Ss1.1-Spl1-SPL01F120093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCGCGTGACGTGGCACAGGCGAAGATTTAACGCCAGAGCCGGAGCTGCCCCGCCAGTC GTCGAGCAGGTCCTTGCCCCGCTAATTTCTGTCCCGGGGCTTCGTCCGACACGCCGGCTA GCGAGCTGTCCCTGCCGCGCTCTTTCTGCCTTAGCTCTTCTTCGCCCTCTGACTTTGCCA GGAGCGTGAAAGGAGAAGGCCCGGGGACGCCCCAAGCCCCTTCTGCTCCTGCCCATTGCA AGTGCCATTACCGCCATGGGCCTCACCATCTCCTCCCTCTTCTCCCGCCTCTTCGGCAAG AAGCAGATGCGCATTTTGATGGTTGGATTGGATGCTGCTGGCAAGACGACCATTCTGTAT AAACTGAAGTTAGGGGAGATAGTCACCACCATTCCTACCATTGGTTTTAATGTGGAAACA GTAGAATATAAGAACATTTGTTTCACAGTATGGGATGTTGGTGGTCAAGATAAAATTAGG CCTCTCTGGAGGCATTACTTCCAAAATACCCAGGGTCTTATTTTTGTGGTAGATAGCAAT GATCGTGAAAGAATCCAGGAAGGAGCAGATGAGCTGCAGAAGATGCTTCAGGAAGATGAG TTGCAAGATGCAGTGTTGCTGCTTTTTGCAAACAAACAGGATTTGCCAAATGCTATGGCC ATTAGCGAAATGACAGATAAATTAGGTCTTCAGTCTCTTCGTAACAGAACATGGTATGTT CAAGCCACTTGTGCTACACAAGGAACTGGTCTGTATGAGGGACTTGACTGGCTGTCAAAT GAGCTTTCAAAACGTTAAATGAAACTGGATGTCTAACCAAGGACATGTTTGATAGAATTG GTCTAGGCTTGTTACAACAAAATTAGTTTGCATCTTGGTTATTAAAGAGTATCTGGGACT GGTTTGGGCAGAATATTACAATGTTTAAACTTATTTTGTTGCCAATTATTGTTTACCAAG TATAATGTTGCTGTTAAGCAAAGTATGCTTGGTTTTAAAGAAATTCTCCTTAACTTGGGA AAAAAGTGTCCTCTTAATTTTACTTCCCTTAAGCCTAAATGCCTGGACATAGTGTGACAC CTTTAAATAAATCCATTTTGAATGTTTTTTTGAGCCCACAACAAATAATGTTTTAAAGTT ATCCCCTTGCTACTTTACTGATACCTTTATCATTCCTGGGACAGTCTGCTGATTTAAGAA AAATGTAGCATTCCATTTGTATTTATTTTTCTCCCTTGCCAAAAAGATTTTTTAATACTG CTTGTACAAGCCAGGGAATGCTCCAAAACACTATTCAGATCTCTTGCACTGAGGAACTTA TATTTTCCCCTCATTATTGACTCCTGGCTTCCATCAGCCAAGCTTACCTTGGTGTGGTTT GGATTTGATAGCTAATTAGTCTTATGCTAGTTGCAAAGAGTTCTTATTGAGATGATTTTT AATACTCAGCAGATTGTCTTTCTTTATATTGTATCTTTTTTATGTTGCATGTTGCTTTTG GTATCAGCCTTTTTGCCCAGTATATGATAGTTCTGCTGATGTTTTACTGTTTATTGATAA ACATATCTTCATTAAGAGTTTTTGGAAAACTCATCCAACTCAATGAATAAGTTTTCTTCA TAACCCATTTGGAATTATTCCTAATAAAATTATAAAACATGTAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCGCGTGACGTGGCACAGGCGAAGATTTAACGCCAGAGCCGGAGCTGCCCCGCCAGTC GTCGAGCAGGTCCTTGCCCCGCTAATTTCTGTCCCGGGGCTTCGTCCGACACGCCGGCTA GCGAGCTGTCCCTGCCGCGCTCTTTCTGCCTTAGCTCTTCTTCGCCCTCTGACTTTGCCA GGAGCGTGAAAGGAGAAGGCCCGGGGACGCCCCAAGCCCCTTCTGCTCCTGCCCATTGCA AGTGCCATTACCGCCATGGGCCTCACCATCTCCTCCCTCTTCTCCCGCCTCTTCGGCAAG AAGCAGATGCGCATTTTGATGGTTGGATTGGATGCTGCTGGCAAGACGACCATTCTGTAT AAACTGAAGTTAGGGGAGATAGTCACCACCATTCCTACCATTGGTTTTAATGTGGAAACA GTAGAATATAAGAACATTTGTTTCACAGTATGGGATGTTGGTGGTCAAGATAAAATTAGG CCTCTCTGGAGGCATTACTTCCAAAATACCCAGGGTCTTATTTTTGTGGTAGATAGCAAT GATCGTGAAAGAATCCAGGAAGGAGCAGATGAGCTGCAGAAGATGCTTCAGGAAGATGAG TTGCAAGATGCAGTGTTGCTGCTTTTTGCAAACAAACAGGATTTGCCAAATGCTATGGCC ATTAGCGAAATGACAGATAAATTAGGTCTTCAGTCTCTTCGTAACAGAACATGGTATGTT