Non-Coding RNA Search

Ss1.1-Spl1-SPL01F070053.5

Sequence:


               
               CGCGCCGCCGCTGCAGGATAGCTGACAGCCAGGAGAAACATAGTGGAAAATGCAAAACAA
CGAAATCATAAAACCTGCCAAATACTTCTCAGAATTGGAAAAGAGCATCCTCCTTGCTTT
AGTAGAAAAGTACAAGTATGTGCTGGAGTGTAAGAAAAGCGACGCGCGAACTATTGCCCT
CAAGCAGCGTACCTGGCAGGCGCTCGCCCACGAATATAACTCCCAACCCAGTGTGTCGCT
GCGGGATTTCAAACAGCTGAAGAAGTGCTGGGAGAACATCAAGGCTCGGACCAAAAAGAT
TATGGCCCATGAAAGGAGAGAGAAAGTGAAACGGAGCGTCAGCCCGCTTCTGAGCACCCA
CGTCCTGGGGAAGGAGAAGATCGCCAACATGCTGCCCGAGCAGCTGTACTTCCTGCAGAG
CCCTCCTGAGGAGGAGCCCGAGTACCACGCTGATGCCGCCGCCCAAGAATCATTTGCTGT
TTCAAATAGAGAACTGTGCGATGATGAGAAAGAGTTCATACATTTTCCAGTATGTGAGGG
GACCTCTCAACCTGAACCCTCGTGTTCAGCTGTCAGAATAACAGCCACTAAAAACTACAG
GAGCAAAACCTCTCAGGAAGGTGCTTTAAAAAAGATGCATGAGGAAGAACACCATCAACA
AATGTCCATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCCGCCGCTGCAGGATAGCTGACAGCCAGGAGAAACATAGTGGAAAATGCAAAACAA
CGAAATCATAAAACCTGCCAAATACTTCTCAGAATTGGAAAAGAGCATCCTCCTTGCTTT
AGTAGAAAAGTACAAGTATGTGCTGGAGTGTAAGAAAAGCGACGCGCGAACTATTGCCCT
CAAGCAGCGTACCTGGCAGGCGCTCGCCCACGAATATAACTCCCAACCCAGTGTGTCGCT
GCGGGATTTCAAACAGCTGAAGAAGTGCTGGGAGAACATCAAGGCTCGGACCAAAAAGAT
TATGGCCCATGAAAGGAGAGAGAAAGTGAAACGGAGCGTCAGCCCGCTTCTGAGCACCCA
CGTCCTGGGGAAGGAGAAGATCGCCAACATGCTGCCCGAGCAGCTGTACTTCCTGCAGAG
CCCTCCTGAGGAGGAGCCCGAGTACCACGCTGATGCCGCCGCCCAAGAATCATTTGCTGT
TTCAAATAGAGAACTGTGCGATGATGAGAAAGAGTTCATACATTTTCCAGTATGTGAGGG
GACCTCTCAACCTGAACCCTCGTGTTCAGCTGTCAGAATAACAGCCACTAAAAACTACAG
GAGCAAAACCTCTCAGGAAGGTGCTTTAAAAAAGATGCATGAGGAAGAACACCATCAACA
AATGTCCATCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958654|emb|CAI12541.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958654|emb|CAI12541.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-372, - strand, RNAz p=0.936569

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-372, - strand, RNAz p=0.936569

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-467, gnl|bosTau2|chr8 (49482206-49482659)
               

               
               14-467, gnl|Hg17|chr9 (100283740-100284193)
               

               
               14-467, gnl|Mm7|chr4 (48566191-48566644)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-467, gnl|bosTau2|chr8 (49482206-49482659)
               

               
               14-467, gnl|Hg17|chr9 (100283740-100284193)
               

               
               14-467, gnl|Mm7|chr4 (48566191-48566644)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	14-467, gnl\|bosTau2\|chr8 (49482206-49482659)
	14-467, gnl\|Hg17\|chr9 (100283740-100284193)
	14-467, gnl\|Mm7\|chr4 (48566191-48566644)