Ss1.1-Spl1-SPL01F070079.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTTACGGCACCGGCCGCTGCGCGCGCATCTCTCCTCCTTTCCCGATTCCTTGAAGCGCAG GCTGTGGCGCGGTCTCCGGCCTGCACTATCTCTCGCCATCGGGGCCGGCTAAAGCCGTTG CGGGTTTTAGAAGATGGCGAAGTTCATGACACCTGTGATCCAAGACAACCCTTCAGGCTG GGGTCCCTGTGCGGTTCCTGAGCAGTTTCGGGATATGCCCTACCAGCCATTCAGCAAAGG AGATCGGCTCGGAAAGGTTGCCGACTGGACGGGGGCCACGTACCAAGACAAGAGGTACAC AAATAAGTACTCCTCTCAGTTTGGAGGTGGGAGTCAGTATGCCTACTTCCACGAGGAGGA CGAAACTAGCTTCCAGCTGGTGGACACGGCGCGCACACAGAAGACCGCCTACCAGCGGAA TCGGATGCGATTTGCACAGCGGAACCTCCGCAGAGACAAAGATCGACGGAACATGTTGCA GTTCAACCTGCAGACCCTGCCTAAGAGCGCCAAGCAGAAGGAGAGAGAACGCATTCGACT GCAAAAAAAATTCCAGAAACAGTTTGGAGTGAGGCAGAAATGGGACCAAAAATCGCAGAA GCCCCGAGACTCTTCGGTGGAGGTGCGCAGTGACTGGGAGGTGAAGGAGGAGATGGACTT CCCGCAGTTGATGAAGATGCGCTACTTAGAAGTGTCCGAGCCCCAGGACATCGAGTGCTG CGGGGCCCTGGAGTACTACGACAAAGCCTTCGACCGCATCACCACCAGGAGTGAGAAGCC GCTGCGGAGCATCAAGCGCATCTTCCACACCGTCACCACCACGGACGACCCCGTCATCCG GAAGCTGGCAAAAACTCAGGGGAACGTGTTTGCCACCGACGCCATCCTGGCCACACTGAT GAGCTGCACCCGCTCCGTGTACTCCTGGGACATTGTCGTCCAGAGGGTCGGGTCCAAGCT CTTCTTTGACAAGAGGGACAACTCTGACTTTGACCTCCTGACCGTGAGTGAGACAGCCAA CGAGCCCCCTCAAGACGAAGGTAACTCCTTCAACTCGCCCCGCAACCTGGCCATGGAAGC CACCTACATCAACCACAACTTCTCCCAGCAGTGCTTGAGGATGGGGAAGGAAAGGTACAA CTTCCCCAACCCAAACCCATTTGTGGAGGACGACATGGACAAGAACGAGATCGCCTCCGT GGCCTACCGTTACCGCAGGTGGAAGCTGGGAGACGACATCGACCTCATCGTCCGCTGTGA GCACGACGGCGTCATGACCGGAGCCAACGGGGAGGTGTCCTTCATCAACATCAAGACGCT CAACGAGTGGGACTCGCGGCACTGTAACGGCGTCGACTGGCGTCAGAAGCTGGATTCCCA GCGAGGGGCCGTCATCGCCACCGAGTTGAAGAACAACAGCTACAAGTTGGCCCGATGGAC CTGCTGTGCGCTGCTGGCCGGGTCCGAGTACCTCAAGCTTGGGTACGTGTCCCGGTACCA CGTGAAAGACTCCTCCCGCCACGTCATCCTGGGCACCCAGCAGTTCAAGCCAAACGAATT CGCCAGCCAGATCAACCTGAGCGTGGAGAACGCCTGGGGCATCCTGCGCTGCGTCATCGA CATCTGCATGAAGCTGGAGGAGGGCAAGTACCTCATCCTCAAAGACCCCAACAAGCAGGT CATCCGCGTCTACAGCCTGCCCGACGGCACCTTCAGCTCCGATGAGGATGACGAGGAGGA GGAGGAAGAGGAGGAGGAGGAAGAAGAGGAAGAAACTTAAACCAGATGGCGACGTGGAGC CGGAGTCTGTACTCCCGCGGAGCCTGCGAGGGCTTTGGGTGCCTGCTGGAGTGTTTGTCT GATCCTTGCTCTCTGAAGCCTGACAGTTGGAATAAAGTAAAAGTCTGTGTAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTTACGGCACCGGCCGCTGCGCGCGCATCTCTCCTCCTTTCCCGATTCCTTGAAGCGCAG GCTGTGGCGCGGTCTCCGGCCTGCACTATCTCTCGCCATCGGGGCCGGCTAAAGCCGTTG CGGGTTTTAGAAGATGGCGAAGTTCATGACACCTGTGATCCAAGACAACCCTTCAGGCTG GGGTCCCTGTGCGGTTCCTGAGCAGTTTCGGGATATGCCCTACCAGCCATTCAGCAAAGG AGATCGGCTCGGAAAGGTTGCCGACTGGACGGGGGCCACGTACCAAGACAAGAGGTACAC AAATAAGTACTCCTCTCAGTTTGGAGGTGGGAGTCAGTATGCCTACTTCCACGAGGAGGA CGAAACTAGCTTCCAGCTGGTGGACACGGCGCGCACACAGAAGACCGCCTACCAGCGGAA