Non-Coding RNA Search

Ss1.1-Spl1-SPL01F120057.5

Sequence:


               
               TCCCCCTCACCCCCCAAGGAGATCAAGGTTCCAGAAGCAGCCCTCTCCCCACCACTGGGA
CCCTTCCCCAGCCTGGAGAGTTCATCACTACGTAAGGAAAGCTCCTCCTGCCCCTCCAGA
GCCCCCACTGTGCCTGTCAGAGGCATGCGTTTTTATATTGGATTATTCAAGGACTTCTGC
TGCAAAGATGTTTCTAATGTCTGGGAGAGAAGATAGAATGGGGATGCTGCCCTCAAAGAA
AGGGCTGGGGAGGTGTTTATATAAGGTTCTAATTAACCACTTCTAAGGGTGTACCCCCTC
AAAACTACTGCATTTTTTTATGGATGAAAAAAAGCCCTTCAAAAGGAAGTAGAGATAAAG
AAAAGTCACATTGGAGCTCCCTCCACCCACTGTAAAAAAAATCCAACTTTTACATTTTTT
GGAGGAGAGAGGTGACAGTTTTAGGAAAGGGGAACTGAGGTTCTGGGGAGAACTCTGGGA
TAGAATAGGGTGCAGAATCCGTCTCCTCCAGCCCCAAGTTAGTGACCGAGTCAGCTCCCG
ATCCCCTTTGGCCACCCCATCCCCAGTTTATTCCCACTAACCTCTCCTGCCGCTTCCTCA
GTGTTGCTGTTTTAGGCCACCCCAGCTCAGCCAATGACCCCTTTCCCTCTGAATGTCAGT
TTTGTGTTTTTAAAAGTCACCTGCGTAGTTGACGTCAGCGTATGTGTATTTGGTGGGGAA
ACATTCTGGGGATTCCTGTGGTAGGAAGTAGAGGAAGAAAGGGCATTTGGGGGCTATTCT
GCCCCCTTCCCGGGGGCTCCCAGGGGCCACGGAGATGGGGGCTAGAAGGGGACGGGAAGG
TTTTAAGACGTGAAATTGTCAAAAAGCACTTAAGCACCTCCTTCTTATGACTTGCTAGGT
CACCCCTCCCTCCTCCTCCCTCTCCCACCTAGACCATCGGAACCCTGGCTGGGAGCCAGG
GATTCCCTTGGCCTTTGGGGCAGCAGTGGGGGAGGGGCACCCAGCCTAGGGTTGTGCCGA
CCTCTGGCTCATAGCTGGCAGCCTGGCTCTGCTCCCCCGGATTCCAGTGCCCCCCGGTAC
CAGCTCTCCCCTCTTCGTCCTTGATGCAAAGGCAAATGTGATTCCAGGCCCCACCAGTTC
TTCCCAGTCCCTCCCACCAAGCCCTGTGATCCTCATGTCCCCATGTTTCTCTTCCTCCGC
GTCTTGGCACTTTCCTTCTGTTCAAAAGTTTTCTGTAAATTTTCTTTTTTCTTTTTCTTT
TCTTTTCCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCTCACCCCCCAAGGAGATCAAGGTTCCAGAAGCAGCCCTCTCCCCACCACTGGGA
CCCTTCCCCAGCCTGGAGAGTTCATCACTACGTAAGGAAAGCTCCTCCTGCCCCTCCAGA
GCCCCCACTGTGCCTGTCAGAGGCATGCGTTTTTATATTGGATTATTCAAGGACTTCTGC
TGCAAAGATGTTTCTAATGTCTGGGAGAGAAGATAGAATGGGGATGCTGCCCTCAAAGAA
AGGGCTGGGGAGGTGTTTATATAAGGTTCTAATTAACCACTTCTAAGGGTGTACCCCCTC
AAAACTACTGCATTTTTTTATGGATGAAAAAAAGCCCTTCAAAAGGAAGTAGAGATAAAG
AAAAGTCACATTGGAGCTCCCTCCACCCACTGTAAAAAAAATCCAACTTTTACATTTTTT
GGAGGAGAGAGGTGACAGTTTTAGGAAAGGGGAACTGAGGTTCTGGGGAGAACTCTGGGA
TAGAATAGGGTGCAGAATCCGTCTCCTCCAGCCCCAAGTTAGTGACCGAGTCAGCTCCCG
ATCCCCTTTGGCCACCCCATCCCCAGTTTATTCCCACTAACCTCTCCTGCCGCTTCCTCA
GTGTTGCTGTTTTAGGCCACCCCAGCTCAGCCAATGACCCCTTTCCCTCTGAATGTCAGT
TTTGTGTTTTTAAAAGTCACCTGCGTAGTTGACGTCAGCGTATGTGTATTTGGTGGGGAA
ACATTCTGGGGATTCCTGTGGTAGGAAGTAGAGGAAGAAAGGGCATTTGGGGGCTATTCT
GCCCCCTTCCCGGGGGCTCCCAGGGGCCACGGAGATGGGGGCTAGAAGGGGACGGGAAGG
TTTTAAGACGTGAAATTGTCAAAAAGCACTTAAGCACCTCCTTCTTATGACTTGCTAGGT
CACCCCTCCCTCCTCCTCCCTCTCCCACCTAGACCATCGGAACCCTGGCTGGGAGCCAGG
GATTCCCTTGGCCTTTGGGGCAGCAGTGGGGGAGGGGCACCCAGCCTAGGGTTGTGCCGA
CCTCTGGCTCATAGCTGGCAGCCTGGCTCTGCTCCCCCGGATTCCAGTGCCCCCCGGTAC
CAGCTCTCCCCTCTTCGTCCTTGATGCAAAGGCAAATGTGATTCCAGGCCCCACCAGTTC
TTCCCAGTCCCTCCCACCAAGCCCTGTGATCCTCATGTCCCCATGTTTCTCTTCCTCCGC
GTCTTGGCACTTTCCTTCTGTTCAAAAGTTTTCTGTAAATTTTCTTTTTTCTTTTTCTTT
TCTTTTCCTTTT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               2-275, - strand, RNAz p=0.920565
               

               
               690-832, - strand, RNAz p=0.932454
               

               
               911-1061, - strand, RNAz p=0.99304
               

               
               1102-1219, - strand, RNAz p=0.513048

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-275, - strand, RNAz p=0.920565
               

               
               690-832, - strand, RNAz p=0.932454
               

               
               911-1061, - strand, RNAz p=0.99304
               

               
               1102-1219, - strand, RNAz p=0.513048

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1272, gnl|bosTau2|chr5 (33455108-33456346)
               

               
               2-1272, gnl|Hg17|chr12 (54843719-54842444)
               

               
               2-1272, gnl|Mm7|chr10 (127990698-127991845)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1272, gnl|bosTau2|chr5 (33455108-33456346)
               

               
               2-1272, gnl|Hg17|chr12 (54843719-54842444)
               

               
               2-1272, gnl|Mm7|chr10 (127990698-127991845)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cty (0.31224)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	2-275, - strand, RNAz p=0.920565
	690-832, - strand, RNAz p=0.932454
	911-1061, - strand, RNAz p=0.99304
	1102-1219, - strand, RNAz p=0.513048

	2-1272, gnl\|bosTau2\|chr5 (33455108-33456346)
	2-1272, gnl\|Hg17\|chr12 (54843719-54842444)
	2-1272, gnl\|Mm7\|chr10 (127990698-127991845)

	cty (0.31224)
	mas (0.210305)
	nep (0.183925)
	duo (0.172801)
	hyp (0.142837)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)