Ss1.1-Spl1-SPL01F010087.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCTCTGTAAAGGAACTTCACTTGGAGCTCGTCTCCGGGAGCCTATTGCTTTCACCTTA AGAAAGCAAGATGCATTTTAGAAACTTTAACTACAGTTTTAGCTCCCTGATTGCCTGTGT GGCAAACAGTGATGTCTTCAGCGAAAGTGAAACCAGGGCCAAATTTGAATCCCTCTTTAG GACATATGACAAAGATATCACCTTTCAGTATTTTAAGAGCTTCAAAAGAGTCAGAATCAA CTTCAGCAACCCCTTGTCTGCAGCAGATGCGAGACTCCAACTACATAAGACTGAATTTCT TGGAAAGGAAATGAAATTATATTTTGCTCAGACTTTACACATAGGAAGTTCCCACCTGGC CCCACCCAATCCAGACAAGCAATTTCTGATCTCACCTCCTGCCTCGCCGCCAGTCGGTTG GAAACAAGTGGAAGACGCTACTCCCGTCATAAATTATGATCTTTTATATGCTATCTCCAA GCTGGGGCCAGGCGAAAAATATGAATTGCACGCCGCAACCGACACCACTCCCAGCGTGGT GGTCCACGTGTGTGAGAGCGATCAGGAGAACGAGGACGAGGACGAGATGGAAAGAATGAA GAGACCCAAACCCAAAATTATCCAGACGAGGAGGCCAGAGTATACGCCCATCCACTTAAG CTGAACTGGGACCCGGACGAAGAAGCGTTCCAAATCCAACACCCGAGAAGGAATCTTTGA CTGTGGAAGTGGCCGGTCACAACCTTGGAGGCGGCAGCCGTGAGCGCTGTGGCAGAAATT CCAGTTCATGTTGCTCAGAAGAGAATCGAGGCTTTGTCTTCCGGTTCCAACGCTGCGCAT CCGTCCCTGTTCGTGGCTCCCGGGAATGTCCTGAGCCAATCACTGAGTTTAGGGTTGATC CGCAAGGACATCTGGGAATGTCTCGAGAAAACCAATAACGATAGTGTTTTGTACTTGTTC TTTTCTGGTAGGTTCTGTTTTCGCCAGGGGCAGGTTGATCAAAGGGTCCAGGGAGAGACT TGTAGAATTTCTAACCAGCCTACAGGATTGACCCTCTCTCTCCTGGGAGGAAAAGGCACC GTGGGGAAGCCACAAGGCATCTGGTGCAAGAAAGGTTGTGAAAACAACAAGGCAGTGTGG AAATTGTAGTGTTTCTTTTTTTTTCCCCCCTCCATGTTCTAATGTTTGTGCATGTATATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCTCTGTAAAGGAACTTCACTTGGAGCTCGTCTCCGGGAGCCTATTGCTTTCACCTTA AGAAAGCAAGATGCATTTTAGAAACTTTAACTACAGTTTTAGCTCCCTGATTGCCTGTGT GGCAAACAGTGATGTCTTCAGCGAAAGTGAAACCAGGGCCAAATTTGAATCCCTCTTTAG GACATATGACAAAGATATCACCTTTCAGTATTTTAAGAGCTTCAAAAGAGTCAGAATCAA CTTCAGCAACCCCTTGTCTGCAGCAGATGCGAGACTCCAACTACATAAGACTGAATTTCT TGGAAAGGAAATGAAATTATATTTTGCTCAGACTTTACACATAGGAAGTTCCCACCTGGC CCCACCCAATCCAGACAAGCAATTTCTGATCTCACCTCCTGCCTCGCCGCCAGTCGGTTG GAAACAAGTGGAAGACGCTACTCCCGTCATAAATTATGATCTTTTATATGCTATCTCCAA GCTGGGGCCAGGCGAAAAATATGAATTGCACGCCGCAACCGACACCACTCCCAGCGTGGT GGTCCACGTGTGTGAGAGCGATCAGGAGAACGAGGACGAGGACGAGATGGAAAGAATGAA GAGACCCAAACCCAAAATTATCCAGACGAGGAGGCCAGAGTATACGCCCATCCACTTAAG CTGAACTGGGACCCGGACGAAGAAGCGTTCCAAATCCAACACCCGAGAAGGAATCTTTGA CTGTGGAAGTGGCCGGTCACAACCTTGGAGGCGGCAGCCGTGAGCGCTGTGGCAGAAATT CCAGTTCATGTTGCTCAGAAGAGAATCGAGGCTTTGTCTTCCGGTTCCAACGCTGCGCAT CCGTCCCTGTTCGTGGCTCCCGGGAATGTCCTGAGCCAATCACTGAGTTTAGGGTTGATC CGCAAGGACATCTGGGAATGTCTCGAGAAAACCAATAACGATAGTGTTTTGTACTTGTTC TTTTCTGGTAGGTTCTGTTTTCGCCAGGGGCAGGTTGATCAAAGGGTCCAGGGAGAGACT TGTAGAATTTCTAACCAGCCTACAGGATTGACCCTCTCTCTCCTGGGAGGAAAAGGCACC GTGGGGAAGCCACAAGGCATCTGGTGCAAGAAAGGTTGTGAAAACAACAAGGCAGTGTGG AAATTGTAGTGTTTCTTTTTTTTTCCCCCCTCCATGTTCTAATGTTTGTGCATGTATATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 157-331, gnl|bosTau2|chr14 (27648565-27648391) | |
| 157-331, gnl|canFam2|chr31 (32034287-32034491) | |
| 157-331, gnl|danRer3|chr9 (32840180-32839994) | |
| 157-331, gnl|dasNov1|scaffold_103096 (1959-1755) | |
| 157-331, gnl|echTel1|scaffold_324599 (19822-20024) | |
| 157-331, gnl|fr1|chrUn (55293041-55293245) | |
| 157-331, gnl|galGal2|chr1 (99641399-99641585) | |
| 157-331, gnl|hg17|chr21 (34817682-34817886) | |
| 157-331, gnl|Hg17|chr21 (34817879-34817705) | |
| 157-331, gnl|loxAfr1|scaffold_5407 (6765-6561) | |
| 157-331, gnl|mm7|chr16 (92449859-92450062) | |
| 157-331, gnl|Mm7|chr16 (92450055-92449881) | |