TCGGATGCGATTTGCACAGCGGAACCTCCGCAGAGACAAAGATCGACGGAACATGTTGCA GTTCAACCTGCAGACCCTGCCTAAGAGCGCCAAGCAGAAGGAGAGAGAACGCATTCGACT GCAAAAAAAATTCCAGAAACAGTTTGGAGTGAGGCAGAAATGGGACCAAAAATCGCAGAA GCCCCGAGACTCTTCGGTGGAGGTGCGCAGTGACTGGGAGGTGAAGGAGGAGATGGACTT CCCGCAGTTGATGAAGATGCGCTACTTAGAAGTGTCCGAGCCCCAGGACATCGAGTGCTG CGGGGCCCTGGAGTACTACGACAAAGCCTTCGACCGCATCACCACCAGGAGTGAGAAGCC GCTGCGGAGCATCAAGCGCATCTTCCACACCGTCACCACCACGGACGACCCCGTCATCCG GAAGCTGGCAAAAACTCAGGGGAACGTGTTTGCCACCGACGCCATCCTGGCCACACTGAT GAGCTGCACCCGCTCCGTGTACTCCTGGGACATTGTCGTCCAGAGGGTCGGGTCCAAGCT CTTCTTTGACAAGAGGGACAACTCTGACTTTGACCTCCTGACCGTGAGTGAGACAGCCAA CGAGCCCCCTCAAGACGAAGGTAACTCCTTCAACTCGCCCCGCAACCTGGCCATGGAAGC CACCTACATCAACCACAACTTCTCCCAGCAGTGCTTGAGGATGGGGAAGGAAAGGTACAA CTTCCCCAACCCAAACCCATTTGTGGAGGACGACATGGACAAGAACGAGATCGCCTCCGT GGCCTACCGTTACCGCAGGTGGAAGCTGGGAGACGACATCGACCTCATCGTCCGCTGTGA GCACGACGGCGTCATGACCGGAGCCAACGGGGAGGTGTCCTTCATCAACATCAAGACGCT CAACGAGTGGGACTCGCGGCACTGTAACGGCGTCGACTGGCGTCAGAAGCTGGATTCCCA GCGAGGGGCCGTCATCGCCACCGAGTTGAAGAACAACAGCTACAAGTTGGCCCGATGGAC CTGCTGTGCGCTGCTGGCCGGGTCCGAGTACCTCAAGCTTGGGTACGTGTCCCGGTACCA CGTGAAAGACTCCTCCCGCCACGTCATCCTGGGCACCCAGCAGTTCAAGCCAAACGAATT CGCCAGCCAGATCAACCTGAGCGTGGAGAACGCCTGGGGCATCCTGCGCTGCGTCATCGA CATCTGCATGAAGCTGGAGGAGGGCAAGTACCTCATCCTCAAAGACCCCAACAAGCAGGT CATCCGCGTCTACAGCCTGCCCGACGGCACCTTCAGCTCCGATGAGGATGACGAGGAGGA GGAGGAAGAGGAGGAGGAGGAAGAAGAGGAAGAAACTTAAACCAGATGGCGACGTGGAGC CGGAGTCTGTACTCCCGCGGAGCCTGCGAGGGCTTTGGGTGCCTGCTGGAGTGTTTGTCT GATCCTTGCTCTCTGAAGCCTGACAGTTGGAATAAAGTAAAAGTCTGTGTAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
596-1766, + strand, RNAz p=0.710311 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
596-1766, + strand, RNAz p=0.710311 |
Aligned organism(s): 64 entry(ies) | More info |
Aligned organism(s): 64 entry(ies) | Help | Less info |
123-258, gnl|bosTau2|chr5 (45485201-45485336) | |
123-258, gnl|canFam2|chr10 (30965477-30965319) | |
123-258, gnl|danRer3|chr3 (23758322-23758185) | |
123-258, gnl|dasNov1|scaffold_218047 (975-815) | |
123-258, gnl|echTel1|scaffold_240070 (9141-9303) | |
123-258, gnl|fr1|chrUn (188842301-188842451) | |
123-258, gnl|galGal2|chr1 (48428735-48428609) | |
123-258, gnl|hg17|chr22 (35246526-35246688) | |
123-258, gnl|Hg17|chr22 (35246679-35246544) | |
123-258, gnl|loxAfr1|scaffold_30462 (4569-4407) | |
123-258, gnl|mm7|chr15 (78051406-78051550) | |
123-258, gnl|Mm7|chr15 (78051542-78051407) | |
123-258, gnl|monDom2|scaffold_34 (1827089-1826927) | |
123-258, gnl|panTro1|chr23 (35409152-35409314) | |
