Ss1.1-Spl1-SPL01G070058.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTTTTTTTTTTTTCTCTCAAGTGCCAGGAAGCAGCCTCAGGAATCAGGACGTGTGAAGTT AGGCAGTCTAGGGGTCTTGGCCTCGGGAATTTGGTGACTGTGAGGTTGCCGGGACGGGGT GGAGCAGGCCCCAGGCCGTGGTGAGGACCCCAGGATTCTTGTCGTAGATGGGCCAGGAGA GAAGAGGCCTGTGAAGCGGCTGCCACGGTGAGGATCCCAGGATTTGCCTCCGGTTACAAC TACATCCTCCTAACGCTTGAGCAGCATGAATTTCAACAGATGTCTCTATAATATTGGGGA ACATTTGGACAGTGATGACCTGGCTTCCCTCAAGTTCCTGAGCCTGGACTACATCCCACA TAGGAAGCAGGAACCCATCAAAGATGCTCTGATGTTATTCCAGAGGCTCCAAGAAAAGAG AATGTTGGAGGAAAGCAACTTGTCCTTCTTGAAGGAACTGCTTTTCCGAATGAATAGACT GGATCTTCTGATCAATTACCTGGAAACCAATGAGGAGGAGATGGAGAGTGAGCTTCGGAT ACCAGGCAGGGCCCAGATCTCTGCCTACAGGGTCATGCTTTTTCAGATTTCCGAAAATGT GACCAGGTCGGAATTGAAGGACTTTAAGTTTTTTTTGAGTCAGGAGATTGCCAAATGTAA ACTGGATGATGACATGACCTTGCTTGATATGTTTATAGAGATGGAGAAGAGGGCCATCCT AGGGGAAAGAAATTTGGAGACTCTGAAAAGAATCTGTGAACAAATCAACAAGGCCCTGCT GAAGAAAATCTGTGATTATGAAGAATTAAACAAAGATCGAAGAATGAGCCTTGAAAGTGC TTCGGATGAATTTTCAAATGATATGTCTCAACTGGTGATCCAGGAGGGGTCCCTGGGAGA GCTGGCCATGTCGGACTGTCTGGGAGAACAGGACAGTGATTCAGAGGCATCAGAAGCAGT TTACCGAATGAAAAGCAAGCCTCGGGGATACTGTTTGATCTTCAACAATTATGATTTTAG TGTAGCACGGAAGAATATAGCCAGACTTCACAACATTAAGGATAGAAATGGAACAGACTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTTTTTTTTTTTTCTCTCAAGTGCCAGGAAGCAGCCTCAGGAATCAGGACGTGTGAAGTT AGGCAGTCTAGGGGTCTTGGCCTCGGGAATTTGGTGACTGTGAGGTTGCCGGGACGGGGT GGAGCAGGCCCCAGGCCGTGGTGAGGACCCCAGGATTCTTGTCGTAGATGGGCCAGGAGA GAAGAGGCCTGTGAAGCGGCTGCCACGGTGAGGATCCCAGGATTTGCCTCCGGTTACAAC TACATCCTCCTAACGCTTGAGCAGCATGAATTTCAACAGATGTCTCTATAATATTGGGGA ACATTTGGACAGTGATGACCTGGCTTCCCTCAAGTTCCTGAGCCTGGACTACATCCCACA TAGGAAGCAGGAACCCATCAAAGATGCTCTGATGTTATTCCAGAGGCTCCAAGAAAAGAG AATGTTGGAGGAAAGCAACTTGTCCTTCTTGAAGGAACTGCTTTTCCGAATGAATAGACT GGATCTTCTGATCAATTACCTGGAAACCAATGAGGAGGAGATGGAGAGTGAGCTTCGGAT ACCAGGCAGGGCCCAGATCTCTGCCTACAGGGTCATGCTTTTTCAGATTTCCGAAAATGT GACCAGGTCGGAATTGAAGGACTTTAAGTTTTTTTTGAGTCAGGAGATTGCCAAATGTAA ACTGGATGATGACATGACCTTGCTTGATATGTTTATAGAGATGGAGAAGAGGGCCATCCT AGGGGAAAGAAATTTGGAGACTCTGAAAAGAATCTGTGAACAAATCAACAAGGCCCTGCT GAAGAAAATCTGTGATTATGAAGAATTAAACAAAGATCGAAGAATGAGCCTTGAAAGTGC TTCGGATGAATTTTCAAATGATATGTCTCAACTGGTGATCCAGGAGGGGTCCCTGGGAGA GCTGGCCATGTCGGACTGTCTGGGAGAACAGGACAGTGATTCAGAGGCATCAGAAGCAGT TTACCGAATGAAAAGCAAGCCTCGGGGATACTGTTTGATCTTCAACAATTATGATTTTAG TGTAGCACGGAAGAATATAGCCAGACTTCACAACATTAAGGATAGAAATGGAACAGACTT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