CAAGCCACTTGTGCTACACAAGGAACTGGTCTGTATGAGGGACTTGACTGGCTGTCAAAT GAGCTTTCAAAACGTTAAATGAAACTGGATGTCTAACCAAGGACATGTTTGATAGAATTG GTCTAGGCTTGTTACAACAAAATTAGTTTGCATCTTGGTTATTAAAGAGTATCTGGGACT GGTTTGGGCAGAATATTACAATGTTTAAACTTATTTTGTTGCCAATTATTGTTTACCAAG TATAATGTTGCTGTTAAGCAAAGTATGCTTGGTTTTAAAGAAATTCTCCTTAACTTGGGA AAAAAGTGTCCTCTTAATTTTACTTCCCTTAAGCCTAAATGCCTGGACATAGTGTGACAC CTTTAAATAAATCCATTTTGAATGTTTTTTTGAGCCCACAACAAATAATGTTTTAAAGTT ATCCCCTTGCTACTTTACTGATACCTTTATCATTCCTGGGACAGTCTGCTGATTTAAGAA AAATGTAGCATTCCATTTGTATTTATTTTTCTCCCTTGCCAAAAAGATTTTTTAATACTG CTTGTACAAGCCAGGGAATGCTCCAAAACACTATTCAGATCTCTTGCACTGAGGAACTTA TATTTTCCCCTCATTATTGACTCCTGGCTTCCATCAGCCAAGCTTACCTTGGTGTGGTTT GGATTTGATAGCTAATTAGTCTTATGCTAGTTGCAAAGAGTTCTTATTGAGATGATTTTT AATACTCAGCAGATTGTCTTTCTTTATATTGTATCTTTTTTATGTTGCATGTTGCTTTTG GTATCAGCCTTTTTGCCCAGTATATGATAGTTCTGCTGATGTTTTACTGTTTATTGATAA ACATATCTTCATTAAGAGTTTTTGGAAAACTCATCCAACTCAATGAATAAGTTTTCTTCA TAACCCATTTGGAATTATTCCTAATAAAATTATAAAACATGTAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 194-313, - strand, RNAz p=0.545917 | |
| 871-1062, - strand, RNAz p=0.940956 | |
| 1251-1401, - strand, RNAz p=0.935508 | |
| 1442-1596, + strand, RNAz p=0.655308 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-313, - strand, RNAz p=0.545917 | |
| 871-1062, - strand, RNAz p=0.940956 | |
| 1251-1401, - strand, RNAz p=0.935508 | |
| 1442-1596, + strand, RNAz p=0.655308 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-325, gnl|bosTau2|chr22 (33473367-33473684) | |
| 1-325, gnl|Hg17|chr3 (57558167-57557838) | |
| 1-325, gnl|Mm7|chr14 (24028955-24029256) | |
| 403-516, gnl|bosTau2|chr19 (42424034-42423921) | |
| 403-516, gnl|canFam2|chr9 (12985084-12985233) | |
| 403-516, gnl|danRer3|chr23 (39748792-39748934) | |
| 403-516, gnl|dasNov1|scaffold_33331 (7890-8036) | |
| 403-516, gnl|echTel1|scaffold_294115 (124467-124585) | |
| 403-516, gnl|fr1|chrUn (126334619-126334748) | |
| 403-516, gnl|hg17|chr17 (41785928-41786075) | |
| 403-516, gnl|Hg17|chr17 (41786053-41785940) | |
| 403-516, gnl|loxAfr1|scaffold_63132 (5589-5459) | |
| 403-516, gnl|mm7|chr11 (104082114-104081974) | |
| 403-516, gnl|Mm7|chr11 (104081993-104082106) | |
| 403-516, gnl|oryCun1|scaffold_176930 (50736-50593) | |
| 403-516, gnl|panTro1|chr19 (63341123-63340976) | |
| 403-516, gnl|rheMac2|chr16 (56253378-56253231) | |
| 403-516, gnl|rn3|chr10 (93136256-93136116) | |
| 403-516, gnl|tetNig1|chr2 (1759598-1759453) | |
| 403-516, gnl|xenTro1|scaffold_133 (1526316-1526171) | |
| 585-711, gnl|bosTau2|chr22 (33489998-33490124) | |
| 585-711, gnl|canFam2|chr20 (35866185-35866048) | |
| 585-711, gnl|danRer3|chrNA (103214637-103214781) | |
| 585-711, gnl|dasNov1|scaffold_232868 (686-562) | |
| 585-711, gnl|echTel1|scaffold_315904 (8027-8166) | |
| 585-711, gnl|fr1|chrUn (266797650-266797522) | |
| 585-711, gnl|galGal2|chr12 (8783395-8783532) | |
| 585-711, gnl|hg17|chr3 (57536316-57536453) | |
| 585-711, gnl|Hg17|chr3 (57536441-57536315) | |
| 585-711, gnl|loxAfr1|scaffold_70620 (5095-5232) | |
| 585-711, gnl|mm7|chr14 (24044730-24044593) | |
| 585-711, gnl|Mm7|chr14 (24044603-24044729) | |
| 585-711, gnl|monDom2|scaffold_5 (2508407-2508544) | |
| 585-711, gnl|oryCun1|scaffold_213349 (37509-37646) | |
| 585-711, gnl|panTro1|chr2 (59258679-59258816) | |
| 585-711, gnl|rheMac2|chr2 (78815412-78815275) | |
| 585-711, gnl|rn3|chr16 (1969202-1969065) | |
| 585-711, gnl|tetNig1|chrUn_random (19105415-19105306) | |
| 585-711, gnl|xenTro1|scaffold_80 (1897252-1897389) | |
| 712-1664, gnl|bosTau2|chr22 (33491990-33492956) | |
| 712-1664, gnl|Hg17|chr3 (57533065-57532130) | |
| 712-1664, gnl|Mm7|chr14 (24046663-24047613) | |
| 1421-1656, gnl|bosTau2|chr17 (6614071-6614299) | |
| 1421-1656, gnl|Hg17|chr4 (147726452-147726674) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-325, gnl|bosTau2|chr22 (33473367-33473684) | |
| 1-325, gnl|Hg17|chr3 (57558167-57557838) | |
| 1-325, gnl|Mm7|chr14 (24028955-24029256) | |
| 403-516, gnl|bosTau2|chr19 (42424034-42423921) | |
| 403-516, gnl|canFam2|chr9 (12985084-12985233) | |
| 403-516, gnl|danRer3|chr23 (39748792-39748934) | |
| 403-516, gnl|dasNov1|scaffold_33331 (7890-8036) | |
| 403-516, gnl|echTel1|scaffold_294115 (124467-124585) | |
| 403-516, gnl|fr1|chrUn (126334619-126334748) | |
| 403-516, gnl|hg17|chr17 (41785928-41786075) | |
| 403-516, gnl|Hg17|chr17 (41786053-41785940) | |
| 403-516, gnl|loxAfr1|scaffold_63132 (5589-5459) | |
| 403-516, gnl|mm7|chr11 (104082114-104081974) | |
| 403-516, gnl|Mm7|chr11 (104081993-104082106) | |
| 403-516, gnl|oryCun1|scaffold_176930 (50736-50593) | |
| 403-516, gnl|panTro1|chr19 (63341123-63340976) | |
| 403-516, gnl|rheMac2|chr16 (56253378-56253231) | |
| 403-516, gnl|rn3|chr10 (93136256-93136116) | |
| 403-516, gnl|tetNig1|chr2 (1759598-1759453) | |
| 403-516, gnl|xenTro1|scaffold_133 (1526316-1526171) | |
| 585-711, gnl|bosTau2|chr22 (33489998-33490124) | |
| 585-711, gnl|canFam2|chr20 (35866185-35866048) | |
| 585-711, gnl|danRer3|chrNA (103214637-103214781) | |
