Non-Coding RNA Search

Ss1.1-Spl1-SPL01F050058.5

Sequence:


               
               AGCAGCGCAGCGACGGCGGCGGCAGCGGCGGCGGCGGTTGCGATTCGGAGCCGTTGAGAC
GCCTCTGCGGCAGCTGGTGGCGCAGGTGGCTTGCGTGGACGCGGGCAGAGGCGGCCGGTC
CGCCACCGCAGCCCCAGCGCCCGCGGCCCCGGCAGGAGCGTCGGGACACCCCGAGGCATC
CTCTCCCTCCCGCCGCCCAGGGGAGCCTCGGCTCCCCTCCGCCCTCCCGCATCCCCTCGG
CGTCCGCACCACCGCTCCTCCTCCCTGGGCTTCGGACCCCCGGCCTCGCCCCCGAAACAT
GACTCGTGATTTCAAACCTGGGGATCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTG
GCCAGCTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACC
CATTTTCTTTTTTGGAACTCATGAGACTGCTTTTTTAGGCCCAAAGGATATATTTCCTTA
CTCAGAAAATAAGGAAAAGTACGGCAAACCAAATAAACGAAAAGGCTTTAATGAAGGTTT
ATGGGAGATAGAAACAATCCGAAAGTGAAATTTTCAAGTCAACAGGCATCTGCTAAACAA
TCAAATGCATCATCTGATGTTGAAGTTGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGAT
ACTGACCATGAAGAAAAAGCCAGCAATGAGGATATGACTAAAGCAATTGACATAACTACT
CCAAAAGCTGCCAGAAGAGGGAGAAAGAGAAAGGCAGAAAAACAAGTAGAAACTGAGGAG
GCAGGAGTAGTGACAACAGCAGCAGCATCTGTTAATCTGAAAGTGAGTCCTAAAAGAGGA
CGGCCTGCAGCTACAGAAGTCAAGATTCCAAAACCAAGAGGCAGACCCAAAATGGTAAAG
CAGCCATGTCCTTCAGAGAGTGACATGGTAACTGAAGAAGACAAAAGTAAGAAAAAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCGCAGCGACGGCGGCGGCAGCGGCGGCGGCGGTTGCGATTCGGAGCCGTTGAGAC
GCCTCTGCGGCAGCTGGTGGCGCAGGTGGCTTGCGTGGACGCGGGCAGAGGCGGCCGGTC
CGCCACCGCAGCCCCAGCGCCCGCGGCCCCGGCAGGAGCGTCGGGACACCCCGAGGCATC
CTCTCCCTCCCGCCGCCCAGGGGAGCCTCGGCTCCCCTCCGCCCTCCCGCATCCCCTCGG
CGTCCGCACCACCGCTCCTCCTCCCTGGGCTTCGGACCCCCGGCCTCGCCCCCGAAACAT
GACTCGTGATTTCAAACCTGGGGATCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTG
GCCAGCTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACC
CATTTTCTTTTTTGGAACTCATGAGACTGCTTTTTTAGGCCCAAAGGATATATTTCCTTA
CTCAGAAAATAAGGAAAAGTACGGCAAACCAAATAAACGAAAAGGCTTTAATGAAGGTTT
ATGGGAGATAGAAACAATCCGAAAGTGAAATTTTCAAGTCAACAGGCATCTGCTAAACAA
TCAAATGCATCATCTGATGTTGAAGTTGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGAT
ACTGACCATGAAGAAAAAGCCAGCAATGAGGATATGACTAAAGCAATTGACATAACTACT
CCAAAAGCTGCCAGAAGAGGGAGAAAGAGAAAGGCAGAAAAACAAGTAGAAACTGAGGAG
GCAGGAGTAGTGACAACAGCAGCAGCATCTGTTAATCTGAAAGTGAGTCCTAAAAGAGGA
CGGCCTGCAGCTACAGAAGTCAAGATTCCAAAACCAAGAGGCAGACCCAAAATGGTAAAG
CAGCCATGTCCTTCAGAGAGTGACATGGTAACTGAAGAAGACAAAAGTAAGAAAAAGGGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-165, gnl|bosTau2|chr8 (14312428-14312265)
               

               
               1-165, gnl|Hg17|chr9 (15500968-15500806)
               

               
               1-165, gnl|Mm7|chr4 (82890158-82889958)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr8 (14312428-14312265)
               

               
               1-165, gnl|Hg17|chr9 (15500968-15500806)
               

               
               1-165, gnl|Mm7|chr4 (82890158-82889958)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               pgl (0.236967)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)

	1-165, gnl\|bosTau2\|chr8 (14312428-14312265)
	1-165, gnl\|Hg17\|chr9 (15500968-15500806)
	1-165, gnl\|Mm7\|chr4 (82890158-82889958)