350-469, - strand, RNAz p=0.939102 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
350-469, - strand, RNAz p=0.939102 |
Aligned organism(s): 40 entry(ies) | More info |
Aligned organism(s): 40 entry(ies) | Help | Less info |
28-128, gnl|bosTau2|chr2 (52403097-52403195) | |
28-128, gnl|canFam2|chr37 (13380534-13380650) | |
28-128, gnl|dasNov1|scaffold_10522 (6707-6594) | |
28-128, gnl|hg17|chr2 (201948544-201948650) | |
28-128, gnl|loxAfr1|scaffold_46099 (9051-9199) | |
28-128, gnl|oryCun1|scaffold_103794 (76-176) | |
28-128, gnl|panTro1|chr13_random (25347036-25347142) | |
28-128, gnl|rheMac2|chr12 (65022372-65022478) | |
232-571, gnl|bosTau2|chr2 (52415090-52415429) | |
232-571, gnl|Hg17|chr2 (201956689-201957021) | |
232-571, gnl|Mm7|chr1 (59075003-59075337) | |
676-815, gnl|bosTau2|chr2 (52418996-52419135) | |
676-815, gnl|canFam2|chr37 (13394830-13395038) | |
676-815, gnl|dasNov1|scaffold_23322 (16530-16331) | |
676-815, gnl|echTel1|scaffold_309986 (10263-10466) | |
676-815, gnl|galGal2|chr7 (12343263-12343443) | |
676-815, gnl|hg17|chr2 (201962793-201963001) | |
676-815, gnl|Hg17|chr2 (201962866-201963005) | |
676-815, gnl|loxAfr1|scaffold_53208 (30683-30475) | |
676-815, gnl|mm7|chr1 (59079896-59080096) | |
676-815, gnl|Mm7|chr1 (59079961-59080100) | |
676-815, gnl|monDom2|scaffold_64 (9618330-9618553) | |
676-815, gnl|panTro1|chr13 (91952301-91952510) | |
676-815, gnl|rheMac2|chr12 (65036327-65036536) | |
676-815, gnl|rn3|chr9 (57570124-57570326) | |
945-1080, gnl|bosTau2|chr2 (52421489-52421624) | |
945-1080, gnl|canFam2|chr37 (13397188-13397408) | |
945-1080, gnl|danRer3|chr5 (8915402-8915217) | |
945-1080, gnl|echTel1|scaffold_280955 (82887-83108) | |
945-1080, gnl|galGal2|chr7 (12344295-12344497) | |
945-1080, gnl|hg17|chr2 (201967018-201967240) | |
945-1080, gnl|Hg17|chr2 (201967054-201967189) | |
945-1080, gnl|loxAfr1|scaffold_35352 (14283-14061) | |
945-1080, gnl|mm7|chr1 (59084684-59084905) | |
945-1080, gnl|Mm7|chr1 (59084720-59084855) | |
945-1080, gnl|monDom2|scaffold_64 (9622985-9623208) | |
945-1080, gnl|oryCun1|scaffold_87373 (4400-4192) | |
945-1080, gnl|panTro1|chr13 (91956538-91956760) | |
945-1080, gnl|rheMac2|chr12 (65040576-65040792) | |
945-1080, gnl|rn3|chr9 (57574928-57575149) |
Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
28-128, gnl|bosTau2|chr2 (52403097-52403195) | |
28-128, gnl|canFam2|chr37 (13380534-13380650) | |
28-128, gnl|dasNov1|scaffold_10522 (6707-6594) | |
28-128, gnl|hg17|chr2 (201948544-201948650) | |
28-128, gnl|loxAfr1|scaffold_46099 (9051-9199) | |
28-128, gnl|oryCun1|scaffold_103794 (76-176) | |
28-128, gnl|panTro1|chr13_random (25347036-25347142) | |
28-128, gnl|rheMac2|chr12 (65022372-65022478) | |
232-571, gnl|bosTau2|chr2 (52415090-52415429) | |
232-571, gnl|Hg17|chr2 (201956689-201957021) | |
232-571, gnl|Mm7|chr1 (59075003-59075337) | |
676-815, gnl|bosTau2|chr2 (52418996-52419135) | |
676-815, gnl|canFam2|chr37 (13394830-13395038) | |
676-815, gnl|dasNov1|scaffold_23322 (16530-16331) | |
676-815, gnl|echTel1|scaffold_309986 (10263-10466) | |
676-815, gnl|galGal2|chr7 (12343263-12343443) | |
676-815, gnl|hg17|chr2 (201962793-201963001) | |
676-815, gnl|Hg17|chr2 (201962866-201963005) | |
676-815, gnl|loxAfr1|scaffold_53208 (30683-30475) | |
676-815, gnl|mm7|chr1 (59079896-59080096) | |
676-815, gnl|Mm7|chr1 (59079961-59080100) | |
676-815, gnl|monDom2|scaffold_64 (9618330-9618553) | |
676-815, gnl|panTro1|chr13 (91952301-91952510) | |
676-815, gnl|rheMac2|chr12 (65036327-65036536) | |
676-815, gnl|rn3|chr9 (57570124-57570326) | |
945-1080, gnl|bosTau2|chr2 (52421489-52421624) | |
945-1080, gnl|canFam2|chr37 (13397188-13397408) | |
945-1080, gnl|danRer3|chr5 (8915402-8915217) | |
945-1080, gnl|echTel1|scaffold_280955 (82887-83108) | |
945-1080, gnl|galGal2|chr7 (12344295-12344497) | |
945-1080, gnl|hg17|chr2 (201967018-201967240) | |
945-1080, gnl|Hg17|chr2 (201967054-201967189) | |
945-1080, gnl|loxAfr1|scaffold_35352 (14283-14061) | |
945-1080, gnl|mm7|chr1 (59084684-59084905) | |
945-1080, gnl|Mm7|chr1 (59084720-59084855) | |
945-1080, gnl|monDom2|scaffold_64 (9622985-9623208) | |
945-1080, gnl|oryCun1|scaffold_87373 (4400-4192) | |
945-1080, gnl|panTro1|chr13 (91956538-91956760) | |
945-1080, gnl|rheMac2|chr12 (65040576-65040792) | |
945-1080, gnl|rn3|chr9 (57574928-57575149) |
Expressed library(ies): 5 entry(ies) | More info |
Expressed library(ies): 5 entry(ies) | Help | Less info |
cut (0.169924) | |
nco (0.161734) | |
fat (0.147427) | |
pla (0.133672) | |
bla (0.124347) |
Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cut (0.169924) | |
nco (0.161734) | |
fat (0.147427) | |
pla (0.133672) | |
bla (0.124347) |