| 585-711, gnl|dasNov1|scaffold_232868 (686-562) | |
| 585-711, gnl|echTel1|scaffold_315904 (8027-8166) | |
| 585-711, gnl|fr1|chrUn (266797650-266797522) | |
| 585-711, gnl|galGal2|chr12 (8783395-8783532) | |
| 585-711, gnl|hg17|chr3 (57536316-57536453) | |
| 585-711, gnl|Hg17|chr3 (57536441-57536315) | |
| 585-711, gnl|loxAfr1|scaffold_70620 (5095-5232) | |
| 585-711, gnl|mm7|chr14 (24044730-24044593) | |
| 585-711, gnl|Mm7|chr14 (24044603-24044729) | |
| 585-711, gnl|monDom2|scaffold_5 (2508407-2508544) | |
| 585-711, gnl|oryCun1|scaffold_213349 (37509-37646) | |
| 585-711, gnl|panTro1|chr2 (59258679-59258816) | |
| 585-711, gnl|rheMac2|chr2 (78815412-78815275) | |
| 585-711, gnl|rn3|chr16 (1969202-1969065) | |
| 585-711, gnl|tetNig1|chrUn_random (19105415-19105306) | |
| 585-711, gnl|xenTro1|scaffold_80 (1897252-1897389) | |
| 712-1664, gnl|bosTau2|chr22 (33491990-33492956) | |
| 712-1664, gnl|Hg17|chr3 (57533065-57532130) | |
| 712-1664, gnl|Mm7|chr14 (24046663-24047613) | |
| 1421-1656, gnl|bosTau2|chr17 (6614071-6614299) | |
| 1421-1656, gnl|Hg17|chr4 (147726452-147726674) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| cty (1.24896) | |
| nlu (1.15009) | |
| tes (0.831255) | |
| cbl (0.803582) | |
| pla (0.802032) | |
| eru (0.720288) | |
| kid (0.648677) | |
| csp (0.644745) | |
| sug (0.636456) | |
| fat (0.58971) | |
| spl (0.572738) | |
| bla (0.497389) | |
| ebs (0.473205) | |
| hyp (0.42851) | |
| amn (0.417711) | |
| hea (0.408998) | |
| ute (0.398353) | |
| eje (0.395335) | |
| ldo (0.38801) | |
| elu (0.385356) | |
| sin (0.349895) | |
| duo (0.345602) | |
| nje (0.33184) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lun (0.300978) | |
| pty (0.285429) | |
| fce (0.271592) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| jca (0.22792) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (1.24896) | |
| nlu (1.15009) | |
| tes (0.831255) | |
| cbl (0.803582) | |
| pla (0.802032) | |
| eru (0.720288) | |
| kid (0.648677) | |
| csp (0.644745) | |
| sug (0.636456) | |
| fat (0.58971) | |
| spl (0.572738) | |
| bla (0.497389) | |
| ebs (0.473205) | |
| hyp (0.42851) | |
| amn (0.417711) | |
| hea (0.408998) | |
| ute (0.398353) | |
| eje (0.395335) | |
| ldo (0.38801) | |
| elu (0.385356) | |
| sin (0.349895) | |
| duo (0.345602) | |
| nje (0.33184) | |
| sme (0.305437) | |
| cag (0.302389) | |
| lun (0.300978) | |
| pty (0.285429) | |
| fce (0.271592) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| jca (0.22792) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) |