123-258, gnl|rheMac2|chr10 (80437570-80437732) | |
123-258, gnl|rn3|chr7 (115921389-115921533) | |
123-258, gnl|tetNig1|chr3 (14574278-14574415) | |
123-258, gnl|xenTro1|scaffold_425 (901512-901659) | |
300-439, gnl|bosTau2|chr5 (45486799-45486938) | |
300-439, gnl|canFam2|chr10 (30966802-30966616) | |
300-439, gnl|danRer3|chr3 (23758671-23758516) | |
300-439, gnl|dasNov1|scaffold_68987 (1466-1653) | |
300-439, gnl|echTel1|scaffold_240070 (7956-8117) | |
300-439, gnl|fr1|chrUn (188841939-188842117) | |
300-439, gnl|galGal2|chr1 (48429677-48429527) | |
300-439, gnl|hg17|chr22 (35245126-35245312) | |
300-439, gnl|Hg17|chr22 (35245282-35245143) | |
300-439, gnl|loxAfr1|scaffold_30462 (5901-5717) | |
300-439, gnl|mm7|chr15 (78050241-78050424) | |
300-439, gnl|Mm7|chr15 (78050394-78050255) | |
300-439, gnl|monDom2|scaffold_34 (1827701-1827549) | |
300-439, gnl|oryCun1|scaffold_106730 (3137-3319) | |
300-439, gnl|panTro1|chr23 (35407754-35407940) | |
300-439, gnl|rheMac2|chr10 (80435875-80436061) | |
300-439, gnl|rn3|chr7 (115920132-115920309) | |
300-439, gnl|tetNig1|chr3 (14573936-14574085) | |
300-439, gnl|xenTro1|scaffold_425 (898710-898874) | |
596-711, gnl|bosTau2|chr5 (45489692-45489807) | |
596-711, gnl|Hg17|chr22 (35241238-35241123) | |
596-711, gnl|Mm7|chr15 (78047970-78047855) | |
833-992, gnl|bosTau2|chr5 (45491078-45491238) | |
833-992, gnl|Hg17|chr22 (35239470-35239310) | |
833-992, gnl|Mm7|chr15 (78046299-78046130) | |
1209-1335, gnl|bosTau2|chr5 (45493319-45493445) | |
1209-1335, gnl|canFam2|chr10 (30973007-30972862) | |
1209-1335, gnl|danRer3|chr3 (23768719-23768582) | |
1209-1335, gnl|echTel1|scaffold_282871 (38809-38681) | |
1209-1335, gnl|fr1|chrUn (188840096-188840249) | |
1209-1335, gnl|galGal2|chr1 (48433026-48432887) | |
1209-1335, gnl|hg17|chr22 (35237004-35237158) | |
1209-1335, gnl|Hg17|chr22 (35237155-35237029) | |
1209-1335, gnl|loxAfr1|scaffold_30462 (12197-12044) | |
1209-1335, gnl|mm7|chr15 (78044557-78044699) | |
1209-1335, gnl|Mm7|chr15 (78044696-78044570) | |
1209-1335, gnl|monDom2|scaffold_34 (1831539-1831380) | |
1209-1335, gnl|oryCun1|scaffold_155174 (2149-2009) | |
1209-1335, gnl|panTro1|chr23 (35399620-35399774) | |
1209-1335, gnl|rheMac2|chr10 (80427654-80427808) | |
1209-1335, gnl|rn3|chr7 (115914197-115914342) | |
1209-1335, gnl|tetNig1|chr3 (14571920-14572057) | |
1209-1335, gnl|xenTro1|scaffold_425 (893360-893497) | |
1484-1766, gnl|bosTau2|chr5 (45496078-45496360) | |
1484-1766, gnl|Hg17|chr22 (35232332-35232050) | |
1484-1766, gnl|Mm7|chr15 (78042746-78042464) |
Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
123-258, gnl|bosTau2|chr5 (45485201-45485336) | |
123-258, gnl|canFam2|chr10 (30965477-30965319) | |
123-258, gnl|danRer3|chr3 (23758322-23758185) | |
123-258, gnl|dasNov1|scaffold_218047 (975-815) | |
123-258, gnl|echTel1|scaffold_240070 (9141-9303) | |
123-258, gnl|fr1|chrUn (188842301-188842451) | |
123-258, gnl|galGal2|chr1 (48428735-48428609) | |
123-258, gnl|hg17|chr22 (35246526-35246688) | |
123-258, gnl|Hg17|chr22 (35246679-35246544) | |
123-258, gnl|loxAfr1|scaffold_30462 (4569-4407) | |
123-258, gnl|mm7|chr15 (78051406-78051550) | |
123-258, gnl|Mm7|chr15 (78051542-78051407) | |
123-258, gnl|monDom2|scaffold_34 (1827089-1826927) | |
123-258, gnl|panTro1|chr23 (35409152-35409314) | |
123-258, gnl|rheMac2|chr10 (80437570-80437732) | |
123-258, gnl|rn3|chr7 (115921389-115921533) | |
123-258, gnl|tetNig1|chr3 (14574278-14574415) | |
123-258, gnl|xenTro1|scaffold_425 (901512-901659) | |
300-439, gnl|bosTau2|chr5 (45486799-45486938) | |
300-439, gnl|canFam2|chr10 (30966802-30966616) | |
300-439, gnl|danRer3|chr3 (23758671-23758516) | |
300-439, gnl|dasNov1|scaffold_68987 (1466-1653) | |
300-439, gnl|echTel1|scaffold_240070 (7956-8117) | |
300-439, gnl|fr1|chrUn (188841939-188842117) | |
300-439, gnl|galGal2|chr1 (48429677-48429527) | |
300-439, gnl|hg17|chr22 (35245126-35245312) | |
300-439, gnl|Hg17|chr22 (35245282-35245143) | |
300-439, gnl|loxAfr1|scaffold_30462 (5901-5717) | |
300-439, gnl|mm7|chr15 (78050241-78050424) | |
300-439, gnl|Mm7|chr15 (78050394-78050255) | |
300-439, gnl|monDom2|scaffold_34 (1827701-1827549) | |
300-439, gnl|oryCun1|scaffold_106730 (3137-3319) | |
300-439, gnl|panTro1|chr23 (35407754-35407940) | |
300-439, gnl|rheMac2|chr10 (80435875-80436061) | |
300-439, gnl|rn3|chr7 (115920132-115920309) | |
300-439, gnl|tetNig1|chr3 (14573936-14574085) | |
300-439, gnl|xenTro1|scaffold_425 (898710-898874) | |
596-711, gnl|bosTau2|chr5 (45489692-45489807) | |
596-711, gnl|Hg17|chr22 (35241238-35241123) | |
596-711, gnl|Mm7|chr15 (78047970-78047855) | |
833-992, gnl|bosTau2|chr5 (45491078-45491238) | |
833-992, gnl|Hg17|chr22 (35239470-35239310) | |
833-992, gnl|Mm7|chr15 (78046299-78046130) | |
1209-1335, gnl|bosTau2|chr5 (45493319-45493445) | |
1209-1335, gnl|canFam2|chr10 (30973007-30972862) | |
1209-1335, gnl|danRer3|chr3 (23768719-23768582) | |
1209-1335, gnl|echTel1|scaffold_282871 (38809-38681) | |
1209-1335, gnl|fr1|chrUn (188840096-188840249) | |
