Ss1.1-Spl1-SPL01F090088.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGGTCACCGGCATCCTTGCGAGGCGGACACGCTGGAACAACGTATATCTTTAGCAAAG GTGGTGGACAAATCACGTATAAGTGGCCTCCTAATGACCGACCAAGTACACGAGCAGACA GACTGGCTATAGGGTTTAGCACTGTTCAGAAAGAAGCTGTATTGGTGCGAGTGGACAGTT CTTCTGGCCTGGGTGACTACCTAGAGCTGCATATACATCAAGGAAAAATTGGAGTTAAAT TTAATGTTGGGACAGATGACATCGCCATCGAAGAGTCCAATGCAATCATTAACGATGGGA AATACCATGTAGTCCGTTTCACGAGGAGTGGCGGCAATGCCACGTTACAGGTGGACAGCT GGCCAGTGATTGAGCGCTACCCTGCAGGAAACAATGATAACGAGCGCCTGGCGATTGCTA GACAGCGAATTCCATATCGACTTGGTCGAGTAGTTGATGAATGGCTACTCGACAAAGGGC GTCAGCTCACAATCTTCAATAGCCAAGCAACCATAATAATTGGCGGGAAAGAGCAGGGCC AGCCCTTCCAGGGTCAGCTCTCTGGGCTTTACTACAATGGCTTGAAAGTTCTGAATATGG CAGCCGAAAATGATGCCAACATCGCCATAGTGGGAAATGTGAGACTGGTTGGTGAAGTGC CTTCCTCTATGACAACCGAGTCGACAGCCACTGCCATGCAGTCAGAGATGTCCACGTCAA TTATGGAGACCACCACGACCCTGGCTACTAGCACAGCCAGAAGAGGAAAGCCCCCTACGA AAGAACCTATTAGCCAGACCACAGATGACATCCTTGTGGCCTCAGCAGAATGCCCCAGCG ATGATGAGGACATTGACCCCTGTGAGCCGAGCTCAGGTGGGTTAGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGGTCACCGGCATCCTTGCGAGGCGGACACGCTGGAACAACGTATATCTTTAGCAAAG GTGGTGGACAAATCACGTATAAGTGGCCTCCTAATGACCGACCAAGTACACGAGCAGACA GACTGGCTATAGGGTTTAGCACTGTTCAGAAAGAAGCTGTATTGGTGCGAGTGGACAGTT CTTCTGGCCTGGGTGACTACCTAGAGCTGCATATACATCAAGGAAAAATTGGAGTTAAAT TTAATGTTGGGACAGATGACATCGCCATCGAAGAGTCCAATGCAATCATTAACGATGGGA AATACCATGTAGTCCGTTTCACGAGGAGTGGCGGCAATGCCACGTTACAGGTGGACAGCT GGCCAGTGATTGAGCGCTACCCTGCAGGAAACAATGATAACGAGCGCCTGGCGATTGCTA GACAGCGAATTCCATATCGACTTGGTCGAGTAGTTGATGAATGGCTACTCGACAAAGGGC GTCAGCTCACAATCTTCAATAGCCAAGCAACCATAATAATTGGCGGGAAAGAGCAGGGCC AGCCCTTCCAGGGTCAGCTCTCTGGGCTTTACTACAATGGCTTGAAAGTTCTGAATATGG CAGCCGAAAATGATGCCAACATCGCCATAGTGGGAAATGTGAGACTGGTTGGTGAAGTGC CTTCCTCTATGACAACCGAGTCGACAGCCACTGCCATGCAGTCAGAGATGTCCACGTCAA TTATGGAGACCACCACGACCCTGGCTACTAGCACAGCCAGAAGAGGAAAGCCCCCTACGA AAGAACCTATTAGCCAGACCACAGATGACATCCTTGTGGCCTCAGCAGAATGCCCCAGCG ATGATGAGGACATTGACCCCTGTGAGCCGAGCTCAGGTGGGTTAGCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 219-388, gnl|bosTau2|chr10 (62959967-62959798) | |
| 219-388, gnl|canFam2|chr8 (55243868-55244080) | |
| 219-388, gnl|danRer3|chr13 (836830-836623) | |
| 219-388, gnl|dasNov1|scaffold_34722 (5498-5312) | |
| 219-388, gnl|echTel1|scaffold_311411 (109277-109489) | |
| 219-388, gnl|fr1|chrUn (12852894-12853097) | |
| 219-388, gnl|galGal2|chr5 (37154679-37154876) | |
| 219-388, gnl|hg17|chr14 (79199839-79200051) | |
| 219-388, gnl|Hg17|chr14 (79199877-79200046) | |
| 219-388, gnl|loxAfr1|scaffold_7133 (21772-21984) | |
| 219-388, gnl|mm7|chr12 (87649119-87649329) | |
| 219-388, gnl|Mm7|chr12 (87649157-87649326) | |
| 219-388, gnl|monDom2|scaffold_8 (53043745-53043522) | |
| 219-388, gnl|oryCun1|scaffold_208883 (213169-212958) | |
| 219-388, gnl|panTro1|chr15 (79280506-79280714) | |
| 219-388, gnl|rheMac2|chr7 (142879483-142879695) | |
| 219-388, gnl|rn3|chr6 (113709602-113709812) | |
| 219-388, gnl|tetNig1|chr14 (8422815-8423011) | |
| 219-388, gnl|xenTro1|scaffold_170 (778950-779156) | |
| 476-764, gnl|bosTau2|chr10 (62922214-62921928) | |
| 476-764, gnl|Hg17|chr14 (79233724-79234010) | |
| 476-764, gnl|Mm7|chr12 (87684743-87685029) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 219-388, gnl|bosTau2|chr10 (62959967-62959798) | |
| 219-388, gnl|canFam2|chr8 (55243868-55244080) | |
| 219-388, gnl|danRer3|chr13 (836830-836623) | |
| 219-388, gnl|dasNov1|scaffold_34722 (5498-5312) | |
| 219-388, gnl|echTel1|scaffold_311411 (109277-109489) | |
| 219-388, gnl|fr1|chrUn (12852894-12853097) | |
| 219-388, gnl|galGal2|chr5 (37154679-37154876) | |
| 219-388, gnl|hg17|chr14 (79199839-79200051) | |
| 219-388, gnl|Hg17|chr14 (79199877-79200046) | |
| 219-388, gnl|loxAfr1|scaffold_7133 (21772-21984) | |
| 219-388, gnl|mm7|chr12 (87649119-87649329) | |
| 219-388, gnl|Mm7|chr12 (87649157-87649326) | |
| 219-388, gnl|monDom2|scaffold_8 (53043745-53043522) | |
| 219-388, gnl|oryCun1|scaffold_208883 (213169-212958) | |
| 219-388, gnl|panTro1|chr15 (79280506-79280714) | |
| 219-388, gnl|rheMac2|chr7 (142879483-142879695) | |
| 219-388, gnl|rn3|chr6 (113709602-113709812) | |
| 219-388, gnl|tetNig1|chr14 (8422815-8423011) | |
| 219-388, gnl|xenTro1|scaffold_170 (778950-779156) | |
| 476-764, gnl|bosTau2|chr10 (62922214-62921928) | |
| 476-764, gnl|Hg17|chr14 (79233724-79234010) | |
| 476-764, gnl|Mm7|chr12 (87684743-87685029) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| ova (0.129132) | |
| ecc (0.115035) |