Ss1.1-Spl1-SPL01G020059.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGTGGCGCGCGCGGCGTGTGGCTTCCACCGTCTGCTCAAGTCTCAGCTCAGTGCACTG GCCGGTGACTCGTTGGTCTGGAGCCCTCACCCACCGGGTCCTTGACCCCGCGCCCGTCGG GCACCTGATTCCCGGCATGCCCCGCGCCCGAAAGGGCAACGCGCCCCGCAGAGGCGGCCA GCGCCGCGGAGGAGGTGCCCGGAGCAGTACCCAAGCTGACTCAGGTTCCAGCGAGGATGA GGCAGCCAGTGAGGCTCGCAGCACCACCAGTGAATGCCCCAGCCTCTTGAGCACCGCTGC AGAGGAAGGCCTTGGGGGGGATGCCGTGGATGAGCAGGGTCAGCAGGAAGACCTTGAGGA GAAGTTGAAGGAGTATGTGGACTGCCTCACAGACAAGAGTGCCAAGACCCGGCAGGGTGC TCTTGAGAGCCTGCGCTTGGCCCTGGCAGCTCACCTACTTCCCGACTTCTTGCTGGAACG CTGCCTCACACTGGCTGATGCCTTGGAAAAGTGCCTCAAGAAAGGGAAGGGCGAGGAACA GGCCCTGGCCGCTGCCGTGCTAGGTCTGCTGTGTGTGCAGCTGGGCCCTGGACCCAAGGG AGAGGAGTTATTCCACAGCCTGCAGCCCCTGCTGGTCTCTGTGCTCACTGATGGCACAGC TAGCCCTGCTGCCCGGCTCCACTGCGCTTCTGCTCTTGGCTTGGGCTGCTACGTGGCTGC TGCCGATGTACAGGACCTGGTCTCTTGCCTCACCTGTCTGGAAGGTGTTTTCAGCCGGTC CTGTGGTGTGGGTGGCGCCACAGCTCCTATGGTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGTGGCGCGCGCGGCGTGTGGCTTCCACCGTCTGCTCAAGTCTCAGCTCAGTGCACTG GCCGGTGACTCGTTGGTCTGGAGCCCTCACCCACCGGGTCCTTGACCCCGCGCCCGTCGG GCACCTGATTCCCGGCATGCCCCGCGCCCGAAAGGGCAACGCGCCCCGCAGAGGCGGCCA GCGCCGCGGAGGAGGTGCCCGGAGCAGTACCCAAGCTGACTCAGGTTCCAGCGAGGATGA GGCAGCCAGTGAGGCTCGCAGCACCACCAGTGAATGCCCCAGCCTCTTGAGCACCGCTGC AGAGGAAGGCCTTGGGGGGGATGCCGTGGATGAGCAGGGTCAGCAGGAAGACCTTGAGGA GAAGTTGAAGGAGTATGTGGACTGCCTCACAGACAAGAGTGCCAAGACCCGGCAGGGTGC TCTTGAGAGCCTGCGCTTGGCCCTGGCAGCTCACCTACTTCCCGACTTCTTGCTGGAACG CTGCCTCACACTGGCTGATGCCTTGGAAAAGTGCCTCAAGAAAGGGAAGGGCGAGGAACA GGCCCTGGCCGCTGCCGTGCTAGGTCTGCTGTGTGTGCAGCTGGGCCCTGGACCCAAGGG AGAGGAGTTATTCCACAGCCTGCAGCCCCTGCTGGTCTCTGTGCTCACTGATGGCACAGC TAGCCCTGCTGCCCGGCTCCACTGCGCTTCTGCTCTTGGCTTGGGCTGCTACGTGGCTGC TGCCGATGTACAGGACCTGGTCTCTTGCCTCACCTGTCTGGAAGGTGTTTTCAGCCGGTC CTGTGGTGTGGGTGGCGCCACAGCTCCTATGGTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 563-681, + strand, RNAz p=0.894221 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 563-681, + strand, RNAz p=0.894221 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-196, gnl|bosTau2|chr22 (38558803-38558609) | |
| 1-196, gnl|canFam2|chr20 (42048477-42048101) | |
| 1-196, gnl|echTel1|scaffold_315641 (39965-40314) | |
| 1-196, gnl|hg17|chr3 (50304605-50304957) | |
| 1-196, gnl|Hg17|chr3 (50304843-50304650) | |
| 1-196, gnl|loxAfr1|scaffold_37622 (2016-1670) | |
| 1-196, gnl|mm7|chr9 (107317439-107317078) | |
| 1-196, gnl|Mm7|chr9 (107317190-107317396) | |
| 1-196, gnl|monDom2|scaffold_5 (74051390-74050981) | |
| 1-196, gnl|oryCun1|scaffold_114346 (5244-4881) | |
| 1-196, gnl|panTro1|chr2 (51884825-51885177) | |
| 1-196, gnl|rheMac2|chr2 (86126767-86126416) | |
| 1-196, gnl|rn3|chr8 (112854517-112854157) | |
