Non-Coding RNA Search

Ss1.1-Spl1-SPL01F110056.5

Sequence:


               
               AGTGGAGTGCGGCGCTGCACCGCGCACTGTCAGTTTCTGTGACTTGGGGTCCGCGCGGTC
GCACGACACAGCAAGACATCGCGTGTGGTTCTCGGTCCTTTGCGCTCCGCGGTCCGGAGG
GCACCATGGATGACAAGGAGTTAATTGAATACTTTAAGTCTCAAATGAAAGAAGATCCTG
ATATGGCCTCAGCAGTAGCTGCCATCCGGACTTTGCTGGAGTACTTGAAGAGAGATAAAG
GGGAGACAATCCAGGGCCTGAGAGCGAATCTCACCAGTGCCATAGAGACCCTGTGTGGCG
TGGACTCTTCTGTGGCCGTGTCCTCAGGCGGGGAGCTCTTCCTGCGCTTCATCAGCCTTA
CCTCCCTGGAATACTCTGATTACTCCAAATGTAAGAAGATCATGATTGAGCGGGGAGAGA
TTTTTCTCAGGAGAATATCACTGTCGAGAAAGAAAATTGCAGATATGTGCCATACTTTCA
TCAAAGATGGGGCGAGAATACTAACTCACGCCTACTCCAGAGTGGTCCTGCGAGTCTTGG
AAGCAGCCGTGGCAGCCAAGAAGCGTTTCAGTGTATACATTACAGAGTCACAGCCTGACT
TGTCAGGTAAGAAAATGGCCAAAGCCCTCTGCCATCTCAATGTCCCCGTCACTGTGGTCC
TGGATGCTGCTGTTGGCTACATCATGGAGAAAGTGGATCTTGTCATAGTTGGCGCTGAAG
GAGTTGTTGAAAACGGAGGAATTATTAACAAGATTGGAACCAACCAGATGGCCGTATGCG
CCAAAGCACAGAACAAGCCTTTTTATGTTGTTGCAGAGAGTTTCAAGTTTGTACGGCTCT
TCCCACTAAATCAGCAAGACGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGAGTGCGGCGCTGCACCGCGCACTGTCAGTTTCTGTGACTTGGGGTCCGCGCGGTC
GCACGACACAGCAAGACATCGCGTGTGGTTCTCGGTCCTTTGCGCTCCGCGGTCCGGAGG
GCACCATGGATGACAAGGAGTTAATTGAATACTTTAAGTCTCAAATGAAAGAAGATCCTG
ATATGGCCTCAGCAGTAGCTGCCATCCGGACTTTGCTGGAGTACTTGAAGAGAGATAAAG
GGGAGACAATCCAGGGCCTGAGAGCGAATCTCACCAGTGCCATAGAGACCCTGTGTGGCG
TGGACTCTTCTGTGGCCGTGTCCTCAGGCGGGGAGCTCTTCCTGCGCTTCATCAGCCTTA
CCTCCCTGGAATACTCTGATTACTCCAAATGTAAGAAGATCATGATTGAGCGGGGAGAGA
TTTTTCTCAGGAGAATATCACTGTCGAGAAAGAAAATTGCAGATATGTGCCATACTTTCA
TCAAAGATGGGGCGAGAATACTAACTCACGCCTACTCCAGAGTGGTCCTGCGAGTCTTGG
AAGCAGCCGTGGCAGCCAAGAAGCGTTTCAGTGTATACATTACAGAGTCACAGCCTGACT
TGTCAGGTAAGAAAATGGCCAAAGCCCTCTGCCATCTCAATGTCCCCGTCACTGTGGTCC
TGGATGCTGCTGTTGGCTACATCATGGAGAAAGTGGATCTTGTCATAGTTGGCGCTGAAG
GAGTTGTTGAAAACGGAGGAATTATTAACAAGATTGGAACCAACCAGATGGCCGTATGCG
CCAAAGCACAGAACAAGCCTTTTTATGTTGTTGCAGAGAGTTTCAAGTTTGTACGGCTCT
TCCCACTAAATCAGCAAGACGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48145779|emb|CAG33112.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48145779|emb|CAG33112.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-758, gnl|bosTau2|chr14 (11173475-11174222)
               

               
               1-758, gnl|Hg17|chr12 (122641874-122634208)
               

               
               1-758, gnl|Mm7|chr5 (123824402-123818936)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-758, gnl|bosTau2|chr14 (11173475-11174222)
               

               
               1-758, gnl|Hg17|chr12 (122641874-122634208)
               

               
               1-758, gnl|Mm7|chr5 (123824402-123818936)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               cst (0.140036)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               cst (0.140036)
               

               
               med (0.116252)

	1-758, gnl\|bosTau2\|chr14 (11173475-11174222)
	1-758, gnl\|Hg17\|chr12 (122641874-122634208)
	1-758, gnl\|Mm7\|chr5 (123824402-123818936)