Ss1.1-Spl1-SPL01G070057.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCCAGGCCGGAAGGAGGCAGCGGGAGGGTGGGAGGCAGGAGCGGGCCCGGAGCTGCT GGGCCAGAGCGGCGGCGCCGCCATGTCCGACAGCGAGAAGCTCAACCTGGACTCTATCAT CGGGCGCCTGCTGGAAGTGCAGGGCTCGCGGCCTGGAAAGAATGTACAGCTGACAGAGAA CGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATCCTTCT GGAGCTGGAGGCACCCCTCAAGATCTGCGGTGACATCCATGGCCAGTACTATGACCTTCT GCGGCTGTTCGAGTACGGCGGCTTCCCTCCAGAGAGCAACTACCTGTTCCTGGGGGACTA CGTGGACCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGCTGCTGGCCTATAAGATCAA GTACCCGGAGAACTTCTTCCTGCTCCGTGGGAACCACGAGTGTGCCAGCATCAACCGCAT CTATGGCTTCTACGATGAGTGCAAGAGACGCTACAACATCAAGCTGTGGAAAACCTTCAC TGACTGCTTCAACTGCCTGCCTATCGCTGCCATTGTGGACGAGAAGATCTTTTGCTGCCA CGGAGGCCTGTCCCCCGACCTGCAGTCCATGGAGCAGATTCGGCGTATCATGCGGCCCAC AGACGTGCCTGACCAGGGCTTACTGTGTGACCTGCTGTGGTCTGACCCCGACAAGGACGT GCAGGGCTGGGGCGAGAATGACCGCGGCGTCTCCTTTACCTTTGGAGCGGAGGTGGTGGC CAAGTTCCTGCACAAGCACGACTTGGATCTCATCTGCCGGGCACACCAGGTGGTAGAAGA TGGCTACGAGTTCTTTGCCAAGAGGCAGCTGGTGACACTCTTCTCAGCTCCTAACTACTG CGGCGAGTTTGACAACGCAGGCGCCATGATGAGCGTGGACGAGACGCTCATGTGCTCCTT CCAGATCCTCAAGCCCGCCGACAAGAACAAGGGGAAATATGGGCAGTTCAGTGGCCTGAA TCCTGGAGGCCGGCCCATCACCCCACCCCGCAACTCCGCCAAAGCCAAGAAATAGCCTCC ATGTGCCCGCCCTCTATCCCAGATGGTGGATTGTACAGAAATCACATGGCCACAGGGGGG GTCACACTGGCCCCCAGGCCCACTTGTCATGGGGAACACGGAGCCTTGGTGTATTTTTCT TTCTTCCTTTTTTTTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCCAGGCCGGAAGGAGGCAGCGGGAGGGTGGGAGGCAGGAGCGGGCCCGGAGCTGCT GGGCCAGAGCGGCGGCGCCGCCATGTCCGACAGCGAGAAGCTCAACCTGGACTCTATCAT CGGGCGCCTGCTGGAAGTGCAGGGCTCGCGGCCTGGAAAGAATGTACAGCTGACAGAGAA CGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATCCTTCT GGAGCTGGAGGCACCCCTCAAGATCTGCGGTGACATCCATGGCCAGTACTATGACCTTCT GCGGCTGTTCGAGTACGGCGGCTTCCCTCCAGAGAGCAACTACCTGTTCCTGGGGGACTA CGTGGACCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGCTGCTGGCCTATAAGATCAA GTACCCGGAGAACTTCTTCCTGCTCCGTGGGAACCACGAGTGTGCCAGCATCAACCGCAT CTATGGCTTCTACGATGAGTGCAAGAGACGCTACAACATCAAGCTGTGGAAAACCTTCAC TGACTGCTTCAACTGCCTGCCTATCGCTGCCATTGTGGACGAGAAGATCTTTTGCTGCCA CGGAGGCCTGTCCCCCGACCTGCAGTCCATGGAGCAGATTCGGCGTATCATGCGGCCCAC AGACGTGCCTGACCAGGGCTTACTGTGTGACCTGCTGTGGTCTGACCCCGACAAGGACGT GCAGGGCTGGGGCGAGAATGACCGCGGCGTCTCCTTTACCTTTGGAGCGGAGGTGGTGGC CAAGTTCCTGCACAAGCACGACTTGGATCTCATCTGCCGGGCACACCAGGTGGTAGAAGA TGGCTACGAGTTCTTTGCCAAGAGGCAGCTGGTGACACTCTTCTCAGCTCCTAACTACTG CGGCGAGTTTGACAACGCAGGCGCCATGATGAGCGTGGACGAGACGCTCATGTGCTCCTT CCAGATCCTCAAGCCCGCCGACAAGAACAAGGGGAAATATGGGCAGTTCAGTGGCCTGAA TCCTGGAGGCCGGCCCATCACCCCACCCCGCAACTCCGCCAAAGCCAAGAAATAGCCTCC ATGTGCCCGCCCTCTATCCCAGATGGTGGATTGTACAGAAATCACATGGCCACAGGGGGG GTCACACTGGCCCCCAGGCCCACTTGTCATGGGGAACACGGAGCCTTGGTGTATTTTTCT TTCTTCCTTTTTTTTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 308-427, - strand, RNAz p=0.680261 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 308-427, - strand, RNAz p=0.680261 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 269-505, gnl|bosTau2|chr11 (51184935-51185171) | |
| 269-505, gnl|canFam2|chr17 (25786260-25786465) | |
| 269-505, gnl|danRer3|chr17 (1292952-1293157) | |
| 269-505, gnl|dasNov1|scaffold_83781 (10173-9968) | |
| 269-505, gnl|echTel1|scaffold_268310 (8024-8229) | |
| 269-505, gnl|fr1|chrUn (192602860-192602655) | |
| 269-505, gnl|galGal2|chr3 (23553031-23552826) | |
| 269-505, gnl|hg17|chr2 (28913325-28913530) | |
| 269-505, gnl|Hg17|chr2 (28913325-28913561) | |
| 269-505, gnl|loxAfr1|scaffold_2968 (28963-29168) | |
| 269-505, gnl|mm7|chr5 (31513205-31513410) | |
| 269-505, gnl|Mm7|chr5 (31513205-31513441) | |
| 269-505, gnl|monDom2|scaffold_1 (146824502-146824297) | |
| 269-505, gnl|oryCun1|scaffold_8520 (3617-3412) | |
| 269-505, gnl|panTro1|chr12 (29871789-29871993) | |
| 269-505, gnl|rheMac2|chr13 (28773472-28773677) | |
| 269-505, gnl|rn3|chr6 (24082742-24082537) | |
| 269-505, gnl|tetNig1|chr10 (8137754-8137959) | |
| 269-505, gnl|xenTro1|scaffold_501 (234369-234574) | |
| 826-964, gnl|bosTau2|chr11 (51195698-51195836) | |
| 826-964, gnl|canFam2|chr17 (25799503-25799606) | |
| 826-964, gnl|danRer3|chr17 (1295467-1295563) | |
| 826-964, gnl|dasNov1|scaffold_63002 (2215-2112) | |
| 826-964, gnl|echTel1|scaffold_268310 (19576-19679) | |
| 826-964, gnl|fr1|chrUn (192600881-192600781) | |
| 826-964, gnl|galGal2|chr3 (23539841-23539747) | |
| 826-964, gnl|hg17|chr2 (28928366-28928469) | |
| 826-964, gnl|Hg17|chr2 (28928376-28928514) | |
| 826-964, gnl|loxAfr1|scaffold_2968 (41938-42041) | |
| 826-964, gnl|mm7|chr5 (31520074-31520176) | |
| 826-964, gnl|Mm7|chr5 (31520083-31520221) | |
| 826-964, gnl|monDom2|scaffold_1 (146795727-146795631) | |
| 826-964, gnl|oryCun1|scaffold_213132 (126471-126573) | |
| 826-964, gnl|panTro1|chr12 (29886609-29886712) | |
| 826-964, gnl|rheMac2|chr13 (28788512-28788615) | |
| 826-964, gnl|rn3|chr6 (24076058-24075956) | |
| 826-964, gnl|tetNig1|chr10 (8138826-8138917) | |
| 826-964, gnl|xenTro1|scaffold_178 (1351515-1351613) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 269-505, gnl|bosTau2|chr11 (51184935-51185171) | |
| 269-505, gnl|canFam2|chr17 (25786260-25786465) | |
| 269-505, gnl|danRer3|chr17 (1292952-1293157) | |
| 269-505, gnl|dasNov1|scaffold_83781 (10173-9968) | |
| 269-505, gnl|echTel1|scaffold_268310 (8024-8229) | |
| 269-505, gnl|fr1|chrUn (192602860-192602655) | |
| 269-505, gnl|galGal2|chr3 (23553031-23552826) | |
| 269-505, gnl|hg17|chr2 (28913325-28913530) | |
| 269-505, gnl|Hg17|chr2 (28913325-28913561) | |
| 269-505, gnl|loxAfr1|scaffold_2968 (28963-29168) | |
| 269-505, gnl|mm7|chr5 (31513205-31513410) | |
| 269-505, gnl|Mm7|chr5 (31513205-31513441) | |
| 269-505, gnl|monDom2|scaffold_1 (146824502-146824297) | |
| 269-505, gnl|oryCun1|scaffold_8520 (3617-3412) | |
| 269-505, gnl|panTro1|chr12 (29871789-29871993) | |
| 269-505, gnl|rheMac2|chr13 (28773472-28773677) | |
| 269-505, gnl|rn3|chr6 (24082742-24082537) | |
| 269-505, gnl|tetNig1|chr10 (8137754-8137959) | |
| 269-505, gnl|xenTro1|scaffold_501 (234369-234574) | |
| 826-964, gnl|bosTau2|chr11 (51195698-51195836) | |
| 826-964, gnl|canFam2|chr17 (25799503-25799606) | |
| 826-964, gnl|danRer3|chr17 (1295467-1295563) | |
| 826-964, gnl|dasNov1|scaffold_63002 (2215-2112) | |
| 826-964, gnl|echTel1|scaffold_268310 (19576-19679) | |
| 826-964, gnl|fr1|chrUn (192600881-192600781) | |
| 826-964, gnl|galGal2|chr3 (23539841-23539747) | |
| 826-964, gnl|hg17|chr2 (28928366-28928469) | |
| 826-964, gnl|Hg17|chr2 (28928376-28928514) | |
| 826-964, gnl|loxAfr1|scaffold_2968 (41938-42041) | |
| 826-964, gnl|mm7|chr5 (31520074-31520176) | |
| 826-964, gnl|Mm7|chr5 (31520083-31520221) | |
| 826-964, gnl|monDom2|scaffold_1 (146795727-146795631) | |
| 826-964, gnl|oryCun1|scaffold_213132 (126471-126573) | |
| 826-964, gnl|panTro1|chr12 (29886609-29886712) | |
| 826-964, gnl|rheMac2|chr13 (28788512-28788615) | |
| 826-964, gnl|rn3|chr6 (24076058-24075956) | |
| 826-964, gnl|tetNig1|chr10 (8138826-8138917) | |
| 826-964, gnl|xenTro1|scaffold_178 (1351515-1351613) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cov (0.396458) | |
| cag (0.302389) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| cag (0.302389) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| cly (0.120642) | |
| jej (0.0989218) |