Ss1.1-Spl1-SPL01G020058.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TGGTGATGCTGGAACAAACATGGCTGCCCCGGCGCCCGTCGGCCTCTCGGGCTCACGCAG TCCTCTGCTGGCCGCCGGACTTCGGCTGCTCCCGCTGCTGGGGCTGCTGCAGCTGCTGGC CGAGCCCGGCCTGGGCCGCGTCCACCACCTGGCGCTCAAGGACGACGTGAGGCATAAGGT TCATCTGAACACTTTTGGATTCTTCAAGAATGGGTACATGATGGTGAATGTCAGTAGCCT TTCAGTGAATGAGCCTGAAGGAGCCACAGACAAGGACGCAACTATTGGATTCAGCCTAGA CCGTACAAAGAATGATGGATTTTCTTCTTACCTGGATGAAGATGTGGATTATTGTATTTT AAAGAAACAGTTCACCTCTGTCACCCTTCTAATCCTAAACATCTCCAGAAGTGAAGTGAA AGTAAAATCTCCCCCAGAAGCCGGTACCCAGTTACCAAAGATCATCTTCAACAAGGACGA GAAGGTCCTCGGTCAGAGCCCGGAGCCTGCCGTTAGCCCTGTTTCAGCAGGCAGCCAGAC GCAGAAAAAGCAAGACAGTGGAAAGTCCAAAAGGAGTACAGTGGATTCAAAGGCAACAGG CGAGAAATCCTTTTCCGTTCGTAATAATGATGGGGCAGTTTCATTTCAGTTTTTCTTTAA CATCAGCACTGATGACCAAGAAGGCCTGTACAGTCTTTATTTTCATAAATGCCCTGGAAG CAAAATAAGGTCGGAATAATGATTTAGATACGCCGCCTGTCCAGTCACCACAGAGAAGAA TCCTGACAGCTACCTCTCAGCGGGAGAGATTCCTCTCCCTAAATTATACATTTCCATGGC CTTTTTCTTTTTTCTCTCTGGGACTGTCTGGATCCACATCCTTCGCAAACGACGGTAAAT TGTCATCTCCTTGAGCGCCTCACCCAGGAGTGCTTCGGGGTTTGTGTACTTTGACCTTCT GCTGTCTTTTGAGCCCGGAGGGTCCGGCACCGGCAACCTCCTTCTCTTCAAAGGGCCTCT CCTCCCAGACAAAGGGAGGCTGTCCAGGAGCTTTGCCTGTGGGAGGCCTTTGCATGCCTC GGTGTTTGTTCACTTCCCATCGCTTTGTTTAAAGAGCAAATCCAAGTATTTCAGTAATAC ACAAGCAAAATGAAGTATATAGGCAAAGTGTTTCCACAGCGAAGACACCACCATCCAGGA CTCAGAGTGAAGGACAACTCACGTTTCAGGGGCATTCAGTCTTAGCAGAAGAGTGACAGT GGCCCAGTGCCTGGGTGAGAGCGTCGGTTCTTAGGTGTATTGTAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TGGTGATGCTGGAACAAACATGGCTGCCCCGGCGCCCGTCGGCCTCTCGGGCTCACGCAG TCCTCTGCTGGCCGCCGGACTTCGGCTGCTCCCGCTGCTGGGGCTGCTGCAGCTGCTGGC CGAGCCCGGCCTGGGCCGCGTCCACCACCTGGCGCTCAAGGACGACGTGAGGCATAAGGT TCATCTGAACACTTTTGGATTCTTCAAGAATGGGTACATGATGGTGAATGTCAGTAGCCT TTCAGTGAATGAGCCTGAAGGAGCCACAGACAAGGACGCAACTATTGGATTCAGCCTAGA CCGTACAAAGAATGATGGATTTTCTTCTTACCTGGATGAAGATGTGGATTATTGTATTTT AAAGAAACAGTTCACCTCTGTCACCCTTCTAATCCTAAACATCTCCAGAAGTGAAGTGAA AGTAAAATCTCCCCCAGAAGCCGGTACCCAGTTACCAAAGATCATCTTCAACAAGGACGA GAAGGTCCTCGGTCAGAGCCCGGAGCCTGCCGTTAGCCCTGTTTCAGCAGGCAGCCAGAC GCAGAAAAAGCAAGACAGTGGAAAGTCCAAAAGGAGTACAGTGGATTCAAAGGCAACAGG CGAGAAATCCTTTTCCGTTCGTAATAATGATGGGGCAGTTTCATTTCAGTTTTTCTTTAA CATCAGCACTGATGACCAAGAAGGCCTGTACAGTCTTTATTTTCATAAATGCCCTGGAAG CAAAATAAGGTCGGAATAATGATTTAGATACGCCGCCTGTCCAGTCACCACAGAGAAGAA TCCTGACAGCTACCTCTCAGCGGGAGAGATTCCTCTCCCTAAATTATACATTTCCATGGC CTTTTTCTTTTTTCTCTCTGGGACTGTCTGGATCCACATCCTTCGCAAACGACGGTAAAT TGTCATCTCCTTGAGCGCCTCACCCAGGAGTGCTTCGGGGTTTGTGTACTTTGACCTTCT GCTGTCTTTTGAGCCCGGAGGGTCCGGCACCGGCAACCTCCTTCTCTTCAAAGGGCCTCT CCTCCCAGACAAAGGGAGGCTGTCCAGGAGCTTTGCCTGTGGGAGGCCTTTGCATGCCTC GGTGTTTGTTCACTTCCCATCGCTTTGTTTAAAGAGCAAATCCAAGTATTTCAGTAATAC ACAAGCAAAATGAAGTATATAGGCAAAGTGTTTCCACAGCGAAGACACCACCATCCAGGA CTCAGAGTGAAGGACAACTCACGTTTCAGGGGCATTCAGTCTTAGCAGAAGAGTGACAGT GGCCCAGTGCCTGGGTGAGAGCGTCGGTTCTTAGGTGTATTGTAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
40-159, + strand, RNAz p=0.668365 | |
769-887, - strand, RNAz p=0.832978 | |
964-1180, + strand, RNAz p=0.996333 |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
40-159, + strand, RNAz p=0.668365 | |
769-887, - strand, RNAz p=0.832978 | |
