Ss1.1-Spl1-SPL01F120070.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCTCTCCTGCCCGCCTGCTTAGCTGCGGGGTGACACGGGGCTTCGCTGGGGAAGGGGG GGGCAGGGAAGCAGATTAGACGGCCTGGCGGCGGCGGCAACACGACCCCCCAATATTTAT GTAATTGCCCAAAGACCACTGATGAATATATGTTGGAATAACTGCTGAAACTGAATCTTA TTAACCAGAAAGCAGACCGTCCTTTGTTTCACTTCTTTTTGTTTTCCCTACTGCTTTGAG TTTTATTGTAACAGCTGAAAAACTTGGAAAATAAAATGAACATACTGTGGTCTTGAACAC AATTTTTTTTTTTGAGGAAAAATTAAAGTGCCAGAGTGAAAGCCAGAATGGCATCCAGAG AGAGACTCTTCGAACTTTGGATGCTTTATTGTGCGAAGAAAGATCCAGATTATCTGAAGC TGTGGTTGGACAATTTTGTTTCTAGCTACGAACAATTCTTAGATGTTGACTTTGAAAAGC TTCCTACCAGGGTAGATGATGTGCCTCCAGGAATATCTCTGCTTCCTGATAATATTCTGC AGGTTCTGAGGAGCCAGCTTCTACAGTGTGTTCAGAAAATGGCAGATGGGTTAGAGGAAG AACAACAAGCCTTGTCAATTTTGCTTGTCAAATTCTTCATTATTCTTTGCAGAAATCTAT CTAATGTAGAAGAAATTGGGACCTGCTCATACATCAATCATGTCATCACTATGACAACAC TCTATATTCAGCAATTAAAAAGCAAAAAAAAAAGAGAAGGAATTGGCAGATCAGACATCT ATTGAAGAATTTGTGATCCATGCATTGGCATTTTGTGAAAGTTTATATGACCCATATCGG AATTGGAGGCATAGAATTTCAGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCTCTCCTGCCCGCCTGCTTAGCTGCGGGGTGACACGGGGCTTCGCTGGGGAAGGGGG GGGCAGGGAAGCAGATTAGACGGCCTGGCGGCGGCGGCAACACGACCCCCCAATATTTAT GTAATTGCCCAAAGACCACTGATGAATATATGTTGGAATAACTGCTGAAACTGAATCTTA TTAACCAGAAAGCAGACCGTCCTTTGTTTCACTTCTTTTTGTTTTCCCTACTGCTTTGAG TTTTATTGTAACAGCTGAAAAACTTGGAAAATAAAATGAACATACTGTGGTCTTGAACAC AATTTTTTTTTTTGAGGAAAAATTAAAGTGCCAGAGTGAAAGCCAGAATGGCATCCAGAG AGAGACTCTTCGAACTTTGGATGCTTTATTGTGCGAAGAAAGATCCAGATTATCTGAAGC TGTGGTTGGACAATTTTGTTTCTAGCTACGAACAATTCTTAGATGTTGACTTTGAAAAGC TTCCTACCAGGGTAGATGATGTGCCTCCAGGAATATCTCTGCTTCCTGATAATATTCTGC AGGTTCTGAGGAGCCAGCTTCTACAGTGTGTTCAGAAAATGGCAGATGGGTTAGAGGAAG AACAACAAGCCTTGTCAATTTTGCTTGTCAAATTCTTCATTATTCTTTGCAGAAATCTAT CTAATGTAGAAGAAATTGGGACCTGCTCATACATCAATCATGTCATCACTATGACAACAC TCTATATTCAGCAATTAAAAAGCAAAAAAAAAAGAGAAGGAATTGGCAGATCAGACATCT ATTGAAGAATTTGTGATCCATGCATTGGCATTTTGTGAAAGTTTATATGACCCATATCGG AATTGGAGGCATAGAATTTCAGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 115-398, gnl|bosTau2|chr2 (51332214-51332494) | |
| 115-398, gnl|canFam2|chr37 (14895737-14896467) | |
| 115-398, gnl|dasNov1|scaffold_51549 (9984-9329) | |
| 115-398, gnl|echTel1|scaffold_313216 (1389-685) | |
| 115-398, gnl|hg17|chr2 (203706088-203706776) | |
| 115-398, gnl|Hg17|chr2 (203706385-203706664) | |
| 115-398, gnl|mm7|chr1 (60432155-60432791) | |
| 115-398, gnl|Mm7|chr1 (60432398-60432689) | |
| 115-398, gnl|oryCun1|scaffold_156464 (2165-2832) | |
| 115-398, gnl|panTro1|chr13 (93700344-93701033) | |
| 115-398, gnl|rheMac2|chr12 (66887901-66888594) | |
| 115-398, gnl|rn3|chr9 (58862615-58863267) | |
| 489-658, gnl|bosTau2|chr2 (51358104-51358273) | |
| 489-658, gnl|canFam2|chr37 (14924785-14924995) | |
| 489-658, gnl|danRer3|chr24 (31011593-31011403) | |
