Non-Coding RNA Search

Ss1.1-Spl1-SPL01G050044.5

Sequence:


               
               CCCTGGGGGTCTGCTCCCGGCCCTGCCCCCTCCATGCCCGATGCCGCTGACCTTCACCTG
CGGCCGCAGCGCTGGGCTCTTGGCGACGCCAGGGCCAGGGGCTCCGGGGAGGAAGCCCGG
ATGTCAGGCTCAGCTCTGCTGCTCTGGCCGCGACCCGGCCCGGCAGGCTTGGAGGTGGCT
GGCCATCCTCCGCATCACCAGCCTCTGGGCCCGCAAGCGCCTGCGGAGCCTCTCGTTCTC
CCGCAGAGTCAGGAAGAGTTTCTTTTTTAAGGCGTCCAAGTCCAGAAGGGCATAGCTGTG
GTCCGGTGGCTGCGTGGACGGCGGTCTTCCGGCCCCCGGGGGGCTGGCCGGCTGCCCCGG
GGCCTTGGCCACGGCTCCCGTTCTGCCAGGCTGGCCCTGTGCTCGGGGGCCCCCGGCGTC
CGGGGGCGGCTGCCGCACCTCGAGTGCCGTGTCCCTCTTCCTCCCCGGGCCACACTCGCT
GGGCCCCGTCTCAGGGTGGACCTCTCCCTTCTCAGAGGCGGCCCCGATCTGGCCATCAGG
GTCAGCCGTCTCCCGCACCAGCTGCGGGGGCCCCTGGAAGGTGAACTCCGTGGGCACCGC
GTTGTGCTTCAGGTTCTTGCGGTTCCCAAAGGCGCTGAAGCACTCGGGGCGGAAGTGCTC
CGAGCAGATGACCGTGTGCTGCTTGGGCTCGAAGTCGCCTCGGCCGATGTTCAGCACCCA
TTCCTTTAGCAGCTCTGGGCGGCTGAACGGGAACCGGTGGAAGGTGAGCTGCTTCCTGCG
ACTGCTGTAGCGGTTGCAACACTGCCGGGCAGCGCACGACTTCGGCATCTCCAGACGCCC
GGCCCTGCTGCCCCCAACAAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGGGGTCTGCTCCCGGCCCTGCCCCCTCCATGCCCGATGCCGCTGACCTTCACCTG
CGGCCGCAGCGCTGGGCTCTTGGCGACGCCAGGGCCAGGGGCTCCGGGGAGGAAGCCCGG
ATGTCAGGCTCAGCTCTGCTGCTCTGGCCGCGACCCGGCCCGGCAGGCTTGGAGGTGGCT
GGCCATCCTCCGCATCACCAGCCTCTGGGCCCGCAAGCGCCTGCGGAGCCTCTCGTTCTC
CCGCAGAGTCAGGAAGAGTTTCTTTTTTAAGGCGTCCAAGTCCAGAAGGGCATAGCTGTG
GTCCGGTGGCTGCGTGGACGGCGGTCTTCCGGCCCCCGGGGGGCTGGCCGGCTGCCCCGG
GGCCTTGGCCACGGCTCCCGTTCTGCCAGGCTGGCCCTGTGCTCGGGGGCCCCCGGCGTC
CGGGGGCGGCTGCCGCACCTCGAGTGCCGTGTCCCTCTTCCTCCCCGGGCCACACTCGCT
GGGCCCCGTCTCAGGGTGGACCTCTCCCTTCTCAGAGGCGGCCCCGATCTGGCCATCAGG
GTCAGCCGTCTCCCGCACCAGCTGCGGGGGCCCCTGGAAGGTGAACTCCGTGGGCACCGC
GTTGTGCTTCAGGTTCTTGCGGTTCCCAAAGGCGCTGAAGCACTCGGGGCGGAAGTGCTC
CGAGCAGATGACCGTGTGCTGCTTGGGCTCGAAGTCGCCTCGGCCGATGTTCAGCACCCA
TTCCTTTAGCAGCTCTGGGCGGCTGAACGGGAACCGGTGGAAGGTGAGCTGCTTCCTGCG
ACTGCTGTAGCGGTTGCAACACTGCCGGGCAGCGCACGACTTCGGCATCTCCAGACGCCC
GGCCCTGCTGCCCCCAACAAAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56202784|emb|CAI19468.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56202784|emb|CAI19468.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               593-712, + strand, RNAz p=0.620683

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               593-712, + strand, RNAz p=0.620683

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               154-364, gnl|bosTau2|chr16 (34572053-34572263)
               

               
               154-364, gnl|Hg17|chr1 (6627358-6627151)
               

               
               154-364, gnl|Mm7|chr4 (150972649-150972859)
               


               
               385-503, gnl|bosTau2|chr16 (34572503-34572621)
               

               
               385-503, gnl|canFam2|chr5 (63447310-63447605)
               

               
               385-503, gnl|dasNov1|scaffold_29950 (11967-11635)
               

               
               385-503, gnl|hg17|chr1 (6626708-6626996)
               

               
               385-503, gnl|Hg17|chr1 (6626833-6626715)
               

               
               385-503, gnl|loxAfr1|scaffold_226969 (640-304)
               

               
               385-503, gnl|mm7|chr4 (150973289-150973015)
               

               
               385-503, gnl|Mm7|chr4 (150973168-150973280)
               

               
               385-503, gnl|monDom2|scaffold_78 (1655102-1654813)
               

               
               385-503, gnl|oryCun1|scaffold_179383 (742-528)
               

               
               385-503, gnl|panTro1|chr1 (6587491-6587779)
               

               
               385-503, gnl|rheMac2|chr1 (9652297-9652580)
               

               
               385-503, gnl|rn3|chr5 (169221007-169220745)
               


               
               559-760, gnl|bosTau2|chr16 (34574537-34574738)
               

               
               559-760, gnl|Hg17|chr1 (6623026-6622819)
               

               
               559-760, gnl|Mm7|chr4 (150975209-150975409)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-364, gnl|bosTau2|chr16 (34572053-34572263)
               

               
               154-364, gnl|Hg17|chr1 (6627358-6627151)
               

               
               154-364, gnl|Mm7|chr4 (150972649-150972859)
               


               
               385-503, gnl|bosTau2|chr16 (34572503-34572621)
               

               
               385-503, gnl|canFam2|chr5 (63447310-63447605)
               

               
               385-503, gnl|dasNov1|scaffold_29950 (11967-11635)
               

               
               385-503, gnl|hg17|chr1 (6626708-6626996)
               

               
               385-503, gnl|Hg17|chr1 (6626833-6626715)
               

               
               385-503, gnl|loxAfr1|scaffold_226969 (640-304)
               

               
               385-503, gnl|mm7|chr4 (150973289-150973015)
               

               
               385-503, gnl|Mm7|chr4 (150973168-150973280)
               

               
               385-503, gnl|monDom2|scaffold_78 (1655102-1654813)
               

               
               385-503, gnl|oryCun1|scaffold_179383 (742-528)
               

               
               385-503, gnl|panTro1|chr1 (6587491-6587779)
               

               
               385-503, gnl|rheMac2|chr1 (9652297-9652580)
               

               
               385-503, gnl|rn3|chr5 (169221007-169220745)
               


               
               559-760, gnl|bosTau2|chr16 (34574537-34574738)
               

               
               559-760, gnl|Hg17|chr1 (6623026-6622819)
               

               
               559-760, gnl|Mm7|chr4 (150975209-150975409)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	154-364, gnl\|bosTau2\|chr16 (34572053-34572263)
	154-364, gnl\|Hg17\|chr1 (6627358-6627151)
	154-364, gnl\|Mm7\|chr4 (150972649-150972859)

	385-503, gnl\|bosTau2\|chr16 (34572503-34572621)
	385-503, gnl\|canFam2\|chr5 (63447310-63447605)
	385-503, gnl\|dasNov1\|scaffold_29950 (11967-11635)
	385-503, gnl\|hg17\|chr1 (6626708-6626996)
	385-503, gnl\|Hg17\|chr1 (6626833-6626715)
	385-503, gnl\|loxAfr1\|scaffold_226969 (640-304)
	385-503, gnl\|mm7\|chr4 (150973289-150973015)
	385-503, gnl\|Mm7\|chr4 (150973168-150973280)
	385-503, gnl\|monDom2\|scaffold_78 (1655102-1654813)
	385-503, gnl\|oryCun1\|scaffold_179383 (742-528)
	385-503, gnl\|panTro1\|chr1 (6587491-6587779)
	385-503, gnl\|rheMac2\|chr1 (9652297-9652580)
	385-503, gnl\|rn3\|chr5 (169221007-169220745)

	559-760, gnl\|bosTau2\|chr16 (34574537-34574738)
	559-760, gnl\|Hg17\|chr1 (6623026-6622819)
	559-760, gnl\|Mm7\|chr4 (150975209-150975409)