Non-Coding RNA Search

Ss1.1-Spl1-SPL01G050048.5

Sequence:


               
               TCTGTGTGGGGGAGACGGGCATCGGCAAGTCCACACTGATGAACACGCTCTTCAACACGA
CCTTCGAGACCGAGGAAGCCAGTCACCACGAGGAGTGCGTGCGGCTGCGGCCCCAGACCT
ACGACCTCCAAGAGAGCAACGTGCAGCTCAAGCTGACCATCGTGGACGCCGTGGGCTTCG
GGGATCAGATCAACAAGGATGAGAGTTACAGGCCCATCGTCGACTACATCGACGCGCAGT
TTGAAAACTACCTGCAGGAGGAGCTGAAGATCCGCCGCTCGCTCTTCGACTACCACGACA
CGAGGATCCACGTCTGCCTCTACTTCATCACGCCCACCGGGCACTCCCTCAAGTCCCTGG
ATCTGGTGACCATGAAGAAACTGGACAGCAAGGTGAACATCATTCCCATCATTGCCAAGG
CTGACACCATCTCCAAGAGTGAACTCCACAAGTTCAAGATCAAGATCATGGGCGAGCTGG
TCAGCAATGGGGTCCAGATCTACCAGTTTCCCACTGATGACGAGGCTGTTGCCGAGATCA
ACGCAGTCATGAATGCACACCTGCCCTTTGCCGTGGTGGGCAGCACGGAGGAGGTGAAGG
TGGGGAACAAGCTGGTGCGAGCACGGCAGTACCCGTGGGGAGTGGTGCAAGTGGAGAACG
AGAATCACTGCGACTTCGTGAAGCTCCGGGAGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGTGGGGGAGACGGGCATCGGCAAGTCCACACTGATGAACACGCTCTTCAACACGA
CCTTCGAGACCGAGGAAGCCAGTCACCACGAGGAGTGCGTGCGGCTGCGGCCCCAGACCT
ACGACCTCCAAGAGAGCAACGTGCAGCTCAAGCTGACCATCGTGGACGCCGTGGGCTTCG
GGGATCAGATCAACAAGGATGAGAGTTACAGGCCCATCGTCGACTACATCGACGCGCAGT
TTGAAAACTACCTGCAGGAGGAGCTGAAGATCCGCCGCTCGCTCTTCGACTACCACGACA
CGAGGATCCACGTCTGCCTCTACTTCATCACGCCCACCGGGCACTCCCTCAAGTCCCTGG
ATCTGGTGACCATGAAGAAACTGGACAGCAAGGTGAACATCATTCCCATCATTGCCAAGG
CTGACACCATCTCCAAGAGTGAACTCCACAAGTTCAAGATCAAGATCATGGGCGAGCTGG
TCAGCAATGGGGTCCAGATCTACCAGTTTCCCACTGATGACGAGGCTGTTGCCGAGATCA
ACGCAGTCATGAATGCACACCTGCCCTTTGCCGTGGTGGGCAGCACGGAGGAGGTGAAGG
TGGGGAACAAGCTGGTGCGAGCACGGCAGTACCCGTGGGGAGTGGTGCAAGTGGAGAACG
AGAATCACTGCGACTTCGTGAAGCTCCGGGAGATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27448554|gb|AAO13880.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27448554|gb|AAO13880.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-521, - strand, RNAz p=0.85086

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-521, - strand, RNAz p=0.85086

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               3-696, gnl|bosTau2|chr16 (36125174-36125863)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-696, gnl|bosTau2|chr16 (36125174-36125863)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)