Non-Coding RNA Search

Ss1.1-Spl1-SPL01F020082.5

Sequence:


               
               AGCGGCAGAACATTGCAGAGCGGCTGCTGCGGGTCATGTGCGCCGACCTGGGCGCACTGA
GTGTGGTGAGCGGGAAGGAGTTCCTGAAGCTGGCCCAGACGCTGGTGGACAGCGGCGCCC
GCTACGGGGCCTTCTCGGTCACCGAGATCCTGGGCAATTTCAATACACTGGCCCTGAAGC
ACCTGCCACGCATGTACAACCAGGTGAAGGTGAAGGTGACGTGCGCCTTGGGCAGCAACG
CCTGCCTGGGCATCGGCGTCACCTGCCACTCGCAGAGCGTCGGCCCCGACTCCTGCTACA
TCCTCACGGCCTACCAGGCCGAGGGCAACCACATCAAGAGCTACGTGCTGGGCGTGAAGG
GCGCGGACATTCGTGACAGCGGCGACCTGGTGCACCACTGGGTGCAGAACGTGCTGTCGG
AGTTCGTGATGTCAGAGATCAGGACAGTGTACGTGACGGACTGCCGGGTGAGCGCGTCCG
CCTTCTCCAAGGCCGGCATGTGCCTTCGCTGCTCAGCCTGTGCCTTGAACTCGGTGGTGC
AGAGCGTGCTGAGCAAGCGGACGCTGCAGGCCCGCAGCATGCACGAGGTCATCGAGCTGC
TCAACGTGTGTGAGGACCTGGCCGGCTCCACCGGCCTGGCCAAGGAGACCTTCGGCTCCC
TGGAGGAGACCTCGCCGCCGCCCTGCTGGAACTCGGTCACGGACTCGCTGCTGCTGGTGC
ACGAGCGCTATGAGCAGATCTGCGAGTTCTACAGCCGGGCCAAGAAGATGAACCTCATCC
AGAGCCTCAACAAGCACCTGCTCAGCAACCTGGCCGCCATCCTGACGCCTGTGAAGCAGG
CGGTCATCGAGCTGAGCAACGAGAGCCAGCCCACCCTGCAGCTCGTGCTGCCCACCTACG
TCAGGCTGGAGAAGCTGTTCACGGCCAAGGCCAACGACGCGGGCACCGTCAGCAAGCTGT
GCCACCTCTTCCTGGAGGCGCTCAAGGAGAACTTCAAGGTGCATCCAGCGCACAAGGTGG
CCATGATCCTGGACCCACAGCAGAAGCTGCGGCCCGTGCCACCCTACCAGCACGAGGAGA
TCATTGGCAAGGTGTGCGAGCTCATCAACGAGGTCAAAGAGTCCTGGACCGAGGAGGCGG
ACTTCGAGCCCGCCGCCAAGAAGCCCCGCTCGGCCCCCGGCGACAACCCCGCCGCTCAGG
ACGATGACCGGCTGGGGAAGAACGAGGTGTACGATTACCTGCAGGAGCCCCTCTTCCAGG
CCACCCCGGATCTCTTCCAGTACTGGTCGTGCGTGACCCAAAAGCACACGAAACTCGCCA
AGCTCGCCTTCTGGCTCCTTGCGGTGCCAGCCGTGGGGGCCCGGAGCGGGTGTGTAAATA
TGTGTGAACAAGCACTTCTCATCAAAAGGAGGCGACTGCTCAGTCCAGAAGACATGAACA
AACTCATGTTTCTGAAATCCAACATGCTTTAAGACTTCCAGACGGGGAAATTAAAAAAAA
AAAAAAAAAAAAAGAGAGAGAAAGGCCAAGGAAAAAAAATAAAAATAAAGAGAGAAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGCAGAACATTGCAGAGCGGCTGCTGCGGGTCATGTGCGCCGACCTGGGCGCACTGA
GTGTGGTGAGCGGGAAGGAGTTCCTGAAGCTGGCCCAGACGCTGGTGGACAGCGGCGCCC
GCTACGGGGCCTTCTCGGTCACCGAGATCCTGGGCAATTTCAATACACTGGCCCTGAAGC
ACCTGCCACGCATGTACAACCAGGTGAAGGTGAAGGTGACGTGCGCCTTGGGCAGCAACG
CCTGCCTGGGCATCGGCGTCACCTGCCACTCGCAGAGCGTCGGCCCCGACTCCTGCTACA
TCCTCACGGCCTACCAGGCCGAGGGCAACCACATCAAGAGCTACGTGCTGGGCGTGAAGG
GCGCGGACATTCGTGACAGCGGCGACCTGGTGCACCACTGGGTGCAGAACGTGCTGTCGG
AGTTCGTGATGTCAGAGATCAGGACAGTGTACGTGACGGACTGCCGGGTGAGCGCGTCCG
CCTTCTCCAAGGCCGGCATGTGCCTTCGCTGCTCAGCCTGTGCCTTGAACTCGGTGGTGC
AGAGCGTGCTGAGCAAGCGGACGCTGCAGGCCCGCAGCATGCACGAGGTCATCGAGCTGC