| 157-331, gnl|monDom2|scaffold_29 (13014324-13014135) | |
| 157-331, gnl|oryCun1|scaffold_177485 (51811-51610) | |
| 157-331, gnl|panTro1|chr22 (34810620-34810824) | |
| 157-331, gnl|rheMac2|chr3 (12044349-12044145) | |
| 157-331, gnl|rn3|chr11 (32448678-32448879) | |
| 157-331, gnl|tetNig1|chr10 (6880775-6880962) | |
| 157-331, gnl|xenTro1|scaffold_1078 (87560-87363) | |
| 488-1200, gnl|bosTau2|chr14 (27642503-27641799) | |
| 488-1200, gnl|canFam2|chr31 (32027344-32028083) | |
| 488-1200, gnl|dasNov1|scaffold_3056 (105451-106169) | |
| 488-1200, gnl|echTel1|scaffold_324599 (12984-13685) | |
| 488-1200, gnl|galGal2|chr1 (99636546-99637202) | |
| 488-1200, gnl|hg17|chr21 (34811428-34812161) | |
| 488-1200, gnl|Hg17|chr21 (34812428-34811733) | |
| 488-1200, gnl|loxAfr1|scaffold_5407 (12394-11679) | |
| 488-1200, gnl|mm7|chr16 (92445283-92445980) | |
| 488-1200, gnl|Mm7|chr16 (92446250-92445558) | |
| 488-1200, gnl|monDom2|scaffold_29 (13022747-13022047) | |
| 488-1200, gnl|oryCun1|scaffold_177485 (56233-55553) | |
| 488-1200, gnl|panTro1|chr22 (34804383-34805116) | |
| 488-1200, gnl|rheMac2|chr3 (12050688-12049955) | |
| 488-1200, gnl|rn3|chr11 (32443504-32444199) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-331, gnl|bosTau2|chr14 (27648565-27648391) | |
| 157-331, gnl|canFam2|chr31 (32034287-32034491) | |
| 157-331, gnl|danRer3|chr9 (32840180-32839994) | |
| 157-331, gnl|dasNov1|scaffold_103096 (1959-1755) | |
| 157-331, gnl|echTel1|scaffold_324599 (19822-20024) | |
| 157-331, gnl|fr1|chrUn (55293041-55293245) | |
| 157-331, gnl|galGal2|chr1 (99641399-99641585) | |
| 157-331, gnl|hg17|chr21 (34817682-34817886) | |
| 157-331, gnl|Hg17|chr21 (34817879-34817705) | |
| 157-331, gnl|loxAfr1|scaffold_5407 (6765-6561) | |
| 157-331, gnl|mm7|chr16 (92449859-92450062) | |
| 157-331, gnl|Mm7|chr16 (92450055-92449881) | |
| 157-331, gnl|monDom2|scaffold_29 (13014324-13014135) | |
| 157-331, gnl|oryCun1|scaffold_177485 (51811-51610) | |
| 157-331, gnl|panTro1|chr22 (34810620-34810824) | |
| 157-331, gnl|rheMac2|chr3 (12044349-12044145) | |
| 157-331, gnl|rn3|chr11 (32448678-32448879) | |
| 157-331, gnl|tetNig1|chr10 (6880775-6880962) | |
| 157-331, gnl|xenTro1|scaffold_1078 (87560-87363) | |
| 488-1200, gnl|bosTau2|chr14 (27642503-27641799) | |
| 488-1200, gnl|canFam2|chr31 (32027344-32028083) | |
| 488-1200, gnl|dasNov1|scaffold_3056 (105451-106169) | |
| 488-1200, gnl|echTel1|scaffold_324599 (12984-13685) | |
| 488-1200, gnl|galGal2|chr1 (99636546-99637202) | |
| 488-1200, gnl|hg17|chr21 (34811428-34812161) | |
| 488-1200, gnl|Hg17|chr21 (34812428-34811733) | |
| 488-1200, gnl|loxAfr1|scaffold_5407 (12394-11679) | |
| 488-1200, gnl|mm7|chr16 (92445283-92445980) | |
| 488-1200, gnl|Mm7|chr16 (92446250-92445558) | |
| 488-1200, gnl|monDom2|scaffold_29 (13022747-13022047) | |
| 488-1200, gnl|oryCun1|scaffold_177485 (56233-55553) | |
| 488-1200, gnl|panTro1|chr22 (34804383-34805116) | |
| 488-1200, gnl|rheMac2|chr3 (12050688-12049955) | |
| 488-1200, gnl|rn3|chr11 (32443504-32444199) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cut (0.169924) | |
| ste (0.135208) | |
| ese (0.126502) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| ste (0.135208) | |
| ese (0.126502) | |
| clu (0.119646) |