Ss1.1-Spl1-SPL01G040082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTTCAGGGCGAAGCTGCCATGCGTTCAGGGGGCCGCGGGCGGCCCCGGCTACGGCTTG GGGAACGCGGCCTTTTGGAGCCACCCTCACCGCCCAAGCGCCGCCTGCTACCGCGGGCGC AGCTGTTGCCCCTGCTGTTGCTGGCGCTGGCGGTGGCCTCGGTGTTCTATACCATTTGGA GCGGCTGGCACCGCCAGACTGAGGAGCTGCCTCTGGGCCGGGAGATGCGGGGTCCGGGGC TCGGAAGCCTCCCCGAAGCCGGGCTTCGGAGGGTGGTGGGGCGACTGGACCCGCACCGTC TCTGGCACACTTATCTGCGCCCCCTGCTGGTTGTGCGGACCCCGGGCAGTCCGGGCAATC TCCAAGTCAGAAAGTTCCTGGAGGCCACGCTGAGGACCCTAAGGGCAGGCTGGCATGTGG AACTAGACCCCTTCACAGCCTCGACACCCCTGGGGCCACTGGACTTTGGCAATGTGGTGG CCACACTGGACCCAGGGGCTGCCCGTCACCTCACCCTCGCCTGTCATTACGACTCCAAGC TCTTCCCATCTGGGTCAGCGCCCTTTGTGGGGGCCACGGATTCCGCTGTGCCTTGCGCTC TGCTACTGGAGCTGGCCCAGGCCCTCGACCTGGAGCTGAGCAGAGCCAAGGAGCAGGCAG CCTCAGTGACCCTGCAGCTGCTCTTCTTGGATGGTGAAGAGGCCCTGAGGGAGTGGGGAC CCAAGGACTCCCTCTATGGCTCCCGGCATCTGGCCCAGCTCATGGAGTCTGCGCCCCACA GCCCCGGCTTCACCAGGATCCAGGCTATTGAGCTCTTTATGCTTCTTGATCTCCTGGGCG CCCCCAACCCAACCTTCTACAGTCACTTCCCTCGCACGGCCCGCTGGTTCCATCGGCTGA GGAGCATTGAGAAGCGCTTGCACCGTTTGAACCTACTGCAGTCTCATCCTCGGGAAGTGA TGTACTTCCAGCCTGGGGAGCCCCCTGGCTCCGTGGAAGACGACCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTTCAGGGCGAAGCTGCCATGCGTTCAGGGGGCCGCGGGCGGCCCCGGCTACGGCTTG GGGAACGCGGCCTTTTGGAGCCACCCTCACCGCCCAAGCGCCGCCTGCTACCGCGGGCGC AGCTGTTGCCCCTGCTGTTGCTGGCGCTGGCGGTGGCCTCGGTGTTCTATACCATTTGGA GCGGCTGGCACCGCCAGACTGAGGAGCTGCCTCTGGGCCGGGAGATGCGGGGTCCGGGGC TCGGAAGCCTCCCCGAAGCCGGGCTTCGGAGGGTGGTGGGGCGACTGGACCCGCACCGTC TCTGGCACACTTATCTGCGCCCCCTGCTGGTTGTGCGGACCCCGGGCAGTCCGGGCAATC TCCAAGTCAGAAAGTTCCTGGAGGCCACGCTGAGGACCCTAAGGGCAGGCTGGCATGTGG AACTAGACCCCTTCACAGCCTCGACACCCCTGGGGCCACTGGACTTTGGCAATGTGGTGG CCACACTGGACCCAGGGGCTGCCCGTCACCTCACCCTCGCCTGTCATTACGACTCCAAGC TCTTCCCATCTGGGTCAGCGCCCTTTGTGGGGGCCACGGATTCCGCTGTGCCTTGCGCTC TGCTACTGGAGCTGGCCCAGGCCCTCGACCTGGAGCTGAGCAGAGCCAAGGAGCAGGCAG CCTCAGTGACCCTGCAGCTGCTCTTCTTGGATGGTGAAGAGGCCCTGAGGGAGTGGGGAC CCAAGGACTCCCTCTATGGCTCCCGGCATCTGGCCCAGCTCATGGAGTCTGCGCCCCACA GCCCCGGCTTCACCAGGATCCAGGCTATTGAGCTCTTTATGCTTCTTGATCTCCTGGGCG CCCCCAACCCAACCTTCTACAGTCACTTCCCTCGCACGGCCCGCTGGTTCCATCGGCTGA GGAGCATTGAGAAGCGCTTGCACCGTTTGAACCTACTGCAGTCTCATCCTCGGGAAGTGA TGTACTTCCAGCCTGGGGAGCCCCCTGGCTCCGTGGAAGACGACCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-231, - strand, RNAz p=0.957706 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-231, - strand, RNAz p=0.957706 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-231, gnl|bosTau2|chr18 (38246929-38246700) | |
| 2-231, gnl|canFam2|chr1 (112781980-112781633) | |
| 2-231, gnl|dasNov1|scaffold_11092 (43496-43160) | |
| 2-231, gnl|echTel1|scaffold_276225 (7015-7368) | |
| 2-231, gnl|hg17|chr19 (50887588-50887934) | |
| 2-231, gnl|Hg17|chr19 (50887783-50888009) | |
| 2-231, gnl|loxAfr1|scaffold_4240 (34620-34967) | |
| 2-231, gnl|mm7|chr7 (16831712-16831426) | |
| 2-231, gnl|Mm7|chr7 (16831578-16831349) | |
| 2-231, gnl|monDom2|scaffold_205 (688628-688967) | |
| 2-231, gnl|oryCun1|scaffold_157157 (8737-8402) | |
| 2-231, gnl|panTro1|chr20 (48178264-48178610) | |
| 2-231, gnl|rheMac2|chr19 (52141213-52141558) | |
| 2-231, gnl|rn3|chr1 (78586781-78586495) | |
| 373-653, gnl|bosTau2|chr18 (38245357-38245077) | |
| 373-653, gnl|Hg17|chr19 (50890533-50890813) | |
| 373-653, gnl|Mm7|chr7 (16829527-16829247) | |
| 810-914, gnl|bosTau2|chr18 (38243187-38243083) | |
| 810-914, gnl|canFam2|chr1 (112777979-112777856) | |
| 810-914, gnl|echTel1|scaffold_298565 (5934-5819) | |
| 810-914, gnl|fr1|chrUn (225137671-225137803) | |
| 810-914, gnl|hg17|chr19 (50893875-50894004) | |
| 810-914, gnl|Hg17|chr19 (50893899-50894003) | |
| 810-914, gnl|loxAfr1|scaffold_4240 (39526-39655) | |
| 810-914, gnl|mm7|chr7 (16827160-16827030) | |
| 810-914, gnl|Mm7|chr7 (16827133-16827029) | |
| 810-914, gnl|monDom2|scaffold_205 (695437-695566) | |
| 810-914, gnl|rheMac2|chr19 (52148423-52148552) | |
| 810-914, gnl|rn3|chr1 (78582171-78582041) | |
| 810-914, gnl|tetNig1|chr16 (1672747-1672631) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-231, gnl|bosTau2|chr18 (38246929-38246700) | |
| 2-231, gnl|canFam2|chr1 (112781980-112781633) | |
| 2-231, gnl|dasNov1|scaffold_11092 (43496-43160) | |
| 2-231, gnl|echTel1|scaffold_276225 (7015-7368) | |
| 2-231, gnl|hg17|chr19 (50887588-50887934) | |
| 2-231, gnl|Hg17|chr19 (50887783-50888009) | |
| 2-231, gnl|loxAfr1|scaffold_4240 (34620-34967) | |
| 2-231, gnl|mm7|chr7 (16831712-16831426) | |
| 2-231, gnl|Mm7|chr7 (16831578-16831349) | |
| 2-231, gnl|monDom2|scaffold_205 (688628-688967) | |
| 2-231, gnl|oryCun1|scaffold_157157 (8737-8402) | |
| 2-231, gnl|panTro1|chr20 (48178264-48178610) | |
| 2-231, gnl|rheMac2|chr19 (52141213-52141558) | |
| 2-231, gnl|rn3|chr1 (78586781-78586495) | |
| 373-653, gnl|bosTau2|chr18 (38245357-38245077) | |
| 373-653, gnl|Hg17|chr19 (50890533-50890813) | |
| 373-653, gnl|Mm7|chr7 (16829527-16829247) | |
| 810-914, gnl|bosTau2|chr18 (38243187-38243083) | |
| 810-914, gnl|canFam2|chr1 (112777979-112777856) | |
| 810-914, gnl|echTel1|scaffold_298565 (5934-5819) | |
| 810-914, gnl|fr1|chrUn (225137671-225137803) | |
| 810-914, gnl|hg17|chr19 (50893875-50894004) | |
| 810-914, gnl|Hg17|chr19 (50893899-50894003) | |
| 810-914, gnl|loxAfr1|scaffold_4240 (39526-39655) | |
| 810-914, gnl|mm7|chr7 (16827160-16827030) | |
| 810-914, gnl|Mm7|chr7 (16827133-16827029) | |
| 810-914, gnl|monDom2|scaffold_205 (695437-695566) | |
| 810-914, gnl|rheMac2|chr19 (52148423-52148552) | |
| 810-914, gnl|rn3|chr1 (78582171-78582041) | |
| 810-914, gnl|tetNig1|chr16 (1672747-1672631) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mas (0.210305) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| lnt (0.142308) | |
| eep (0.122564) | |
| cty (0.10408) |