gnl|monDom2|scaffold_25 (22951334-22951167) | |
| 552-691, gnl|oryCun1|scaffold_111589 (2053-2217) | |
| 552-691, gnl|panTro1|chrX (17002554-17002720) | |
| 552-691, gnl|rn3|chrX (52615099-52615265) | |
| 552-691, gnl|tetNig1|chrUn_random (15641019-15640864) | |
| 552-691, gnl|xenTro1|scaffold_38 (20604-20763) | |
| 692-840, gnl|bosTau2|chrX (40378828-40378976) | |
| 692-840, gnl|canFam2|chrX (12852049-12852196) | |
| 692-840, gnl|danRer3|chr15 (3861112-3861239) | |
| 692-840, gnl|dasNov1|scaffold_66003 (2563-2686) | |
| 692-840, gnl|echTel1|scaffold_283283 (4643-4499) | |
| 692-840, gnl|fr1|chrUn (233421204-233421312) | |
| 692-840, gnl|galGal2|chr1 (114755967-114755823) | |
| 692-840, gnl|hg17|chrX (16532718-16532861) | |
| 692-840, gnl|Hg17|chrX (16532725-16532873) | |
| 692-840, gnl|loxAfr1|scaffold_1840 (344-487) | |
| 692-840, gnl|mm7|chrX (157637580-157637436) | |
| 692-840, gnl|Mm7|chrX (157637570-157637422) | |
| 692-840, gnl|monDom2|scaffold_25 (22946814-22946670) | |
| 692-840, gnl|oryCun1|scaffold_111589 (10278-10424) | |
| 692-840, gnl|panTro1|chrX (17013802-17013945) | |
| 692-840, gnl|rn3|chrX (52623920-52624063) | |
| 692-840, gnl|tetNig1|chrUn_random (15640759-15640658) | |
| 692-840, gnl|xenTro1|scaffold_38 (24128-24274) | |
| 1046-1956, gnl|bosTau2|chrX (40382250-40383202) | |
| 1046-1956, gnl|Hg17|chrX (16538010-16539224) | |
| 1046-1956, gnl|Mm7|chrX (157632372-157631417) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 292-410, gnl|bosTau2|chrX (40372312-40372428) | |
| 292-410, gnl|Hg17|chrX (16513007-16513125) | |
| 292-410, gnl|Mm7|chrX (157657448-157657330) | |
| 552-691, gnl|bosTau2|chrX (40376433-40376572) | |
| 552-691, gnl|canFam2|chrX (12843484-12843650) | |
| 552-691, gnl|danRer3|chr15 (3859684-3859839) | |
| 552-691, gnl|dasNov1|scaffold_25848 (42681-42847) | |
| 552-691, gnl|echTel1|scaffold_283283 (8589-8422) | |
| 552-691, gnl|fr1|chrUn (233420939-233421097) | |
| 552-691, gnl|galGal2|chr1 (114757584-114757427) | |
| 552-691, gnl|hg17|chrX (16521471-16521637) | |
| 552-691, gnl|Hg17|chrX (16521481-16521620) | |
| 552-691, gnl|loxAfr1|scaffold_8387 (70733-70900) | |
| 552-691, gnl|mm7|chrX (157647028-157646862) | |
| 552-691, gnl|Mm7|chrX (157647016-157646877) | |
| 552-691, gnl|monDom2|scaffold_25 (22951334-22951167) | |
| 552-691, gnl|oryCun1|scaffold_111589 (2053-2217) | |
| 552-691, gnl|panTro1|chrX (17002554-17002720) | |
| 552-691, gnl|rn3|chrX (52615099-52615265) | |
| 552-691, gnl|tetNig1|chrUn_random (15641019-15640864) | |
| 552-691, gnl|xenTro1|scaffold_38 (20604-20763) | |
| 692-840, gnl|bosTau2|chrX (40378828-40378976) | |
| 692-840, gnl|canFam2|chrX (12852049-12852196) | |
| 692-840, gnl|danRer3|chr15 (3861112-3861239) | |
| 692-840, gnl|dasNov1|scaffold_66003 (2563-2686) | |
| 692-840, gnl|echTel1|scaffold_283283 (4643-4499) | |
| 692-840, gnl|fr1|chrUn (233421204-233421312) | |
| 692-840, gnl|galGal2|chr1 (114755967-114755823) | |
| 692-840, gnl|hg17|chrX (16532718-16532861) | |
| 692-840, gnl|Hg17|chrX (16532725-16532873) | |
| 692-840, gnl|loxAfr1|scaffold_1840 (344-487) | |
| 692-840, gnl|mm7|chrX (157637580-157637436) | |
| 692-840, gnl|Mm7|chrX (157637570-157637422) | |
| 692-840, gnl|monDom2|scaffold_25 (22946814-22946670) | |
| 692-840, gnl|oryCun1|scaffold_111589 (10278-10424) | |
| 692-840, gnl|panTro1|chrX (17013802-17013945) | |
| 692-840, gnl|rn3|chrX (52623920-52624063) | |
| 692-840, gnl|tetNig1|chrUn_random (15640759-15640658) | |
| 692-840, gnl|xenTro1|scaffold_38 (24128-24274) | |
| 1046-1956, gnl|bosTau2|chrX (40382250-40383202) | |
| 1046-1956, gnl|Hg17|chrX (16538010-16539224) | |
| 1046-1956, gnl|Mm7|chrX (157632372-157631417) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| liv (1.02399) | |
| sug (0.509165) | |
| cbl (0.45919) | |
| bfe (0.449573) | |
| aor (0.390549) | |
| ret (0.3862) | |
| cty (0.31224) | |
| sme (0.305437) | |
| cte (0.29274) | |
| spl (0.286369) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| sag (0.182715) | |
| sin (0.174948) | |
| cut (0.169924) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (1.02399) | |
| sug (0.509165) | |
| cbl (0.45919) | |
| bfe (0.449573) | |
| aor (0.390549) | |
| ret (0.3862) | |
| cty (0.31224) | |
| sme (0.305437) | |
| cte (0.29274) | |
| spl (0.286369) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| sag (0.182715) | |
| sin (0.174948) | |
| cut (0.169924) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| csk (0.140746) | |
| nca (0.136874) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |