Ss1.1-Spl1-SPL01F080071.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAAAGGATTCTGAAGCCAAAAATAGAGAATTATTAGAAGAAATGGAAATTTTGAAGAAG AAGATGGAAGAAAAATTTAGAACAGATGCTGGACTCAAACTTCCAGATTTCCAGGATTCC ATTTTTGAATATTTCAACACTGCACCTCTTGCACATGATCTGACGTTTAGAGCCAGCTCA GCTAGTGAGCAGGAAACACAAGCCGCAAAGCCAGAGGCGATGCCCCCAAGCTCTGTGGCC GCGAGCACAGAACAGCAGGAGGACGTGGCTCGGGCCCCTCAGAGGCCACCCACCGTGCCG CTGCCCAGCACTCAGGCCCTCGCTCTGGCTGGACCAAAGGTAGGGGCCTTGCTCTTCCCC ACGGGGCTTCTCAGTGTGAGGCGACTTGCCTGGAAGCAAGATGGACTTCCTGTTTCCACG TACGTGGGAACGTTTTATTATGAATGGTGTGTGATCCAGAAAGGGCCAGGACCCTGGGCT TTCTTAATTAAACTAATGTCCCATCAGTGCATTTTAATTGGGAAACGTCAGGAGTGGGCC CGGCCCCCTTTCTCCCCCCACGCCGCGCGCCCTCCTCCGGTGGTAGCCACTCTGCGTCTG TCAAGTCCTGTCTCCACCTGCGTTGCCTTTTATCCGGCTGCGCCTCGAGCCTTGGGGACC ACGTGGTTTACGGGAGGCTGTTTCTCAGCCTGACGGGATTGTGCCAAACGTGCAGCCTCG TACCTGGTCCGGTTACCTTGGAGGTCGGGCCCCTCTTCAGACGTCATACACGCGTCGCGC CGAGATATTCCGTGTATATTCAGGGTGACGGCCTCTCTCTTAGGTACACCTTCTAAGACC AGCTCACTGCTCATTCTGACAGAAAATGAGAACGAGAAGAGGAAGTGGGTTGGGATTCTG GAAGGCCTGCAGTCCATCCTGCAGAAGAACCGCCTGAGGAGCCAGGTGGTGCACTCCCCC CAGGAGGCCTACGACAGCTCCCTGCCCCTCATCAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAAAGGATTCTGAAGCCAAAAATAGAGAATTATTAGAAGAAATGGAAATTTTGAAGAAG AAGATGGAAGAAAAATTTAGAACAGATGCTGGACTCAAACTTCCAGATTTCCAGGATTCC ATTTTTGAATATTTCAACACTGCACCTCTTGCACATGATCTGACGTTTAGAGCCAGCTCA GCTAGTGAGCAGGAAACACAAGCCGCAAAGCCAGAGGCGATGCCCCCAAGCTCTGTGGCC GCGAGCACAGAACAGCAGGAGGACGTGGCTCGGGCCCCTCAGAGGCCACCCACCGTGCCG CTGCCCAGCACTCAGGCCCTCGCTCTGGCTGGACCAAAGGTAGGGGCCTTGCTCTTCCCC ACGGGGCTTCTCAGTGTGAGGCGACTTGCCTGGAAGCAAGATGGACTTCCTGTTTCCACG TACGTGGGAACGTTTTATTATGAATGGTGTGTGATCCAGAAAGGGCCAGGACCCTGGGCT TTCTTAATTAAACTAATGTCCCATCAGTGCATTTTAATTGGGAAACGTCAGGAGTGGGCC CGGCCCCCTTTCTCCCCCCACGCCGCGCGCCCTCCTCCGGTGGTAGCCACTCTGCGTCTG TCAAGTCCTGTCTCCACCTGCGTTGCCTTTTATCCGGCTGCGCCTCGAGCCTTGGGGACC ACGTGGTTTACGGGAGGCTGTTTCTCAGCCTGACGGGATTGTGCCAAACGTGCAGCCTCG TACCTGGTCCGGTTACCTTGGAGGTCGGGCCCCTCTTCAGACGTCATACACGCGTCGCGC CGAGATATTCCGTGTATATTCAGGGTGACGGCCTCTCTCTTAGGTACACCTTCTAAGACC AGCTCACTGCTCATTCTGACAGAAAATGAGAACGAGAAGAGGAAGTGGGTTGGGATTCTG GAAGGCCTGCAGTCCATCCTGCAGAAGAACCGCCTGAGGAGCCAGGTGGTGCACTCCCCC CAGGAGGCCTACGACAGCTCCCTGCCCCTCATCAAG |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 397-729, gnl|bosTau2|chr21 (47108325-47107976) | |
