Ss1.1-Spl1-SPL01F020096.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CCCGCGCTGCAGGAAGGAGCTGCGGGCTCCAGCCCCTCTGGTCGAGCGCGCCGCTCGGCA CCATGCCCCGCATAGATGCGGACCTCAAGCTGGACTTCAAGGATGTCCTTCTCCGACCCA AGCGAAGCAGCCTCAAGAGCCGAGCCGAGGTGGATCTCGAGCGAACCTTCACATTTCGAA ACTCGAAGCAGACCTACTCAGGGATTCCCATCATTGTGGCCAACATGGACACCGTGGGGA CATTTGAGATGGCGGTGGTGATGTCACAGCACTCCATGTTTACAGCAATTCACAAGCATT ACACCCTGGATGACTGGAAGCTCTTTGCCGCTAATCACCCAGAATGCCTGCAGCATGTTG CCGTGAGTTCCGGCAGTGGGAAGAATGATCTGGAAAAGATGAGCAGCATCCTGGAAGCTG TGCCGCAGGTTAAGTTTATTTGCCTGGATGTGGCCAATGGGTACTCGGAGCATTTTGTGG AATTCGTGAAGCTTGTCCGTGCCAAATTTCCAGAACACACCATCATGGCAGGGAATGTGG TGACGGGAGAGATGGTGGAAGAGCTTATTCTTTCTGGAGCAGATATAATCAAAGTGGGAG TCGGACCAGGTTCCGTGTGTACCACCCGCACCAAGACCGGGGTGGGCTACCCCCAGCTGA GCGCCGTGATCGAGTGCGCGGACTCGGCCCATGGCCTGAAGGGGCACATTATCTCCGACG GAGGCTGTACGTGTCCAGGAGATGTCGCCAAAGCCTTTGGAGCCGGAGCCGATTTTGTCA TGCTGGGAGGGATGTTTTCAGGCCACACGGAGTGCGCCGGAGAGGTGATCGAGAGGAACG GGCAGAAGCTCAAGCTCTTCTACGGGATGAGCTCAGAGACCGCGATGAAGAAACACTCAG GAGGGGTCGCCGAGTACAGAGCCTCCGAGGGCAAGACCGTGGAAGTACCTTACAAAGGGG ACGTGGAGAACACGATTCTGGATATTCTCGGGGGACTGAGGTCTACCTGCACCTACGTAG GGGCCGCCAAACTCAAAGAGCTCAGCCGGAGGGCGACCTTCATCCGGGTGACCCAGCAGC ACAACACCGTGTTCAGCTAACCTCGGGCACAAGGCGGCCTCGGGCGGGTGGGAGCGTCCC CGTCCACGCCTGCTTTCCCACCTCCCTCCTCCGGTGCCGGCAGAGGTTCCCGCTCATCCT CATGGCTGAAGGCCACCCCCTTCGCTCCTGTCACCTGGAGCCTGCGGGGCTCCCCTGGGT CCAGGGGCCCAGAAGCAGGGCCCTCACTGGATCTGCGGTCAGAGCTCAGCTGCCCGGGAT CCCAAACCTCATTGTTAAAACTAACACTTGGCGCCGTTTTCTTTTTTCTTTCTTTTTCTT TTTCTTTCTTTCTTTTTTTTTTTTTAAAGAAAACAGTTTCACTTGAATATAATGCTATTA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CCCGCGCTGCAGGAAGGAGCTGCGGGCTCCAGCCCCTCTGGTCGAGCGCGCCGCTCGGCA CCATGCCCCGCATAGATGCGGACCTCAAGCTGGACTTCAAGGATGTCCTTCTCCGACCCA AGCGAAGCAGCCTCAAGAGCCGAGCCGAGGTGGATCTCGAGCGAACCTTCACATTTCGAA ACTCGAAGCAGACCTACTCAGGGATTCCCATCATTGTGGCCAACATGGACACCGTGGGGA CATTTGAGATGGCGGTGGTGATGTCACAGCACTCCATGTTTACAGCAATTCACAAGCATT ACACCCTGGATGACTGGAAGCTCTTTGCCGCTAATCACCCAGAATGCCTGCAGCATGTTG CCGTGAGTTCCGGCAGTGGGAAGAATGATCTGGAAAAGATGAGCAGCATCCTGGAAGCTG TGCCGCAGGTTAAGTTTATTTGCCTGGATGTGGCCAATGGGTACTCGGAGCATTTTGTGG AATTCGTGAAGCTTGTCCGTGCCAAATTTCCAGAACACACCATCATGGCAGGGAATGTGG TGACGGGAGAGATGGTGGAAGAGCTTATTCTTTCTGGAGCAGATATAATCAAAGTGGGAG TCGGACCAGGTTCCGTGTGTACCACCCGCACCAAGACCGGGGTGGGCTACCCCCAGCTGA GCGCCGTGATCGAGTGCGCGGACTCGGCCCATGGCCTGAAGGGGCACATTATCTCCGACG GAGGCTGTACGTGTCCAGGAGATGTCGCCAAAGCCTTTGGAGCCGGAGCCGATTTTGTCA TGCTGGGAGGGATGTTTTCAGGCCACACGGAGTGCGCCGGAGAGGTGATCGAGAGGAACG GGCAGAAGCTCAAGCTCTTCTACGGGATGAGCTCAGAGACCGCGATGAAGAAACACTCAG GAGGGGTCGCCGAGTACAGAGCCTCCGAGGGCAAGACCGTGGAAGTACCTTACAAAGGGG ACGTGGAGAACACGATTCTGGATATTCTCGGGGGACTGAGGTCTACCTGCACCTACGTAG GGGCCGCCAAACTCAAAGAGCTCAGCCGGAGGGCGACCTTCATCCGGGTGACCCAGCAGC ACAACACCGTGTTCAGCTAACCTCGGGCACAAGGCGGCCTCGGGCGGGTGGGAGCGTCCC CGTCCACGCCTGCTTTCCCACCTCCCTCCTCCGGTGCCGGCAGAGGTTCCCGCTCATCCT CATGGCTGAAGGCCACCCCCTTCGCTCCTGTCACCTGGAGCCTGCGGGGCTCCCCTGGGT CCAGGGGCCCAGAAGCAGGGCCCTCACTGGATCTGCGGTCAGAGCTCAGCTGCCCGGGAT CCCAAACCTCATTGTTAAAACTAACACTTGGCGCCGTTTTCTTTTTTCTTTCTTTTTCTT TTTCTTTCTTTCTTTTTTTTTTTTTAAAGAAAACAGTTTCACTTGAATATAATGCTATTA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
