Ss1.1-Spl1-SPL01F040091.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTGCATTGTTTAACATACTTAGAAAATGAAGTGTTCATTTTTAACATTCCTCCTCCA ATTGGTTTAATGCTGAATTACTGAAGAGGGCTAAGCAAAACCAGGTGCTTTCCCTGTCGT CTCTCCAGTGGTTCGGAGAACCCAGGCTCTCCCCTTGTCCTCTCCACGACTTGCTCGGCC CCCCCGGAATAAAAATAGCGGCGAGCCCCACAGGCCCAGAGGAGGCCCAAGTTCACGAAC TGCTCCGAGGGTCCCGTGCGCGGAGAGCTCTCCCTCTCTGCCCCCCGCTGCTCCTGCCCA CGCGTCTTGGACATGCCAGGATTAAAAAGGATACTCACGGCCACCATTCTGGCGCTCTGT CTTCCAAGTCCTGGGGATGCGCAGCAACAATGCACTAACGGCTTTGACCTGGACCGCTCG TCAGGACAGTGTTTAGATATCGATGAGTGCCGGACTATCCCCGAGGCCTGCCGAGGAGAC ATGATGTGTGTTAACCAAAACGGCGGGTATTTGTGCATCCCCCGAACGAACCCAGTGTAC CGAGGGCCCTACTCCAACCCCTACTCCAACCCCTACTCAGGGCCGTACCCAGCAGCTGCA CCCCCGCTGTCAGCTCCAAACTACCCCACGATTTCGAGGCCTCTCATATGTCGCTTTGGA TACCAGATGGATGAAAGCAACCAGTGTGTGGATGTGGACGAGTGTGCAACAGATTCCCAC CAGTGCAACCCTACCCAGATCTGCATCAACACGGAAGGAGGGTACACCTGCTCCTGCACC GACGGCTACTGGCTCCTCGAAGGCCAGTGCTTAGACATTGACGAATGTCGTTATGGCTAC TGCCAGCAGCTATGCGCGAATGTCCCCGGATCCTATTCTTGTACGTGCAACCCTGGTTTT ACCCTCAACGAGGATGGGAGGTCTTGCCAAGACGTGAACGAGTGTGCAACCGAGAACCCC TGCGTGCAAACCTGCGTCAACACCTATGGCTCTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTGCATTGTTTAACATACTTAGAAAATGAAGTGTTCATTTTTAACATTCCTCCTCCA ATTGGTTTAATGCTGAATTACTGAAGAGGGCTAAGCAAAACCAGGTGCTTTCCCTGTCGT CTCTCCAGTGGTTCGGAGAACCCAGGCTCTCCCCTTGTCCTCTCCACGACTTGCTCGGCC CCCCCGGAATAAAAATAGCGGCGAGCCCCACAGGCCCAGAGGAGGCCCAAGTTCACGAAC TGCTCCGAGGGTCCCGTGCGCGGAGAGCTCTCCCTCTCTGCCCCCCGCTGCTCCTGCCCA CGCGTCTTGGACATGCCAGGATTAAAAAGGATACTCACGGCCACCATTCTGGCGCTCTGT CTTCCAAGTCCTGGGGATGCGCAGCAACAATGCACTAACGGCTTTGACCTGGACCGCTCG TCAGGACAGTGTTTAGATATCGATGAGTGCCGGACTATCCCCGAGGCCTGCCGAGGAGAC ATGATGTGTGTTAACCAAAACGGCGGGTATTTGTGCATCCCCCGAACGAACCCAGTGTAC CGAGGGCCCTACTCCAACCCCTACTCCAACCCCTACTCAGGGCCGTACCCAGCAGCTGCA CCCCCGCTGTCAGCTCCAAACTACCCCACGATTTCGAGGCCTCTCATATGTCGCTTTGGA TACCAGATGGATGAAAGCAACCAGTGTGTGGATGTGGACGAGTGTGCAACAGATTCCCAC CAGTGCAACCCTACCCAGATCTGCATCAACACGGAAGGAGGGTACACCTGCTCCTGCACC GACGGCTACTGGCTCCTCGAAGGCCAGTGCTTAGACATTGACGAATGTCGTTATGGCTAC TGCCAGCAGCTATGCGCGAATGTCCCCGGATCCTATTCTTGTACGTGCAACCCTGGTTTT ACCCTCAACGAGGATGGGAGGTCTTGCCAAGACGTGAACGAGTGTGCAACCGAGAACCCC TGCGTGCAAACCTGCGTCAACACCTATGGCTCTTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-330, gnl|bosTau2|chr21 (36402280-36401939) | |
| 1-330, gnl|canFam2|chr8 (4229489-4229761) | |
| 1-330, gnl|dasNov1|scaffold_5868 (37890-37671) | |
| 1-330, gnl|echTel1|scaffold_286499 (12092-11854) | |
| 1-330, gnl|galGal2|chr5 (41323513-41323748) | |
| 1-330, gnl|hg17|chr14 (91483296-91483534) | |
| 1-330, gnl|Hg17|chr14 (91483633-91483309) | |
| 1-330, gnl|loxAfr1|scaffold_218427 (250-4) | |
| 1-330, gnl|mm7|chr12 (99314071-99314260) | |
| 1-330, gnl|monDom2|scaffold_8 (29782367-29782609) | |
| 1-330, gnl|panTro1|chr15 (91859174-91859412) | |
| 1-330, gnl|rheMac2|chr7 (155159895-155160133) | |
| 1-330, gnl|rn3|chr6 (126101725-126101914) | |