| 397-729, gnl|Hg17|chr14 (102490169-102489843) | |
| 804-996, gnl|bosTau2|chr21 (47103487-47103295) | |
| 804-996, gnl|canFam2|chr8 (73866196-73866390) | |
| 804-996, gnl|danRer3|chr20 (18732373-18732560) | |
| 804-996, gnl|dasNov1|scaffold_3857 (27002-27189) | |
| 804-996, gnl|echTel1|scaffold_294940 (59085-59277) | |
| 804-996, gnl|fr1|chrUn (182841632-182841441) | |
| 804-996, gnl|galGal2|chr5 (46727443-46727633) | |
| 804-996, gnl|hg17|chr14 (102482550-102482743) | |
| 804-996, gnl|Hg17|chr14 (102482775-102482583) | |
| 804-996, gnl|loxAfr1|scaffold_16380 (318-508) | |
| 804-996, gnl|mm7|chr12 (108818425-108818617) | |
| 804-996, gnl|Mm7|chr12 (108818649-108818457) | |
| 804-996, gnl|monDom2|scaffold_6 (87007007-87007200) | |
| 804-996, gnl|oryCun1|scaffold_146799 (14559-14366) | |
| 804-996, gnl|panTro1|chr15 (103092669-103092862) | |
| 804-996, gnl|rheMac2|chr7 (166262045-166262238) | |
| 804-996, gnl|rn3|chr6 (136070134-136070325) | |
| 804-996, gnl|tetNig1|chrUn_random (50561325-50561146) | |
| 804-996, gnl|xenTro1|scaffold_127 (1009364-1009560) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 397-729, gnl|bosTau2|chr21 (47108325-47107976) | |
| 397-729, gnl|Hg17|chr14 (102490169-102489843) | |
| 804-996, gnl|bosTau2|chr21 (47103487-47103295) | |
| 804-996, gnl|canFam2|chr8 (73866196-73866390) | |
| 804-996, gnl|danRer3|chr20 (18732373-18732560) | |
| 804-996, gnl|dasNov1|scaffold_3857 (27002-27189) | |
| 804-996, gnl|echTel1|scaffold_294940 (59085-59277) | |
| 804-996, gnl|fr1|chrUn (182841632-182841441) | |
| 804-996, gnl|galGal2|chr5 (46727443-46727633) | |
| 804-996, gnl|hg17|chr14 (102482550-102482743) | |
| 804-996, gnl|Hg17|chr14 (102482775-102482583) | |
| 804-996, gnl|loxAfr1|scaffold_16380 (318-508) | |
| 804-996, gnl|mm7|chr12 (108818425-108818617) | |
| 804-996, gnl|Mm7|chr12 (108818649-108818457) | |
| 804-996, gnl|monDom2|scaffold_6 (87007007-87007200) | |
| 804-996, gnl|oryCun1|scaffold_146799 (14559-14366) | |
| 804-996, gnl|panTro1|chr15 (103092669-103092862) | |
| 804-996, gnl|rheMac2|chr7 (166262045-166262238) | |
| 804-996, gnl|rn3|chr6 (136070134-136070325) | |
| 804-996, gnl|tetNig1|chrUn_random (50561325-50561146) | |
| 804-996, gnl|xenTro1|scaffold_127 (1009364-1009560) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |