Non-Coding RNA Search

Ss1.1-Spl1-SPL01G040090.5

Sequence:


               
               AGTAGGGCCTCGGCCGCGACTATGGAGGGAGCCGGTTACAGGGTGGTGTTTGAGAAGGGA
GGCGTGTACCTGCACACCAGTGCCAAGAAACACCAAGACCCAGACTCCCTCATCGCCGGC
GTTATCCGTGTCGTGGAGAAGGACAATGATGTCCTCCTGCACTGGGCTCCTGTAGAGGAG
GCTGGAGATTCCACCCAAATCTTCTTCTCCAAGAAGGATCCCAGTGGGGGTGACTCCTGC
CCCTCTGAAGAGGAACCGACCTTCGACCCTGGCTATGAACCCGACTGGGCTGTCATCAGC
ACCGTGCGGCCACGGCCTCGCCACTCAGAGCCCACAAGAGGTGCAGAGCCCAGCTCCCCC
CGGGGCTCCTGGGCCTTCTCGGTGAGTCTGGGGGAGCTCAAGTCCATCCGCCGTTCCAAG
CCGGGCCTCAGCTGGGCATACCTGGTCCTGGTCACGCAGGCCGGAGGCTCCCTGCCCGCC
CTGCACTTCCACCGCGGGGGCACCCGCGCCCTGCTCTTCCCGTCTTTGCACATCCTGCCA
GGCTCCCCCACGTTAAGTGCTGCCTCTGAAGTCTTTGGGCTGTCAAAGTGCCAAGTGCAA
GGTGACAGGGTAATTTGGGTGCATCACACAAGGGTGCTGGAGACCCAGAGGAGGTATCTC
ACCCCCAGGCAGAGGTGGTGTCAGAGGCTGGCTCTGCTCTGAGGGGCGCTTGGGAGTTTG
CTCTCCCAGCAGGAGCAAAGCCAGCGGCCTGGGGCGTGTGTAGGAAACCTCAGCCTGTTG
TCGAGGCTCAAGGGTGGGATCCCGAACGAAGAGAGGGTCGAGGGTCGGAGGTGAGACGGA
CAGGGTGGGAGGCCTGGGGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGGGCCTCGGCCGCGACTATGGAGGGAGCCGGTTACAGGGTGGTGTTTGAGAAGGGA
GGCGTGTACCTGCACACCAGTGCCAAGAAACACCAAGACCCAGACTCCCTCATCGCCGGC
GTTATCCGTGTCGTGGAGAAGGACAATGATGTCCTCCTGCACTGGGCTCCTGTAGAGGAG
GCTGGAGATTCCACCCAAATCTTCTTCTCCAAGAAGGATCCCAGTGGGGGTGACTCCTGC
CCCTCTGAAGAGGAACCGACCTTCGACCCTGGCTATGAACCCGACTGGGCTGTCATCAGC
ACCGTGCGGCCACGGCCTCGCCACTCAGAGCCCACAAGAGGTGCAGAGCCCAGCTCCCCC
CGGGGCTCCTGGGCCTTCTCGGTGAGTCTGGGGGAGCTCAAGTCCATCCGCCGTTCCAAG
CCGGGCCTCAGCTGGGCATACCTGGTCCTGGTCACGCAGGCCGGAGGCTCCCTGCCCGCC
CTGCACTTCCACCGCGGGGGCACCCGCGCCCTGCTCTTCCCGTCTTTGCACATCCTGCCA
GGCTCCCCCACGTTAAGTGCTGCCTCTGAAGTCTTTGGGCTGTCAAAGTGCCAAGTGCAA
GGTGACAGGGTAATTTGGGTGCATCACACAAGGGTGCTGGAGACCCAGAGGAGGTATCTC
ACCCCCAGGCAGAGGTGGTGTCAGAGGCTGGCTCTGCTCTGAGGGGCGCTTGGGAGTTTG
CTCTCCCAGCAGGAGCAAAGCCAGCGGCCTGGGGCGTGTGTAGGAAACCTCAGCCTGTTG
TCGAGGCTCAAGGGTGGGATCCCGAACGAAGAGAGGGTCGAGGGTCGGAGGTGAGACGGA
CAGGGTGGGAGGCCTGGGGCTGGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               339-516, gnl|bosTau2|chr18 (48913748-48913925)
               

               
               339-516, gnl|Hg17|chr19 (55076335-55076512)
               

               
               339-516, gnl|Mm7|chr7 (41020606-41020429)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               339-516, gnl|bosTau2|chr18 (48913748-48913925)
               

               
               339-516, gnl|Hg17|chr19 (55076335-55076512)
               

               
               339-516, gnl|Mm7|chr7 (41020606-41020429)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	339-516, gnl\|bosTau2\|chr18 (48913748-48913925)
	339-516, gnl\|Hg17\|chr19 (55076335-55076512)
	339-516, gnl\|Mm7\|chr7 (41020606-41020429)