Non-Coding RNA Search

Ss1.1-Spl1-SPL01E120082.5

Sequence:


               
               CGCAATTGCACATGGCCGCCTCCTGGGACGATGCCCCTCGTGGTGTTTTGCGGACTGCCG
TACACCGGCAAGAGCCGGCGCGCGGAAGAGCTCCGCCGCGCCCTGGCGGCCGAGGGCCGC
GCGGTATACGTGGTGGACGAAGCGGCGGTGCTGGGCGCGGAGGACGCGACAGTGTACGGC
GATTCGGCCCGTGAGAAGGCCTTGCGTGGGGCCCTGCGAGCTGCCGTGGAGCGGCGCTTG
AGTCGCCACGACGTGGTCATTATCGACTCGCTTAACTACATCAAGGGCTTCCGCTACGAG
CTGTATTGCCTGGCTCGGGCGGCGCGCACCACGCTGTGCGTGGTCTACTGCGTGCGGCCA
GGTGGTTTGGGCAGAGGACCGCGGGTGGCCGGCGTAGAGGAGAATCGGAGCCTGAACGTC
AGTGTGAGTTGGAGACCGCGCGCTGAGGAGGGAGGGAGACCTCTGCCGGCGGACACCAGT
GTTCTCGGGGAACCGCAGGCAGTGGACTCCGTAGTCAACGGGAGACGCCAGACAGATGTA
CTTAAGGAACCAGAGCAGAAGGAAATCGGGGCGTCAGATTTTCTAGCTGTCTTGAATACG
GAATCCGAGAAACCTGCAAAGCATGTGTCCGGTGTTTTTTACCCTCCCGAACTTCTGGAG
GCTCTGGCGCTGCGCTTCGAAGCTCCCGACTCTCGGAACCGCTGGGACCGGCCCCTGTTC
ACTTTGGTGGGCTTAGAGGAGCCGTTGCCCTTGGCAGAGATCAGGGCTGCCCTCTTTGAG
AACCGGGCTCCTCCACCCCATCAGTCTACACAGTCCCAGCCACTTGCCTCTGGCAGCTTT
TTGCACCAGTTGGACCAGGTCACTAGCCAGGTGTTGGCAGGACTGATGGAAGCACAGAAG
AGCGCAGTCCCCGGAGACTTGCTTAAGCTTCCTGGCACCACAGAGCACCTCCGGTTTACC
CGGCCCTTGACCATGGCAGAACTGAGTCGCCTCCGTCGCCAGTTTATTTCCTACACCAAA
ATGCATCCCAACAATGAGAACCTGCCTCAACTAGCCAACATGTTTCTGCAGTATCTGAGC
CAGAGCTTGCACTAACCAGGACTGGTGGGGAAAAACCACGGTTCCTTGTCTCACCTCTAC
ACCTTGGGAAGAGTAATCTAAAGTTCTGCAGATTTTGTTAATGTCTGGTACTTGTGCTGT
TGGGGCTAATTCACTCATACTTTCCTGAATGCCTGTGCCAGATCTTGAGCATAATTTGAG
ACTAGAGAAAATGAAGAAATGGAGCTTGGAGGATCTTCGCAAATTTCTCCGGAGGGACAG
CTCAGGTGGATAGGGCTTGCTTAGGTTAGGATCACACACTATTGATTTTCATCTGAACTG
TGGGAGGAGAGACTGGGTAGATGAATTGTTTTAAAACAATTCTGAACAGCACTGAAGATG
GCACAATTCAGTGTCTAAACTGGGCCTTCTTTCATACCACAGTTTTTAAAATACTTTGCC
TACTTTTTCTAGTCTTTGTCCTGGGACCTGGGCTCACAGATCTCATCCACTAGTTTCTGG
CTTTGGGAAGTTTTGGTTCTAGTGTAAGTGAAAGACAAAACCACTAGATTATTTCATCTA
ATAAAATCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAATTGCACATGGCCGCCTCCTGGGACGATGCCCCTCGTGGTGTTTTGCGGACTGCCG
TACACCGGCAAGAGCCGGCGCGCGGAAGAGCTCCGCCGCGCCCTGGCGGCCGAGGGCCGC
GCGGTATACGTGGTGGACGAAGCGGCGGTGCTGGGCGCGGAGGACGCGACAGTGTACGGC
GATTCGGCCCGTGAGAAGGCCTTGCGTGGGGCCCTGCGAGCTGCCGTGGAGCGGCGCTTG
AGTCGCCACGACGTGGTCATTATCGACTCGCTTAACTACATCAAGGGCTTCCGCTACGAG
CTGTATTGCCTGGCTCGGGCGGCGCGCACCACGCTGTGCGTGGTCTACTGCGTGCGGCCA
GGTGGTTTGGGCAGAGGACCGCGGGTGGCCGGCGTAGAGGAGAATCGGAGCCTGAACGTC
AGTGTGAGTTGGAGACCGCGCGCTGAGGAGGGAGGGAGACCTCTGCCGGCGGACACCAGT
GTTCTCGGGGAACCGCAGGCAGTGGACTCCGTAGTCAACGGGAGACGCCAGACAGATGTA
CTTAAGGAACCAGAGCAGAAGGAAATCGGGGCGTCAGATTTTCTAGCTGTCTTGAATACG
GAATCCGAGAAACCTGCAAAGCATGTGTCCGGTGTTTTTTACCCTCCCGAACTTCTGGAG
