Non-Coding RNA Search

Ss1.1-Spl1-SPL01F080094.5

Sequence:


               
               CTCCTGGATGAGGAAGTGAGCCGTGCACTCAATGCGGAGACCCCTAAGTCATCCCCACTT
CCGGCCAAGGGACGAGATCCAGTGGAGATACTCATCCCCAAAGATATTACTGACCCTCTC
AGTCTCAATACTTGCACTGATGAGGCCCAAGTAGTCCTTGCTTCACCACTCAAGACTGGT
CGGAAGCGGCATAGACATCGGGGACAGCACCACCAGCAGCAGCAGCAGCAGCAGGCAACT
GGAGGGAATGATAGCCACTCCGTGCTGCCCACAGCCCCCCTCACTCCCTCACTCCAAGGG
GAGGGCACCACACAGCAGCAGCGGCAAAGGGGCCAGAACCGGGACGTCCCCCAACCCTAT
GAACTCAACACAGCCATCAACTGCAGGGATGAGGTCGTGTCTCCCCTTCCATCTGCCCTA
CAGGGTCCCTCAGGCTCCCTTTCAGCCCCTTCAGCTGCCTCAGTTACCTCTGCACCCCCG
TCTTCCTCCTCACGACATCGCAAACGTCGCAGGACTTCCAGCAAGTCAGAGGCAGGGGCT
AGGGGTGGAGGCCAGGGTCCCAAGGAAAAGGGCAGAGGGAGTGGGGGAGGCCGCCAACAC
CCCCACCCACTACCTGCAGCAGGCTTCAAAAAGCAGCAGTGCAAGTTCCAGTATGGGAAT
TATTGCAAGTACTATGGGTACCGCAATCCTTCCTGTGAGGATGGGCGCCTTCGGGTTATG
AAGCCTGAGTGGTTTCGGGGTCGTGACGTCCTAGATCTGGGCTGCAACGTGGGCCATCTG
ACTCTGAGCATTGCCTGTAAGTGGGGCCCATCCCGCATGGTGGGCCTGGACATTGATCCC
CATCTCATCCACTCGGCCCGCCAAAACATCCGACACTACTTGTCTGAAGAGCTGCGTCAG
CCACCCCAGACTTCTGAGGGGGACCCAGGAACAGAGGGTGAGGAAGGGACCTCAACCGTC
CAAAAGAGGAGCTGCTTCCCAGCTTCCCTGACCGCCAGCCGGGGTCCCATCGCTGCACCC
CAAGTGCCCTTGGATGGAGCAGACACGTCCGTCTTCCCCAACAATGTTGTCTTCGTCACG
GGTAACTATGTGCTGGATCGAGATGAGCTGGTGGAGGCCCAAAAACCTGAGTATGATGTG
GTGCTCTGCCTCAGCCTCACCAAGTGGGTGCATCTCAACTGGGGAGACGAGGGGCTGAAG
CGCATGTTTCGCCGGATCTATCTGCACCTCCGCCCTGGGGGCATCCTGGTCCTGGAGCCC
CAACCTTGGTCAACCTACGGCAAGAGAAAGACTCTCACGGAAACAATCTACAAGAACTAC
TATCGAATTCAGCTGAAGCCAGAGCAGTTCAGTTCCTACCTGACATCCCCAGAGGTGGGC
TTCTCCAGCTATGAGCTTGTGGCCACACCTCACAACACCTCCAAAGGCTTCCAGCGTCCT
GTGTACCTGTTCCACAAGGCCTCTTCCCCCAGCCACTAAGTGGCCTCCTGAACAGAGAGT
ATGAAGAAGCTGCCCACTGCTCCTGAGGACCTGGGGGAAGAGGAAGTATCCCAAGGTCTT
TCCTTTCTGGCTCCAAAAATACTTTCCTTTCTTGGATCTGCAAAGAACGCTTTTCTTATG
TTGCTGCCCCAGCCTCTCCCCTACACCTCTGGCACCTAAGCCCAGCTGTGCTGGAGTTAC
CATCTTCCTCTCCCCCGGCCCACTGGGCTGGATGGCATGGACTGTTTGCTGACCTCTGTT
CTCCTAGGGCATGGGAGGTAGAGTTACCAAGTTCTCTAGCCTCTTCTTCCTGTCCTCCCA
AGGAGAGATTCCCATTTCTCCTCAGCCCTTGTCCCTAGCTGCGTTTCAGTGGACCACGGA
TAGATGGACTAAGGGTTAAGAGGGGGAAGGTGGCGGGGAGGCATACAGGTACTGTGAAAA
TCCTTCCCTCTGCTGTCCCCCACTGGGAGAGGGGTTTGGGTTTGGATTGTGAGAACAGCA
CAATAAACTTGATGTTTAGGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGGATGAGGAAGTGAGCCGTGCACTCAATGCGGAGACCCCTAAGTCATCCCCACTT