1209-1335, gnl|galGal2|chr1 (48433026-48432887) | |
1209-1335, gnl|hg17|chr22 (35237004-35237158) | |
1209-1335, gnl|Hg17|chr22 (35237155-35237029) | |
1209-1335, gnl|loxAfr1|scaffold_30462 (12197-12044) | |
1209-1335, gnl|mm7|chr15 (78044557-78044699) | |
1209-1335, gnl|Mm7|chr15 (78044696-78044570) | |
1209-1335, gnl|monDom2|scaffold_34 (1831539-1831380) | |
1209-1335, gnl|oryCun1|scaffold_155174 (2149-2009) | |
1209-1335, gnl|panTro1|chr23 (35399620-35399774) | |
1209-1335, gnl|rheMac2|chr10 (80427654-80427808) | |
1209-1335, gnl|rn3|chr7 (115914197-115914342) | |
1209-1335, gnl|tetNig1|chr3 (14571920-14572057) | |
1209-1335, gnl|xenTro1|scaffold_425 (893360-893497) | |
1484-1766, gnl|bosTau2|chr5 (45496078-45496360) | |
1484-1766, gnl|Hg17|chr22 (35232332-35232050) | |
1484-1766, gnl|Mm7|chr15 (78042746-78042464) |
Expressed library(ies): 40 entry(ies) | More info |
Expressed library(ies): 40 entry(ies) | Help | Less info |
csp (0.805932) | |
col (0.585023) | |
jej (0.494609) | |
cag (0.453583) | |
hyp (0.42851) | |
nbm (0.397298) | |
ese (0.379507) | |
gul (0.355177) | |
fty (0.351679) | |
jca (0.34188) | |
cst (0.280073) | |
nca (0.273748) | |
fce (0.271592) | |
pla (0.267344) | |
cov (0.264306) | |
eru (0.240096) | |
ece (0.229305) | |
cty (0.20816) | |
fli (0.202881) | |
eje (0.197668) | |
cmu (0.186393) | |
nep (0.183925) | |
ill (0.175593) | |
fbs (0.175346) | |
mcp (0.170648) | |
cut (0.169924) | |
nje (0.16592) | |
cki (0.165235) | |
cli (0.152812) | |
pty (0.142714) | |
lnt (0.142308) | |
csk (0.140746) | |
hlv (0.139256) | |
ssp (0.13552) | |
ste (0.135208) | |
eep (0.122564) | |
cly (0.120642) | |
clu (0.119646) | |
ecc (0.115035) | |
spc (0.113366) |
Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
csp (0.805932) | |
col (0.585023) | |
jej (0.494609) | |
cag (0.453583) | |
hyp (0.42851) | |
nbm (0.397298) | |
ese (0.379507) | |
gul (0.355177) | |
fty (0.351679) | |
jca (0.34188) | |
cst (0.280073) | |
nca (0.273748) | |
fce (0.271592) | |
pla (0.267344) | |
cov (0.264306) | |
eru (0.240096) | |
ece (0.229305) | |
cty (0.20816) | |
fli (0.202881) | |
eje (0.197668) | |
cmu (0.186393) | |
nep (0.183925) | |
ill (0.175593) | |
fbs (0.175346) | |
mcp (0.170648) | |
cut (0.169924) | |
nje (0.16592) | |
cki (0.165235) | |
cli (0.152812) | |
pty (0.142714) | |
lnt (0.142308) | |
csk (0.140746) | |
hlv (0.139256) | |
ssp (0.13552) | |
ste (0.135208) | |
eep (0.122564) | |
cly (0.120642) | |
clu (0.119646) | |
ecc (0.115035) | |
spc (0.113366) |