GCTCTGGCGCTGCGCTTCGAAGCTCCCGACTCTCGGAACCGCTGGGACCGGCCCCTGTTC
ACTTTGGTGGGCTTAGAGGAGCCGTTGCCCTTGGCAGAGATCAGGGCTGCCCTCTTTGAG
AACCGGGCTCCTCCACCCCATCAGTCTACACAGTCCCAGCCACTTGCCTCTGGCAGCTTT
TTGCACCAGTTGGACCAGGTCACTAGCCAGGTGTTGGCAGGACTGATGGAAGCACAGAAG
AGCGCAGTCCCCGGAGACTTGCTTAAGCTTCCTGGCACCACAGAGCACCTCCGGTTTACC
CGGCCCTTGACCATGGCAGAACTGAGTCGCCTCCGTCGCCAGTTTATTTCCTACACCAAA
ATGCATCCCAACAATGAGAACCTGCCTCAACTAGCCAACATGTTTCTGCAGTATCTGAGC
CAGAGCTTGCACTAACCAGGACTGGTGGGGAAAAACCACGGTTCCTTGTCTCACCTCTAC
ACCTTGGGAAGAGTAATCTAAAGTTCTGCAGATTTTGTTAATGTCTGGTACTTGTGCTGT
TGGGGCTAATTCACTCATACTTTCCTGAATGCCTGTGCCAGATCTTGAGCATAATTTGAG
ACTAGAGAAAATGAAGAAATGGAGCTTGGAGGATCTTCGCAAATTTCTCCGGAGGGACAG
CTCAGGTGGATAGGGCTTGCTTAGGTTAGGATCACACACTATTGATTTTCATCTGAACTG
TGGGAGGAGAGACTGGGTAGATGAATTGTTTTAAAACAATTCTGAACAGCACTGAAGATG
GCACAATTCAGTGTCTAAACTGGGCCTTCTTTCATACCACAGTTTTTAAAATACTTTGCC
TACTTTTTCTAGTCTTTGTCCTGGGACCTGGGCTCACAGATCTCATCCACTAGTTTCTGG
CTTTGGGAAGTTTTGGTTCTAGTGTAAGTGAAAGACAAAACCACTAGATTATTTCATCTA
ATAAAATCTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874580|ref|XP_583527.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874580|ref|XP_583527.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.619337
               

               
               360-479, + strand, RNAz p=0.541396

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.619337
               

               
               360-479, + strand, RNAz p=0.541396

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_138417, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138417, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1632, gnl|bosTau2|chr3 (63786277-63787926)
               

               
               1-1632, gnl|Hg17|chr1 (52211484-52209807)
               

               
               1-1632, gnl|Mm7|chr4 (108224300-108225844)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1632, gnl|bosTau2|chr3 (63786277-63787926)
               

               
               1-1632, gnl|Hg17|chr1 (52211484-52209807)
               

               
               1-1632, gnl|Mm7|chr4 (108224300-108225844)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pla (0.401016)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	40-159, - strand, RNAz p=0.619337
	360-479, + strand, RNAz p=0.541396

	1-1632, gnl\|bosTau2\|chr3 (63786277-63787926)
	1-1632, gnl\|Hg17\|chr1 (52211484-52209807)
	1-1632, gnl\|Mm7\|chr4 (108224300-108225844)

	pla (0.401016)
	mcp (0.170648)
	fhi (0.169578)
	cli (0.152812)
	cty (0.10408)
	eje (0.0988338)