964-1180, + strand, RNAz p=0.996333 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
5' of AB046844, + |
Aligned organism(s): 28 entry(ies) | More info |
Aligned organism(s): 28 entry(ies) | Help | Less info |
1-161, gnl|bosTau2|chr11 (80632548-80632708) | |
1-161, gnl|canFam2|chr9 (57154345-57154124) | |
1-161, gnl|echTel1|scaffold_157960 (3343-3136) | |
1-161, gnl|hg17|chr9 (129895729-129895941) | |
1-161, gnl|Hg17|chr9 (129895747-129895907) | |
1-161, gnl|mm7|chr2 (31159633-31159833) | |
1-161, gnl|Mm7|chr2 (31159651-31159793) | |
1-161, gnl|monDom2|scaffold_51 (5132237-5132451) | |
1-161, gnl|oryCun1|scaffold_173959 (53254-53054) | |
1-161, gnl|panTro1|chr11 (114764244-114764456) | |
1-161, gnl|rheMac2|chr15 (8776596-8776384) | |
1-161, gnl|rn3|chr3 (10108059-10108259) | |
415-554, gnl|bosTau2|chr11 (80645846-80645985) | |
415-554, gnl|canFam2|chr9 (57123499-57123201) | |
415-554, gnl|dasNov1|scaffold_9750 (1792-2099) | |
415-554, gnl|echTel1|scaffold_298772 (627-322) | |
415-554, gnl|hg17|chr9 (129921435-129921747) | |
415-554, gnl|Hg17|chr9 (129921463-129921602) | |
415-554, gnl|loxAfr1|scaffold_26900 (20800-20508) | |
415-554, gnl|mm7|chr2 (31179227-31179476) | |
415-554, gnl|Mm7|chr2 (31179253-31179392) | |
415-554, gnl|oryCun1|scaffold_207127 (44413-44689) | |
415-554, gnl|panTro1|chr11 (114791434-114791746) | |
415-554, gnl|rheMac2|chr15 (8752755-8752440) | |
415-554, gnl|rn3|chr3 (10127433-10127680) | |
769-1180, gnl|bosTau2|chr11 (80652346-80652761) | |
769-1180, gnl|Hg17|chr9 (129934089-129934443) | |
769-1180, gnl|Mm7|chr2 (31185573-31185915) |
Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-161, gnl|bosTau2|chr11 (80632548-80632708) | |
1-161, gnl|canFam2|chr9 (57154345-57154124) | |
1-161, gnl|echTel1|scaffold_157960 (3343-3136) | |
1-161, gnl|hg17|chr9 (129895729-129895941) | |
1-161, gnl|Hg17|chr9 (129895747-129895907) | |
1-161, gnl|mm7|chr2 (31159633-31159833) | |
1-161, gnl|Mm7|chr2 (31159651-31159793) | |
1-161, gnl|monDom2|scaffold_51 (5132237-5132451) | |
1-161, gnl|oryCun1|scaffold_173959 (53254-53054) | |
1-161, gnl|panTro1|chr11 (114764244-114764456) | |
1-161, gnl|rheMac2|chr15 (8776596-8776384) | |
1-161, gnl|rn3|chr3 (10108059-10108259) | |
415-554, gnl|bosTau2|chr11 (80645846-80645985) | |
415-554, gnl|canFam2|chr9 (57123499-57123201) | |
415-554, gnl|dasNov1|scaffold_9750 (1792-2099) | |
415-554, gnl|echTel1|scaffold_298772 (627-322) | |
415-554, gnl|hg17|chr9 (129921435-129921747) | |
415-554, gnl|Hg17|chr9 (129921463-129921602) | |
415-554, gnl|loxAfr1|scaffold_26900 (20800-20508) | |
415-554, gnl|mm7|chr2 (31179227-31179476) | |
415-554, gnl|Mm7|chr2 (31179253-31179392) | |
415-554, gnl|oryCun1|scaffold_207127 (44413-44689) | |
415-554, gnl|panTro1|chr11 (114791434-114791746) | |
415-554, gnl|rheMac2|chr15 (8752755-8752440) | |
415-554, gnl|rn3|chr3 (10127433-10127680) | |
769-1180, gnl|bosTau2|chr11 (80652346-80652761) | |
769-1180, gnl|Hg17|chr9 (129934089-129934443) | |
769-1180, gnl|Mm7|chr2 (31185573-31185915) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
csp (0.322373) | |
cag (0.151194) | |
cly (0.120642) |