| 489-658, gnl|echTel1|scaffold_223180 (6039-6255) | |
| 489-658, gnl|fr1|chrUn (244715039-244714832) | |
| 489-658, gnl|galGal2|chr7 (14550312-14550105) | |
| 489-658, gnl|hg17|chr2 (203739995-203740235) | |
| 489-658, gnl|Hg17|chr2 (203740041-203740210) | |
| 489-658, gnl|loxAfr1|scaffold_26429 (26560-26798) | |
| 489-658, gnl|mm7|chr1 (60445909-60446128) | |
| 489-658, gnl|Mm7|chr1 (60445948-60446117) | |
| 489-658, gnl|monDom2|scaffold_39 (21263177-21262957) | |
| 489-658, gnl|oryCun1|scaffold_26499 (2416-2635) | |
| 489-658, gnl|panTro1|chr13 (93734355-93734595) | |
| 489-658, gnl|rheMac2|chr12 (66927685-66927925) | |
| 489-658, gnl|rn3|chr9 (58875560-58875748) | |
| 489-658, gnl|tetNig1|chr3 (3919807-3920009) | |
| 489-658, gnl|xenTro1|scaffold_288 (304180-304409) | |
| 723-864, gnl|bosTau2|chr2 (51368468-51368607) | |
| 723-864, gnl|Hg17|chr2 (203747540-203747683) | |
| 723-864, gnl|Mm7|chr1 (60451784-60451927) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-398, gnl|bosTau2|chr2 (51332214-51332494) | |
| 115-398, gnl|canFam2|chr37 (14895737-14896467) | |
| 115-398, gnl|dasNov1|scaffold_51549 (9984-9329) | |
| 115-398, gnl|echTel1|scaffold_313216 (1389-685) | |
| 115-398, gnl|hg17|chr2 (203706088-203706776) | |
| 115-398, gnl|Hg17|chr2 (203706385-203706664) | |
| 115-398, gnl|mm7|chr1 (60432155-60432791) | |
| 115-398, gnl|Mm7|chr1 (60432398-60432689) | |
| 115-398, gnl|oryCun1|scaffold_156464 (2165-2832) | |
| 115-398, gnl|panTro1|chr13 (93700344-93701033) | |
| 115-398, gnl|rheMac2|chr12 (66887901-66888594) | |
| 115-398, gnl|rn3|chr9 (58862615-58863267) | |
| 489-658, gnl|bosTau2|chr2 (51358104-51358273) | |
| 489-658, gnl|canFam2|chr37 (14924785-14924995) | |
| 489-658, gnl|danRer3|chr24 (31011593-31011403) | |
| 489-658, gnl|echTel1|scaffold_223180 (6039-6255) | |
| 489-658, gnl|fr1|chrUn (244715039-244714832) | |
| 489-658, gnl|galGal2|chr7 (14550312-14550105) | |
| 489-658, gnl|hg17|chr2 (203739995-203740235) | |
| 489-658, gnl|Hg17|chr2 (203740041-203740210) | |
| 489-658, gnl|loxAfr1|scaffold_26429 (26560-26798) | |
| 489-658, gnl|mm7|chr1 (60445909-60446128) | |
| 489-658, gnl|Mm7|chr1 (60445948-60446117) | |
| 489-658, gnl|monDom2|scaffold_39 (21263177-21262957) | |
| 489-658, gnl|oryCun1|scaffold_26499 (2416-2635) | |
| 489-658, gnl|panTro1|chr13 (93734355-93734595) | |
| 489-658, gnl|rheMac2|chr12 (66927685-66927925) | |
| 489-658, gnl|rn3|chr9 (58875560-58875748) | |
| 489-658, gnl|tetNig1|chr3 (3919807-3920009) | |
| 489-658, gnl|xenTro1|scaffold_288 (304180-304409) | |
| 723-864, gnl|bosTau2|chr2 (51368468-51368607) | |
| 723-864, gnl|Hg17|chr2 (203747540-203747683) | |
| 723-864, gnl|Mm7|chr1 (60451784-60451927) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) |