Non-Coding RNA Search

Ss1.1-Spl1-SPL01F040049.5.5

Sequence:


               
               CAAGGCCAACGTCAAGGCCGCCTGGGGAAAGGTGGGGGACGCTTCTGGTCCCGACCCAGA
CTCAGAAAGAACCCACCATGGTGCTGTCTGCCGCCGACAAGGCCAACGTCAAGGCCGCCT
GGGGAAAGGTGGGCGGCCAAGCTGGCGCACACGGCGCAGAGGCCCTGGAAAGAATGTTCC
TGGGCTTCCCCACCACCAAGACCTACTTCCCCCACTTCAACCTGAGCCACGGCTCCGACC
AGGTCAAGGCCCATGGCCAGAAGGTGGCTGATGCGCTGACCAAAGCTGTGGGCCACCTGG
ATGACCTGCCCGGCGCCCTGTCTGCTCTGAGCGACCTGCACGCCCACAAGCTGCGTGTGG
ACCCGGTCAACTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCACC
CCGATGATTTCAACCCCTCCGTTCACGCCTCTCTGGACAAGTTCCTGGCCAACGTGAGCA
CCGTGCTGACCTCCAAATACCGTTAAGCTGGAGCCTCGGAGATCCCCGCCCCGGGGTGGG
GCCCTCTTGCACTCTGCACACCCCCCCTTGCACCCTGACCTCCTGATCGTTGAATAAAGC
CTGAGTGGGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGCCAACGTCAAGGCCGCCTGGGGAAAGGTGGGGGACGCTTCTGGTCCCGACCCAGA
CTCAGAAAGAACCCACCATGGTGCTGTCTGCCGCCGACAAGGCCAACGTCAAGGCCGCCT
GGGGAAAGGTGGGCGGCCAAGCTGGCGCACACGGCGCAGAGGCCCTGGAAAGAATGTTCC
TGGGCTTCCCCACCACCAAGACCTACTTCCCCCACTTCAACCTGAGCCACGGCTCCGACC
AGGTCAAGGCCCATGGCCAGAAGGTGGCTGATGCGCTGACCAAAGCTGTGGGCCACCTGG
ATGACCTGCCCGGCGCCCTGTCTGCTCTGAGCGACCTGCACGCCCACAAGCTGCGTGTGG
ACCCGGTCAACTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCACC
CCGATGATTTCAACCCCTCCGTTCACGCCTCTCTGGACAAGTTCCTGGCCAACGTGAGCA
CCGTGCTGACCTCCAAATACCGTTAAGCTGGAGCCTCGGAGATCCCCGCCCCGGGGTGGG
GCCCTCTTGCACTCTGCACACCCCCCCTTGCACCCTGACCTCCTGATCGTTGAATAAAGC
CTGAGTGGGCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|70237|pir||HAPG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|70237|pir||HAPG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               171-377, gnl|bosTau2|chr25 (2633659-2633865)
               

               
               171-377, gnl|Hg17|chr16 (166926-167132)
               

               
               171-377, gnl|Mm7|chr11 (32235932-32236138)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-377, gnl|bosTau2|chr25 (2633659-2633865)
               

               
               171-377, gnl|Hg17|chr16 (166926-167132)
               

               
               171-377, gnl|Mm7|chr11 (32235932-32236138)

Expressed library(ies): 46 entry(ies)

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Expressed library(ies): 46 entry(ies)

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               nbm (164.283)
               

               
               eli (136.025)
               

               
               nca (37.7772)
               

               
               elu (26.5896)
               

               
               fli (25.563)
               

               
               csp (20.793)
               

               
               eep (18.1395)
               

               
               eru (16.3265)
               

               
               ese (15.1803)
               

               
               nmm (9.69456)
               

               
               nlu (9.00901)
               

               
               cbl (6.19906)
               

               
               eye (3.92157)
               

               
               eje (3.85452)
               

               
               ute (3.05404)
               

               
               amn (2.92398)
               

               
               med (1.86003)
               

               
               ece (1.83444)
               

               
               ebs (1.77452)
               

               
               fty (1.7584)
               

               
               nje (1.6592)
               

               
               nep (1.4714)
               

               
               cov (1.18937)
               

               
               pty (1.14172)
               

               
               jca (1.1396)
               

               
               nco (1.13214)
               

               
               fce (1.08637)
               

               
               cly (0.965135)
               

               
               ecc (0.805246)
               

               
               hyp (0.714184)
               

               
               nms (0.641574)
               

               
               pla (0.534688)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               clu (0.119646)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (164.283)
               

               
               eli (136.025)
               

               
               nca (37.7772)
               

               
               elu (26.5896)
               

               
               fli (25.563)
               

               
               csp (20.793)
               

               
               eep (18.1395)
               

               
               eru (16.3265)
               

               
               ese (15.1803)
               

               
               nmm (9.69456)
               

               
               nlu (9.00901)
               

               
               cbl (6.19906)
               

               
               eye (3.92157)
               

               
               eje (3.85452)
               

               
               ute (3.05404)
               

               
               amn (2.92398)
               

               
               med (1.86003)
               

               
               ece (1.83444)
               

               
               ebs (1.77452)
               

               
               fty (1.7584)
               

               
               nje (1.6592)
               

               
               nep (1.4714)
               

               
               cov (1.18937)
               

               
               pty (1.14172)
               

               
               jca (1.1396)
               

               
               nco (1.13214)
               

               
               fce (1.08637)
               

               
               cly (0.965135)
               

               
               ecc (0.805246)
               

               
               hyp (0.714184)
               

               
               nms (0.641574)
               

               
               pla (0.534688)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               clu (0.119646)

	171-377, gnl\|bosTau2\|chr25 (2633659-2633865)
	171-377, gnl\|Hg17\|chr16 (166926-167132)
	171-377, gnl\|Mm7\|chr11 (32235932-32236138)

	nbm (164.283)
	eli (136.025)
	nca (37.7772)
	elu (26.5896)
	fli (25.563)
	csp (20.793)
	eep (18.1395)
	eru (16.3265)
	ese (15.1803)
	nmm (9.69456)
	nlu (9.00901)
	cbl (6.19906)
	eye (3.92157)
	eje (3.85452)
	ute (3.05404)
	amn (2.92398)
	med (1.86003)
	ece (1.83444)
	ebs (1.77452)
	fty (1.7584)
	nje (1.6592)
	nep (1.4714)
	cov (1.18937)
	pty (1.14172)
	jca (1.1396)
	nco (1.13214)
	fce (1.08637)
	cly (0.965135)
	ecc (0.805246)
	hyp (0.714184)
	nms (0.641574)
	pla (0.534688)
	hea (0.408998)
	fcc (0.39557)
	ton (0.351)
	fbs (0.350693)
	fhi (0.339155)
	cag (0.302389)
	jej (0.296765)
	lnt (0.284616)
	mas (0.210305)
	mcp (0.170648)
	cli (0.152812)
	hlv (0.139256)
	che (0.136314)
	clu (0.119646)