TCAACGTGTGTGAGGACCTGGCCGGCTCCACCGGCCTGGCCAAGGAGACCTTCGGCTCCC
TGGAGGAGACCTCGCCGCCGCCCTGCTGGAACTCGGTCACGGACTCGCTGCTGCTGGTGC
ACGAGCGCTATGAGCAGATCTGCGAGTTCTACAGCCGGGCCAAGAAGATGAACCTCATCC
AGAGCCTCAACAAGCACCTGCTCAGCAACCTGGCCGCCATCCTGACGCCTGTGAAGCAGG
CGGTCATCGAGCTGAGCAACGAGAGCCAGCCCACCCTGCAGCTCGTGCTGCCCACCTACG
TCAGGCTGGAGAAGCTGTTCACGGCCAAGGCCAACGACGCGGGCACCGTCAGCAAGCTGT
GCCACCTCTTCCTGGAGGCGCTCAAGGAGAACTTCAAGGTGCATCCAGCGCACAAGGTGG
CCATGATCCTGGACCCACAGCAGAAGCTGCGGCCCGTGCCACCCTACCAGCACGAGGAGA
TCATTGGCAAGGTGTGCGAGCTCATCAACGAGGTCAAAGAGTCCTGGACCGAGGAGGCGG
ACTTCGAGCCCGCCGCCAAGAAGCCCCGCTCGGCCCCCGGCGACAACCCCGCCGCTCAGG
ACGATGACCGGCTGGGGAAGAACGAGGTGTACGATTACCTGCAGGAGCCCCTCTTCCAGG
CCACCCCGGATCTCTTCCAGTACTGGTCGTGCGTGACCCAAAAGCACACGAAACTCGCCA
AGCTCGCCTTCTGGCTCCTTGCGGTGCCAGCCGTGGGGGCCCGGAGCGGGTGTGTAAATA
TGTGTGAACAAGCACTTCTCATCAAAAGGAGGCGACTGCTCAGTCCAGAAGACATGAACA
AACTCATGTTTCTGAAATCCAACATGCTTTAAGACTTCCAGACGGGGAAATTAAAAAAAA
AAAAAAAAAAAAAGAGAGAGAAAGGCCAAGGAAAAAAAATAAAAATAAAGAGAGAAGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15277824|gb|AAH12922.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15277824|gb|AAH12922.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-319, - strand, RNAz p=0.771934
               

               
               1240-1518, + strand, RNAz p=0.795797

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-319, - strand, RNAz p=0.771934
               

               
               1240-1518, + strand, RNAz p=0.795797

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1538, gnl|bosTau2|chr8 (58213805-58215346)
               

               
               1-1538, gnl|Hg17|chr9 (113890530-113892054)
               

               
               1-1538, gnl|Mm7|chr4 (62566070-62567599)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1538, gnl|bosTau2|chr8 (58213805-58215346)
               

               
               1-1538, gnl|Hg17|chr9 (113890530-113892054)
               

               
               1-1538, gnl|Mm7|chr4 (62566070-62567599)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               cty (0.10408)

	160-319, - strand, RNAz p=0.771934
	1240-1518, + strand, RNAz p=0.795797

	1-1538, gnl\|bosTau2\|chr8 (58213805-58215346)
	1-1538, gnl\|Hg17\|chr9 (113890530-113892054)
	1-1538, gnl\|Mm7\|chr4 (62566070-62567599)