CCGGCCAAGGGACGAGATCCAGTGGAGATACTCATCCCCAAAGATATTACTGACCCTCTC
AGTCTCAATACTTGCACTGATGAGGCCCAAGTAGTCCTTGCTTCACCACTCAAGACTGGT
CGGAAGCGGCATAGACATCGGGGACAGCACCACCAGCAGCAGCAGCAGCAGCAGGCAACT
GGAGGGAATGATAGCCACTCCGTGCTGCCCACAGCCCCCCTCACTCCCTCACTCCAAGGG
GAGGGCACCACACAGCAGCAGCGGCAAAGGGGCCAGAACCGGGACGTCCCCCAACCCTAT
GAACTCAACACAGCCATCAACTGCAGGGATGAGGTCGTGTCTCCCCTTCCATCTGCCCTA
CAGGGTCCCTCAGGCTCCCTTTCAGCCCCTTCAGCTGCCTCAGTTACCTCTGCACCCCCG
TCTTCCTCCTCACGACATCGCAAACGTCGCAGGACTTCCAGCAAGTCAGAGGCAGGGGCT
AGGGGTGGAGGCCAGGGTCCCAAGGAAAAGGGCAGAGGGAGTGGGGGAGGCCGCCAACAC
CCCCACCCACTACCTGCAGCAGGCTTCAAAAAGCAGCAGTGCAAGTTCCAGTATGGGAAT
TATTGCAAGTACTATGGGTACCGCAATCCTTCCTGTGAGGATGGGCGCCTTCGGGTTATG
AAGCCTGAGTGGTTTCGGGGTCGTGACGTCCTAGATCTGGGCTGCAACGTGGGCCATCTG
ACTCTGAGCATTGCCTGTAAGTGGGGCCCATCCCGCATGGTGGGCCTGGACATTGATCCC
CATCTCATCCACTCGGCCCGCCAAAACATCCGACACTACTTGTCTGAAGAGCTGCGTCAG
CCACCCCAGACTTCTGAGGGGGACCCAGGAACAGAGGGTGAGGAAGGGACCTCAACCGTC
CAAAAGAGGAGCTGCTTCCCAGCTTCCCTGACCGCCAGCCGGGGTCCCATCGCTGCACCC
CAAGTGCCCTTGGATGGAGCAGACACGTCCGTCTTCCCCAACAATGTTGTCTTCGTCACG
GGTAACTATGTGCTGGATCGAGATGAGCTGGTGGAGGCCCAAAAACCTGAGTATGATGTG
GTGCTCTGCCTCAGCCTCACCAAGTGGGTGCATCTCAACTGGGGAGACGAGGGGCTGAAG
CGCATGTTTCGCCGGATCTATCTGCACCTCCGCCCTGGGGGCATCCTGGTCCTGGAGCCC
CAACCTTGGTCAACCTACGGCAAGAGAAAGACTCTCACGGAAACAATCTACAAGAACTAC
TATCGAATTCAGCTGAAGCCAGAGCAGTTCAGTTCCTACCTGACATCCCCAGAGGTGGGC
TTCTCCAGCTATGAGCTTGTGGCCACACCTCACAACACCTCCAAAGGCTTCCAGCGTCCT
GTGTACCTGTTCCACAAGGCCTCTTCCCCCAGCCACTAAGTGGCCTCCTGAACAGAGAGT
ATGAAGAAGCTGCCCACTGCTCCTGAGGACCTGGGGGAAGAGGAAGTATCCCAAGGTCTT
TCCTTTCTGGCTCCAAAAATACTTTCCTTTCTTGGATCTGCAAAGAACGCTTTTCTTATG
TTGCTGCCCCAGCCTCTCCCCTACACCTCTGGCACCTAAGCCCAGCTGTGCTGGAGTTAC
CATCTTCCTCTCCCCCGGCCCACTGGGCTGGATGGCATGGACTGTTTGCTGACCTCTGTT
CTCCTAGGGCATGGGAGGTAGAGTTACCAAGTTCTCTAGCCTCTTCTTCCTGTCCTCCCA
AGGAGAGATTCCCATTTCTCCTCAGCCCTTGTCCCTAGCTGCGTTTCAGTGGACCACGGA
TAGATGGACTAAGGGTTAAGAGGGGGAAGGTGGCGGGGAGGCATACAGGTACTGTGAAAA
TCCTTCCCTCTGCTGTCCCCCACTGGGAGAGGGGTTTGGGTTTGGATTGTGAGAACAGCA
CAATAAACTTGATGTTTAGGGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|7020228|dbj|BAA91040.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7020228|dbj|BAA91040.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               397-630, - strand, RNAz p=0.942059
               