| 435-694, gnl|bosTau2|chr21 (36391648-36391389) | |
| 435-694, gnl|canFam2|chr8 (4220767-4220941) | |
| 435-694, gnl|dasNov1|scaffold_5868 (46647-46473) | |
| 435-694, gnl|galGal2|chr5 (41317964-41318125) | |
| 435-694, gnl|hg17|chr14 (91473036-91473210) | |
| 435-694, gnl|Hg17|chr14 (91473300-91473041) | |
| 435-694, gnl|loxAfr1|scaffold_83982 (606-432) | |
| 435-694, gnl|mm7|chr12 (99305060-99305234) | |
| 435-694, gnl|Mm7|chr12 (99305324-99305065) | |
| 435-694, gnl|monDom2|scaffold_8 (29769245-29769407) | |
| 435-694, gnl|oryCun1|scaffold_175920 (23186-23012) | |
| 435-694, gnl|panTro1|chr15 (91848912-91849086) | |
| 435-694, gnl|rheMac2|chr7 (155149583-155149757) | |
| 435-694, gnl|rn3|chr6 (126092828-126093002) | |
| 435-694, gnl|xenTro1|scaffold_22 (2746322-2746472) | |
| 813-931, gnl|bosTau2|chr21 (36287227-36287109) | |
| 813-931, gnl|Hg17|chr14 (91427436-91427318) | |
| 813-931, gnl|Mm7|chr12 (99263863-99263745) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-330, gnl|bosTau2|chr21 (36402280-36401939) | |
| 1-330, gnl|canFam2|chr8 (4229489-4229761) | |
| 1-330, gnl|dasNov1|scaffold_5868 (37890-37671) | |
| 1-330, gnl|echTel1|scaffold_286499 (12092-11854) | |
| 1-330, gnl|galGal2|chr5 (41323513-41323748) | |
| 1-330, gnl|hg17|chr14 (91483296-91483534) | |
| 1-330, gnl|Hg17|chr14 (91483633-91483309) | |
| 1-330, gnl|loxAfr1|scaffold_218427 (250-4) | |
| 1-330, gnl|mm7|chr12 (99314071-99314260) | |
| 1-330, gnl|monDom2|scaffold_8 (29782367-29782609) | |
| 1-330, gnl|panTro1|chr15 (91859174-91859412) | |
| 1-330, gnl|rheMac2|chr7 (155159895-155160133) | |
| 1-330, gnl|rn3|chr6 (126101725-126101914) | |
| 435-694, gnl|bosTau2|chr21 (36391648-36391389) | |
| 435-694, gnl|canFam2|chr8 (4220767-4220941) | |
| 435-694, gnl|dasNov1|scaffold_5868 (46647-46473) | |
| 435-694, gnl|galGal2|chr5 (41317964-41318125) | |
| 435-694, gnl|hg17|chr14 (91473036-91473210) | |
| 435-694, gnl|Hg17|chr14 (91473300-91473041) | |
| 435-694, gnl|loxAfr1|scaffold_83982 (606-432) | |
| 435-694, gnl|mm7|chr12 (99305060-99305234) | |
| 435-694, gnl|Mm7|chr12 (99305324-99305065) | |
| 435-694, gnl|monDom2|scaffold_8 (29769245-29769407) | |
| 435-694, gnl|oryCun1|scaffold_175920 (23186-23012) | |
| 435-694, gnl|panTro1|chr15 (91848912-91849086) | |
| 435-694, gnl|rheMac2|chr7 (155149583-155149757) | |
| 435-694, gnl|rn3|chr6 (126092828-126093002) | |
| 435-694, gnl|xenTro1|scaffold_22 (2746322-2746472) | |
| 813-931, gnl|bosTau2|chr21 (36287227-36287109) | |
| 813-931, gnl|Hg17|chr14 (91427436-91427318) | |
| 813-931, gnl|Mm7|chr12 (99263863-99263745) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eep (0.245128) | |
| nep (0.183925) | |
| csp (0.161186) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| nep (0.183925) | |
| csp (0.161186) | |
| clu (0.119646) |