Non-Coding RNA Search

Ss1.1-Spl1-SPL01F120085.5

Sequence:


               
               CTCTCCCGGAACATCCAAGGCAAGACTGGCACCCAGGGCGCGGCAGGAACCATGGAGTCC
TTCAGCTCAAAGAGTCTGGCGCTGCAAGCGGAGAAGAAGCTACTGAGTAAGATGGCAGGT
CGGTCTGTGGTTCACCTCTTCATCGATGAGACGAGCAGCGAAGTGCTAGATGAGCTCTAC
CGTGTGTCCAAAGAGTACACACACAGCAGGCCCCAGGCCCAGAGGGTAATCAAGGACCTG
ATCAAGGTGGCCATCAAGGTGGCTGTGCTGCACCGAAGTGGCTGCTTTAGCCCCAGCGAG
CTGGCCTTGGCTACCCGCTTTCGCCAAAAGCTGCGGCAGGGCGCCATGACGGTGCTCAGC
TTTAGCGAGGTGGACTTCACCTTCGAGGCTGCTGTGCTGGCCAGCCTGCTGACCGAGTGC
CGGGATATGCTGCTGGAGCTGGTGGCACAGCACCTCACACCCAAGTCACACGGCCGCATC
CGCCATGTGTTTGATCACTTCTCCGACCTGGGCCTGCTCACGGCGCTCTATGGGCCTGAC
TTCACCTCGCGCCTTGGCAAGATCTGTGATGGGCTCAGGAAGCTGCTGGATGAGGGGAAA
CTCTGAGGGCCCTGAACCCAGCACATTCCTTCTTGGCGAAATGGCTGACTGAGAAAACAA
CAGATAACGGGCTTTCTAACCCTACTCATCCGCACTAATGCCTTTCAGTCCTCAGGCTTC
AGTCTTTCCCAAGAGTGCTTTTGACTCTGAGACCACCCCACCCCCAAACTGCTGGTGGAG
AAGAAGCAATGCCGAGGGTTGAAGCCTCTCTCCCACTCCAGCCCCAAGACAGGAAACAGA
GCTGCCTGAAAAAGACGAAGTGAAACTTGGATCTCTATTTTTCCCATAAGAGACGTTTCA
AACAGGGAAGCCCCCTCCCCTCAGAACCAGGGGAAGAAGCCATAGCCCATCGAACTCCTC
TGGGGACACTAAAGACAGGGGGCAGGGAGTGGGGGAAGGGGGCCCTTAGAGACATCCTAG
ACCTTCAGCTCTAGGCAGAGCCTGGACAGATACCAGGGGCTCTGCTCTAGAGGGCAGGAA
GAAGGGCTAGGGCAGGGGAGAGTCTCACAGAGGAAATAAAACTATTCAAACATGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCCCGGAACATCCAAGGCAAGACTGGCACCCAGGGCGCGGCAGGAACCATGGAGTCC
TTCAGCTCAAAGAGTCTGGCGCTGCAAGCGGAGAAGAAGCTACTGAGTAAGATGGCAGGT
CGGTCTGTGGTTCACCTCTTCATCGATGAGACGAGCAGCGAAGTGCTAGATGAGCTCTAC
CGTGTGTCCAAAGAGTACACACACAGCAGGCCCCAGGCCCAGAGGGTAATCAAGGACCTG
ATCAAGGTGGCCATCAAGGTGGCTGTGCTGCACCGAAGTGGCTGCTTTAGCCCCAGCGAG
CTGGCCTTGGCTACCCGCTTTCGCCAAAAGCTGCGGCAGGGCGCCATGACGGTGCTCAGC
TTTAGCGAGGTGGACTTCACCTTCGAGGCTGCTGTGCTGGCCAGCCTGCTGACCGAGTGC
CGGGATATGCTGCTGGAGCTGGTGGCACAGCACCTCACACCCAAGTCACACGGCCGCATC
CGCCATGTGTTTGATCACTTCTCCGACCTGGGCCTGCTCACGGCGCTCTATGGGCCTGAC
TTCACCTCGCGCCTTGGCAAGATCTGTGATGGGCTCAGGAAGCTGCTGGATGAGGGGAAA
CTCTGAGGGCCCTGAACCCAGCACATTCCTTCTTGGCGAAATGGCTGACTGAGAAAACAA
CAGATAACGGGCTTTCTAACCCTACTCATCCGCACTAATGCCTTTCAGTCCTCAGGCTTC
AGTCTTTCCCAAGAGTGCTTTTGACTCTGAGACCACCCCACCCCCAAACTGCTGGTGGAG
AAGAAGCAATGCCGAGGGTTGAAGCCTCTCTCCCACTCCAGCCCCAAGACAGGAAACAGA
GCTGCCTGAAAAAGACGAAGTGAAACTTGGATCTCTATTTTTCCCATAAGAGACGTTTCA
AACAGGGAAGCCCCCTCCCCTCAGAACCAGGGGAAGAAGCCATAGCCCATCGAACTCCTC
TGGGGACACTAAAGACAGGGGGCAGGGAGTGGGGGAAGGGGGCCCTTAGAGACATCCTAG
ACCTTCAGCTCTAGGCAGAGCCTGGACAGATACCAGGGGCTCTGCTCTAGAGGGCAGGAA
GAAGGGCTAGGGCAGGGGAGAGTCTCACAGAGGAAATAAAACTATTCAAACATGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55960949|emb|CAI16379.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55960949|emb|CAI16379.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               244-403, - strand, RNAz p=0.903552
               

               
               800-1113, - strand, RNAz p=0.993925

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-403, - strand, RNAz p=0.903552
               

               
               800-1113, - strand, RNAz p=0.993925

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               45-1134, gnl|bosTau2|chr3 (16412330-16411253)
               

               
               45-1134, gnl|Hg17|chr1 (147944240-147945298)
               

               
               45-1134, gnl|Mm7|chr3 (95014506-95013470)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-1134, gnl|bosTau2|chr3 (16412330-16411253)
               

               
               45-1134, gnl|Hg17|chr1 (147944240-147945298)
               

               
               45-1134, gnl|Mm7|chr3 (95014506-95013470)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               nbm (0.0993246)

	244-403, - strand, RNAz p=0.903552
	800-1113, - strand, RNAz p=0.993925

	45-1134, gnl\|bosTau2\|chr3 (16412330-16411253)
	45-1134, gnl\|Hg17\|chr1 (147944240-147945298)
	45-1134, gnl\|Mm7\|chr3 (95014506-95013470)