| 523-682, gnl|bosTau2|chr22 (38534412-38534253) | |
| 523-682, gnl|canFam2|chr20 (42051327-42051210) | |
| 523-682, gnl|danRer3|chr1 (42859937-42859819) | |
| 523-682, gnl|echTel1|scaffold_315641 (37593-37710) | |
| 523-682, gnl|fr1|chrUn (77235956-77236068) | |
| 523-682, gnl|hg17|chr3 (50302353-50302470) | |
| 523-682, gnl|Hg17|chr3 (50302523-50302364) | |
| 523-682, gnl|loxAfr1|scaffold_37622 (4688-4571) | |
| 523-682, gnl|mm7|chr9 (107320123-107320006) | |
| 523-682, gnl|Mm7|chr9 (107319951-107320110) | |
| 523-682, gnl|monDom2|scaffold_5 (74058630-74058514) | |
| 523-682, gnl|oryCun1|scaffold_114346 (7758-7641) | |
| 523-682, gnl|panTro1|chr2 (51882575-51882692) | |
| 523-682, gnl|rheMac2|chr2 (86129028-86128911) | |
| 523-682, gnl|rn3|chr8 (112857221-112857104) | |
| 523-682, gnl|tetNig1|chrUn_random (111114935-111115047) | |
| 523-682, gnl|xenTro1|scaffold_189 (772784-772672) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-196, gnl|bosTau2|chr22 (38558803-38558609) | |
| 1-196, gnl|canFam2|chr20 (42048477-42048101) | |
| 1-196, gnl|echTel1|scaffold_315641 (39965-40314) | |
| 1-196, gnl|hg17|chr3 (50304605-50304957) | |
| 1-196, gnl|Hg17|chr3 (50304843-50304650) | |
| 1-196, gnl|loxAfr1|scaffold_37622 (2016-1670) | |
| 1-196, gnl|mm7|chr9 (107317439-107317078) | |
| 1-196, gnl|Mm7|chr9 (107317190-107317396) | |
| 1-196, gnl|monDom2|scaffold_5 (74051390-74050981) | |
| 1-196, gnl|oryCun1|scaffold_114346 (5244-4881) | |
| 1-196, gnl|panTro1|chr2 (51884825-51885177) | |
| 1-196, gnl|rheMac2|chr2 (86126767-86126416) | |
| 1-196, gnl|rn3|chr8 (112854517-112854157) | |
| 523-682, gnl|bosTau2|chr22 (38534412-38534253) | |
| 523-682, gnl|canFam2|chr20 (42051327-42051210) | |
| 523-682, gnl|danRer3|chr1 (42859937-42859819) | |
| 523-682, gnl|echTel1|scaffold_315641 (37593-37710) | |
| 523-682, gnl|fr1|chrUn (77235956-77236068) | |
| 523-682, gnl|hg17|chr3 (50302353-50302470) | |
| 523-682, gnl|Hg17|chr3 (50302523-50302364) | |
| 523-682, gnl|loxAfr1|scaffold_37622 (4688-4571) | |
| 523-682, gnl|mm7|chr9 (107320123-107320006) | |
| 523-682, gnl|Mm7|chr9 (107319951-107320110) | |
| 523-682, gnl|monDom2|scaffold_5 (74058630-74058514) | |
| 523-682, gnl|oryCun1|scaffold_114346 (7758-7641) | |
| 523-682, gnl|panTro1|chr2 (51882575-51882692) | |
| 523-682, gnl|rheMac2|chr2 (86129028-86128911) | |
| 523-682, gnl|rn3|chr8 (112857221-112857104) | |
| 523-682, gnl|tetNig1|chrUn_random (111114935-111115047) | |
| 523-682, gnl|xenTro1|scaffold_189 (772784-772672) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| col (0.195008) | |
| ese (0.126502) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| ese (0.126502) | |
| med (0.116252) | |
| eje (0.0988338) |