               
               1621-1871, - strand, RNAz p=0.997216

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-630, - strand, RNAz p=0.942059
               

               
               1621-1871, - strand, RNAz p=0.997216

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1081, gnl|bosTau2|chr25 (32520113-32519045)
               

               
               1-1081, gnl|Hg17|chr7 (99672890-99673964)
               

               
               1-1081, gnl|Mm7|chr5 (136703542-136702462)
               


               
               1425-2004, gnl|bosTau2|chr25 (32517216-32516629)
               

               
               1425-2004, gnl|Hg17|chr7 (99675774-99676383)
               

               
               1425-2004, gnl|Mm7|chr5 (136700488-136699919)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1081, gnl|bosTau2|chr25 (32520113-32519045)
               

               
               1-1081, gnl|Hg17|chr7 (99672890-99673964)
               

               
               1-1081, gnl|Mm7|chr5 (136703542-136702462)
               


               
               1425-2004, gnl|bosTau2|chr25 (32517216-32516629)
               

               
               1425-2004, gnl|Hg17|chr7 (99675774-99676383)
               

               
               1425-2004, gnl|Mm7|chr5 (136700488-136699919)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cag (0.453583)
               

               
               eru (0.360144)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               eru (0.360144)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	397-630, - strand, RNAz p=0.942059
	1621-1871, - strand, RNAz p=0.997216

	1-1081, gnl\|bosTau2\|chr25 (32520113-32519045)
	1-1081, gnl\|Hg17\|chr7 (99672890-99673964)
	1-1081, gnl\|Mm7\|chr5 (136703542-136702462)

	1425-2004, gnl\|bosTau2\|chr25 (32517216-32516629)
	1425-2004, gnl\|Hg17\|chr7 (99675774-99676383)
	1425-2004, gnl\|Mm7\|chr5 (136700488-136699919)

	cag (0.453583)
	eru (0.360144)
	fli (0.202881)
	col (0.195008)
	ill (0.175593)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	pty (0.142714)
	hlv (0.139256)
	nmm (0.132802)
	ute (0.132784)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)