351-449, + strand, RNAz p=0.869513 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
351-449, + strand, RNAz p=0.869513 |
Aligned organism(s): 45 entry(ies) | More info |
Aligned organism(s): 45 entry(ies) | Help | Less info |
7-153, gnl|bosTau2|chr23 (35984448-35984302) | |
7-153, gnl|Hg17|chr6 (16346848-16346995) | |
7-153, gnl|Mm7|chr13 (44958100-44958221) | |
351-528, gnl|bosTau2|chr10 (12263391-12263214) | |
351-528, gnl|canFam2|chr8 (7223485-7223683) | |
351-528, gnl|danRer3|chr7 (11546884-11547067) | |
351-528, gnl|dasNov1|scaffold_243328 (715-521) | |
351-528, gnl|echTel1|scaffold_316077 (99676-99873) | |
351-528, gnl|fr1|chrUn (223164196-223164000) | |
351-528, gnl|hg17|chr14 (23775002-23775200) | |
351-528, gnl|Hg17|chr14 (23775010-23775187) | |
351-528, gnl|loxAfr1|scaffold_5042 (6406-6599) | |
351-528, gnl|mm7|chr14 (50542898-50543099) | |
351-528, gnl|Mm7|chr14 (50542908-50543085) | |
351-528, gnl|monDom2|scaffold_12 (25537020-25536821) | |
351-528, gnl|oryCun1|scaffold_178102 (115666-115865) | |
351-528, gnl|panTro1|chr15 (22677045-22677243) | |
351-528, gnl|rheMac2|chr7 (87129815-87130013) | |
351-528, gnl|rn3|chr15 (33840523-33840725) | |
351-528, gnl|tetNig1|chrUn_random (21385869-21385677) | |
351-528, gnl|xenTro1|scaffold_53 (610688-610877) | |
606-715, gnl|bosTau2|chr23 (35947931-35947822) | |
606-715, gnl|canFam2|chr35 (18439728-18439845) | |
606-715, gnl|danRer3|chr19 (48883491-48883374) | |
606-715, gnl|dasNov1|scaffold_49736 (5770-5655) | |
606-715, gnl|echTel1|scaffold_316077 (100873-100988) | |
606-715, gnl|fr1|chrUn (115604804-115604921) | |
606-715, gnl|galGal2|chr2 (61293820-61293935) | |
606-715, gnl|hg17|chr6 (16386990-16387107) | |
606-715, gnl|Hg17|chr6 (16386990-16387099) | |
606-715, gnl|loxAfr1|scaffold_56628 (3123-3008) | |
606-715, gnl|mm7|chr13 (44982764-44982881) | |
606-715, gnl|Mm7|chr13 (44982764-44982873) | |
606-715, gnl|monDom2|scaffold_3 (105125602-105125718) | |
606-715, gnl|oryCun1|scaffold_113921 (1106-989) | |
606-715, gnl|panTro1|chr5 (16754069-16754186) | |
606-715, gnl|rheMac2|chr4 (16296407-16296524) | |
606-715, gnl|rn3|chr17 (25164983-25164866) | |
606-715, gnl|tetNig1|chr21 (1507900-1507783) | |
917-1367, gnl|bosTau2|chr23 (35924528-35924080) | |
917-1367, gnl|Hg17|chr6 (16403213-16403711) | |
917-1367, gnl|Mm7|chr13 (44996344-44996813) | |
918-1096, gnl|bosTau2|chr10 (12260838-12260660) | |
918-1096, gnl|Hg17|chr14 (23777633-23777811) | |
918-1096, gnl|Mm7|chr14 (50545574-50545752) |
Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
7-153, gnl|bosTau2|chr23 (35984448-35984302) | |
7-153, gnl|Hg17|chr6 (16346848-16346995) | |
7-153, gnl|Mm7|chr13 (44958100-44958221) | |
351-528, gnl|bosTau2|chr10 (12263391-12263214) | |
351-528, gnl|canFam2|chr8 (7223485-7223683) | |
351-528, gnl|danRer3|chr7 (11546884-11547067) | |
351-528, gnl|dasNov1|scaffold_243328 (715-521) | |
351-528, gnl|echTel1|scaffold_316077 (99676-99873) | |
351-528, gnl|fr1|chrUn (223164196-223164000) | |
351-528, gnl|hg17|chr14 (23775002-23775200) | |
351-528, gnl|Hg17|chr14 (23775010-23775187) | |
351-528, gnl|loxAfr1|scaffold_5042 (6406-6599) | |
351-528, gnl|mm7|chr14 (50542898-50543099) | |
351-528, gnl|Mm7|chr14 (50542908-50543085) | |
351-528, gnl|monDom2|scaffold_12 (25537020-25536821) | |
351-528, gnl|oryCun1|scaffold_178102 (115666-115865) | |
351-528, gnl|panTro1|chr15 (22677045-22677243) | |
351-528, gnl|rheMac2|chr7 (87129815-87130013) | |
351-528, gnl|rn3|chr15 (33840523-33840725) | |
351-528, gnl|tetNig1|chrUn_random (21385869-21385677) | |
351-528, gnl|xenTro1|scaffold_53 (610688-610877) | |
606-715, gnl|bosTau2|chr23 (35947931-35947822) | |
606-715, gnl|canFam2|chr35 (18439728-18439845) | |
606-715, gnl|danRer3|chr19 (48883491-48883374) | |
606-715, gnl|dasNov1|scaffold_49736 (5770-5655) | |
606-715, gnl|echTel1|scaffold_316077 (100873-100988) | |
606-715, gnl|fr1|chrUn (115604804-115604921) | |
606-715, gnl|galGal2|chr2 (61293820-61293935) | |
606-715, gnl|hg17|chr6 (16386990-16387107) | |
606-715, gnl|Hg17|chr6 (16386990-16387099) | |
606-715, gnl|loxAfr1|scaffold_56628 (3123-3008) | |
606-715, gnl|mm7|chr13 (44982764-44982881) | |
606-715, gnl|Mm7|chr13 (44982764-44982873) | |
606-715, gnl|monDom2|scaffold_3 (105125602-105125718) | |
606-715, gnl|oryCun1|scaffold_113921 (1106-989) | |
606-715, gnl|panTro1|chr5 (16754069-16754186) | |
606-715, gnl|rheMac2|chr4 (16296407-16296524) | |
606-715, gnl|rn3|chr17 (25164983-25164866) | |
606-715, gnl|tetNig1|chr21 (1507900-1507783) | |
917-1367, gnl|bosTau2|chr23 (35924528-35924080) | |
917-1367, gnl|Hg17|chr6 (16403213-16403711) | |
917-1367, gnl|Mm7|chr13 (44996344-44996813) | |
918-1096, gnl|bosTau2|chr10 (12260838-12260660) | |
918-1096, gnl|Hg17|chr14 (23777633-23777811) | |
918-1096, gnl|Mm7|chr14 (50545574-50545752) |
Expressed library(ies): 10 entry(ies) | More info |
Expressed library(ies): 10 entry(ies) | Help | Less info |
mas (0.42061) | |
jej (0.296765) | |
ese (0.253004) | |
nms (0.213858) | |
fty (0.17584) | |
ill (0.175593) | |
hyp (0.142837) | |
hlv (0.139256) | |
jca (0.11396) | |
cty (0.10408) |
Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
mas (0.42061) | |
jej (0.296765) | |
ese (0.253004) | |
nms (0.213858) | |
fty (0.17584) | |
ill (0.175593) | |
hyp (0.142837) | |
hlv (0.139256) | |
jca (0.11396) | |
cty (0.10408) |