Non-Coding RNA Search

Ss1.1-Spl1-SPL01G010044.5

Sequence:


               
               CGCGGCGGCGCGGGGCGGCTGCCATGGCCGCGGCGTCCAGATATATGTTTGCCATCATGG
ATCGGTTTGGAGATATATCAGAAGGTGAAGTGGACCATTCTTTCTTTGACAGTGACTTTG
AAGAGGCAAAGAAATGTGAAAGTAACTCAGTTTTTGACAAGCAAAATGATGACCCTAAAG
AGGAGATAGATAAGGATACAGAAAATGAAGACTTAAGAGTTGGAATACAGAGAAGGAAAA
GTGATCTTGAGAAGGGAACAGAAAGAAACGAGACAATTCCTACAGAACAGCACCCTGTAG
AAAATGATAATATGCAAACTACAAATTCTTTGTCATTGACCACTTCTTCAAGATCGAAAT
TGTGTGATGCTCCAATAGAACATAAAATCCACATGCCCATTCCAAGTAGCATTCCCCAAG
TTGTTAAAGAAGATGAACATGATTACTATACAGATGGGGAGGAAAGCAGTGATGATGAGA
AAAAGCCTCATGTCAGGTCCAGGTCAGTTAAACCATCTCATAACTTTAAAAAAAGTATAA
GTAAAAGGTATTCTAAAAGAAGTTCCTGTTCCTCTTTGTCCTCCTCGTCTTCAAGTTCAG
ACTCTTCAGACACTGGGTCTGATGTCTGTATATCTGATTCATCTCCATCATTAAAGAAGC
GTGAATCTGGTGTAACCCCCTTGTCAGCCAAACAGAAATACAGACCAGCAGAAAAATCGG
CAGGAGCACAACCTTCTAGCACTAAACCAAAAGTTGGTGACTACACCGAGGAATCTGAAG
ACACTGTGACAGATGTCACTCCTTTATCAACTCCAGACATTAGCCCTGTTCAGTCTTTTG
AACTGGGGGCATCAAGCAATCAAAAAGTGAAAGTTAAAAGGCAAGAAAACGTGGGTCAGG
AAGTATATGAAAATGTTGAGGATTTTAAAGATAATTCAAAATCTTTGAAATCAGTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCGGCGCGGGGCGGCTGCCATGGCCGCGGCGTCCAGATATATGTTTGCCATCATGG
ATCGGTTTGGAGATATATCAGAAGGTGAAGTGGACCATTCTTTCTTTGACAGTGACTTTG
AAGAGGCAAAGAAATGTGAAAGTAACTCAGTTTTTGACAAGCAAAATGATGACCCTAAAG
AGGAGATAGATAAGGATACAGAAAATGAAGACTTAAGAGTTGGAATACAGAGAAGGAAAA
GTGATCTTGAGAAGGGAACAGAAAGAAACGAGACAATTCCTACAGAACAGCACCCTGTAG
AAAATGATAATATGCAAACTACAAATTCTTTGTCATTGACCACTTCTTCAAGATCGAAAT
TGTGTGATGCTCCAATAGAACATAAAATCCACATGCCCATTCCAAGTAGCATTCCCCAAG
TTGTTAAAGAAGATGAACATGATTACTATACAGATGGGGAGGAAAGCAGTGATGATGAGA
AAAAGCCTCATGTCAGGTCCAGGTCAGTTAAACCATCTCATAACTTTAAAAAAAGTATAA
GTAAAAGGTATTCTAAAAGAAGTTCCTGTTCCTCTTTGTCCTCCTCGTCTTCAAGTTCAG
ACTCTTCAGACACTGGGTCTGATGTCTGTATATCTGATTCATCTCCATCATTAAAGAAGC
GTGAATCTGGTGTAACCCCCTTGTCAGCCAAACAGAAATACAGACCAGCAGAAAAATCGG
CAGGAGCACAACCTTCTAGCACTAAACCAAAAGTTGGTGACTACACCGAGGAATCTGAAG
ACACTGTGACAGATGTCACTCCTTTATCAACTCCAGACATTAGCCCTGTTCAGTCTTTTG
AACTGGGGGCATCAAGCAATCAAAAAGTGAAAGTTAAAAGGCAAGAAAACGTGGGTCAGG
AAGTATATGAAAATGTTGAGGATTTTAAAGATAATTCAAAATCTTTGAAATCAGTCAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55623578|ref|XP_517557.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623578|ref|XP_517557.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               38-960, gnl|bosTau2|chr27 (9663317-9664248)
               

               
               38-960, gnl|Hg17|chr4 (186487518-186486572)
               

               
               38-960, gnl|Mm7|chr8 (44947419-44948401)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-960, gnl|bosTau2|chr27 (9663317-9664248)
               

               
               38-960, gnl|Hg17|chr4 (186487518-186486572)
               

               
               38-960, gnl|Mm7|chr8 (44947419-44948401)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.415628)
               

               
               hea (0.204499)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               hea (0.204499)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	38-960, gnl\|bosTau2\|chr27 (9663317-9664248)
	38-960, gnl\|Hg17\|chr4 (186487518-186486572)
	38-960, gnl\|Mm7\|chr8 (44947419-44948401)

	tes (0.415628)
	hea (0.204499)
	ssp (0.13552)
	bla (0.124347)
	spc (0.113366)